UHGV-2114825

Genome information

Genome length 35,078 bps

CDS count 45

Completeness 99.90% (high-quality)

geNomad score 0.9775

Prediction confidence Confident

Genome information
Genome ID	UHGV-2114825
vOTU ID	vOTU-014559
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029578\|Ga0245007_100182\|provirus_37625_75204
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	15
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9775
Virus hallmark genes (geNomad)	15
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	26.15
Jumbo phage	No

Genome content
Genome length	35,078 bps
GC content	56.13%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	45
CDS density	93.29%
Average CDS length	731.20 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2114825_1	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-2114825_1	PHROG	phrog_10030	tail length tape measure protein	tail
UHGV-2114825_1	UniRef90	UniRef90_UPI0019599082	M23 family metallopeptidase	NA
UHGV-2114825_1	eggNOG-mapper	264732.Moth_2422	G5 domain protein	NA
UHGV-2114825_1	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-2114825_1	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-2114825_1	Structural annotation	PF01551, NF040883	NA	NA
UHGV-2114825_3	PHROG	phrog_4912	tail fiber assembly	tail
UHGV-2114825_3	UniRef90	UniRef90_UPI0019223612	phage tail assembly chaperone	NA
UHGV-2114825_3	eggNOG-mapper	1121406.JAEX01000012_gene656	Phage tail assembly chaperone protein	NA
UHGV-2114825_3	Pfam	PF16778	Phage tail assembly chaperone protein	Phage_tail_APC
UHGV-2114825_3	Structural annotation	PF16778	NA	NA
UHGV-2114825_4	PHROG	phrog_5302	tail protein	tail
UHGV-2114825_4	UniRef90	UniRef90_UPI001C3BCE79	Phage tail protein	NA
UHGV-2114825_4	eggNOG-mapper	411470.RUMGNA_00248	Phage tail-collar fibre protein	NA
UHGV-2114825_4	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-2114825_5	Structural annotation	PF16407	NA	NA
UHGV-2114825_6	Structural annotation	PF18614, MF_00085, NF003082, COG0361	NA	NA
UHGV-2114825_7	PHROG	phrog_26795	NA	unknown function
UHGV-2114825_7	eggNOG-mapper	742740.HMPREF9474_04294	NA	NA
UHGV-2114825_7	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-2114825_8	PHROG	phrog_37549	virion structural protein	head and packaging
UHGV-2114825_8	UniRef90	UniRef90_A0A3D0W045	Fibronectin type-III domain-containing protein	NA
UHGV-2114825_8	eggNOG-mapper	1161901.I1TLF2_9CAUD	NA	NA
UHGV-2114825_8	Structural annotation	PF02010, PF06995, MF_04116, NF010681, COG3401, COG3499	NA	NA
UHGV-2114825_9	PHROG	phrog_33680	NA	unknown function
UHGV-2114825_9	UniRef90	UniRef90_A0A174XMM8	Tail tape measure protein TP901 core region	NA
UHGV-2114825_9	eggNOG-mapper	1195236.CTER_5104	nuclear chromosome segregation	NA
UHGV-2114825_9	COG	COG5283	Phage-related tail protein	NA
UHGV-2114825_9	Structural annotation	TIGR01760, COG5280	NA	NA
UHGV-2114825_10	Structural annotation	PF12363	NA	NA
UHGV-2114825_11	PHROG	phrog_88	major tail protein	tail
UHGV-2114825_11	Structural annotation	PF06488, TIGR01603	NA	NA
UHGV-2114825_13	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2114825_13	UniRef90	UniRef90_UPI000684DFDC	HK97 gp10 family phage protein	NA
UHGV-2114825_13	eggNOG-mapper	1195236.CTER_5108	Phage protein, HK97 gp10 family	NA
UHGV-2114825_13	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-2114825_13	Structural annotation	TIGR01725	NA	NA
UHGV-2114825_14	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-2114825_14	UniRef90	UniRef90_UPI00195B41A2	phage head closure protein	NA
UHGV-2114825_14	eggNOG-mapper	411470.RUMGNA_02070	NA	NA
UHGV-2114825_14	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-2114825_14	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-2114825_15	PHROG	phrog_5223	neck protein	connector
UHGV-2114825_15	UniRef90	UniRef90_UPI00195CBB4A	DNA-packaging protein	NA
UHGV-2114825_15	eggNOG-mapper	411471.SUBVAR_05853	NA	NA
UHGV-2114825_16	PHROG	phrog_10	major head protein	head and packaging
UHGV-2114825_16	UniRef90	UniRef90_A0A1C5W5F9	Phage major capsid protein, HK97 family	NA
UHGV-2114825_16	eggNOG-mapper	742740.HMPREF9474_04304	Phage capsid family	NA
