UHGV-2115074

Genome information

Genome length 36,892 bps

CDS count 53

Completeness 98.96% (high-quality)

geNomad score 0.9790

Prediction confidence Confident

Genome information
Genome ID	UHGV-2115074
vOTU ID	vOTU-014562
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029566\|Ga0244934_100012\|provirus_128234_165125
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.96% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9790
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.87
Jumbo phage	No

Genome content
Genome length	36,892 bps
GC content	61.80%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	95.08%
Average CDS length	668.32 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2115074_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-2115074_1	PHROG	phrog_95	integrase	integration and excision
UHGV-2115074_1	UniRef90	UniRef90_A0A810Q5V8	Integrase	NA
UHGV-2115074_1	eggNOG-mapper	1378168.N510_03180	resolvase	NA
UHGV-2115074_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-2115074_1	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-2115074_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-2115074_1	Structural annotation	PF00239, NF041201, COG1961	NA	NA
UHGV-2115074_2	PHROG	phrog_5783	NA	unknown function
UHGV-2115074_2	UniRef90	UniRef90_A0A810Q595	Helicase	NA
UHGV-2115074_2	eggNOG-mapper	638301.HMPREF0444_1540	NYN domain	NA
UHGV-2115074_2	Pfam	PF01936	NYN domain	NYN
UHGV-2115074_2	COG	COG1432	NYN domain, predicted PIN-related RNAse, tRNA/rRNA maturation	NA
UHGV-2115074_2	Structural annotation	PF01936, TIGR00288, COG1432	NA	NA
UHGV-2115074_3	PHROG	phrog_38135	NA	unknown function
UHGV-2115074_3	eggNOG-mapper	1408303.JNJJ01000047_gene2868	NA	NA
UHGV-2115074_3	Pfam	PF14020	NA	DUF4236
UHGV-2115074_3	Structural annotation	PF14020	NA	NA
UHGV-2115074_4	UniRef90	UniRef90_A0A1Y3ZTC9	HTH cro/C1-type domain-containing protein	NA
UHGV-2115074_4	eggNOG-mapper	693746.OBV_19770	sequence-specific DNA binding	NA
UHGV-2115074_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2115074_4	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-2115074_4	Structural annotation	PF13443, NF041951, COG1396	NA	NA
UHGV-2115074_5	PHROG	phrog_643	transcriptional regulator	transcription regulation
UHGV-2115074_5	Structural annotation	PF11195	NA	NA
UHGV-2115074_6	PHROG	