UHGV-2114825_16	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2114825_16	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2114825_16	Structural annotation	PF05065, PF09032, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2114825_17	KOfam	K06904	NA	NA
UHGV-2114825_17	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-2114825_17	UniRef90	UniRef90_A0A1C5W530	Phage prohead protease, HK97 family	NA
UHGV-2114825_17	eggNOG-mapper	411471.SUBVAR_05851	Caudovirus prohead serine protease	NA
UHGV-2114825_17	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-2114825_17	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-2114825_17	COG	COG3740	Phage head maturation protease	NA
UHGV-2114825_17	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-2114825_18	PHROG	phrog_12	portal protein	head and packaging
UHGV-2114825_18	UniRef90	UniRef90_UPI00195C5E58	phage portal protein	NA
UHGV-2114825_18	eggNOG-mapper	742740.HMPREF9474_04306	Phage portal protein	NA
UHGV-2114825_18	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2114825_18	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2114825_18	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-2114825_19	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2114825_19	UniRef90	UniRef90_A0A8J6TY49	Terminase large subunit	NA
UHGV-2114825_19	eggNOG-mapper	411471.SUBVAR_05848	large subunit	NA
UHGV-2114825_19	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-2114825_19	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2114825_19	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2114825_19	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-2114825_20	PHROG	phrog_1066	NA	unknown function
UHGV-2114825_20	eggNOG-mapper	1094508.Tsac_2428	NA	NA
UHGV-2114825_20	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-2114825_21	UniRef90	UniRef90_A0A5C6RH43	ATP-binding protein	NA
UHGV-2114825_21	eggNOG-mapper	930166.CD58_16850	NA	NA
UHGV-2114825_21	Structural annotation	PF10443, MF_00553, TIGR01242, COG5635	NA	NA
UHGV-2114825_22	eggNOG-mapper	693746.OBV_25230	NA	NA
UHGV-2114825_22	Structural annotation	PF06530, TIGR01636	NA	NA
UHGV-2114825_24	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-2114825_24	PHROG	phrog_4715	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-2114825_24	UniRef90	UniRef90_A0A1Q6T350	ParB domain-containing protein	NA
UHGV-2114825_24	eggNOG-mapper	411471.SUBVAR_05842	ParB-like nuclease domain	NA
UHGV-2114825_24	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-2114825_24	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-2114825_24	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-2114825_25	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-2114825_25	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-2114825_25	UniRef90	UniRef90_A0A1Q6T3I8	AAA_31 domain-containing protein	NA
UHGV-2114825_25	eggNOG-mapper	411471.SUBVAR_05839	AAA domain	NA
UHGV-2114825_25	Pfam	PF13614	AAA domain	AAA_31
UHGV-2114825_25	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-2114825_25	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-2114825_26	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-2114825_26	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-2114825_26	UniRef90	UniRef90_A0A6N8GZX5	DNA helicase	NA
UHGV-2114825_26	eggNOG-mapper	411471.SUBVAR_05838	Participates in initiation and elongation during chromosome replication	NA
UHGV-2114825_26	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-2114825_26	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-2114825_26	COG	COG0305	Replicative DNA helicase	NA
UHGV-2114825_26	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-2114825_27	PHROG	phrog_678	replication initiation O-like	DNA, RNA and nucleotide metabolism
UHGV-2114825_27	UniRef90	UniRef90_A0A6N8H2D2	Helix-turn-helix domain-containing protein	NA
UHGV-2114825_27	eggNOG-mapper	411471.SUBVAR_05835	Helix-turn-helix domain	NA
UHGV-2114825_27	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-2114825_27	COG	COG3935	DNA replication protein DnaD	NA
UHGV-2114825_27	Structural annotation	PF13730, MF_01909, TIGR04176, COG3355	NA	NA
UHGV-2114825_28	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-2114825_28	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2114825_28	UniRef90	UniRef90_A0A1Q6T3F1	Single-stranded DNA-binding protein	NA
UHGV-2114825_28	eggNOG-mapper	411471.SUBVAR_04646	Single-stranded DNA-binding protein	NA
UHGV-2114825_28	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-2114825_28	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-2114825_28	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2114825_28	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-2114825_28	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-2114825_29	PHROG	phrog_1029	NA	unknown function
UHGV-2114825_29	eggNOG-mapper	411471.SUBVAR_05833	NA	NA
UHGV-2114825_29	Structural annotation	PF10065, COG5532	NA	NA
UHGV-2114825_30	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-2114825_30	UniRef90	UniRef90_UPI001165C3F9	replication terminator protein	NA
UHGV-2114825_30	eggNOG-mapper	411471.SUBVAR_05832	NA	NA
UHGV-2114825_32	PHROG	phrog_7566	NA	unknown function
UHGV-2114825_32	eggNOG-mapper	411471.SUBVAR_05830	NA	NA
UHGV-2114825_33	COG	COG1327	Transcriptional regulator NrdR, contains Zn-ribbon and ATP-cone domains	NA
UHGV-2114825_33	Structural annotation	PF04606, NF007241	NA	NA
UHGV-2114825_34	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-2114825_34	eggNOG-mapper	411471.SUBVAR_05829	NA	NA
UHGV-2114825_34	Structural annotation	PF05772, NF007281	NA	NA
UHGV-2114825_35	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-2114825_36	PHROG	phrog_10280	NA	unknown function
UHGV-2114825_36	eggNOG-mapper	742738.HMPREF9460_02068	NA	NA
UHGV-2114825_39	eggNOG-mapper	517418.Ctha_0322	NA	NA
UHGV-2114825_39	Structural annotation	PF18186, NF033632	NA	NA
UHGV-2114825_40	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2114825_40	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2114825_40	UniRef90	UniRef90_A0A367GFH2	Transcriptional regulator	NA
UHGV-2114825_40	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2114825_40	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-2114825_40	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-2114825_41	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-2114825_41	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-2114825_41	UniRef90	UniRef90_A0A1Q6T3E1	HTH cro/C1-type domain-containing protein	NA
UHGV-2114825_41	eggNOG-mapper	411483.FAEPRAA2165_03041	NA	NA
UHGV-2114825_41	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2114825_41	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-2114825_41	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-2114825_41	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-2114825_42	KOfam	K02342	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	NA
UHGV-2114825_42	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-2114825_42	UniRef90	UniRef90_A0A1Y3SB26	Exonuclease domain-containing protein	NA
UHGV-2114825_42	eggNOG-mapper	1203606.HMPREF1526_00999	EXOIII	NA
UHGV-2114825_42	PADLOC	cd06127	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
UHGV-2114825_42	Pfam	PF00929	Exonuclease	RNase_T
UHGV-2114825_42	NCBIFam	TIGR00573.1	exonuclease, DNA polymerase III, epsilon subunit family	NA
UHGV-2114825_42	COG	COG2176	DNA polymerase III, alpha subunit (gram-positive type)	NA
UHGV-2114825_43	KOfam	K07171	mazF, ndoA, chpA; mRNA interferase MazF [EC:3.1.-.-]	NA
UHGV-2114825_43	PHROG	phrog_1412	antitoxin mazE-like	moron, auxiliary metabolic gene and host takeover
UHGV-2114825_43	UniRef90	UniRef90_UPI00157042DF	type II toxin-antitoxin system PemK/MazF family toxin	NA
UHGV-2114825_43	eggNOG-mapper	596329.HMPREF0631_1341	PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA
UHGV-2114825_43	Pfam	PF02452	PemK-like, MazF-like toxin of type II toxin-antitoxin system	PemK_toxin
UHGV-2114825_43	COG	COG2337	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	NA
UHGV-2114825_43	Structural annotation	PF02452, NF007386, COG2337	NA	NA
UHGV-2114825_45	KOfam	K14059	int; integrase	NA
UHGV-2114825_45	PHROG	phrog_1	integrase	integration and excision
UHGV-2114825_45	UniRef90	UniRef90_A0A1Q6T3G6	Tyr recombinase domain-containing protein	NA
UHGV-2114825_45	eggNOG-mapper	1203606.HMPREF1526_00215	Phage integrase family	NA
UHGV-2114825_45	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2114825_45	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2114825_45	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA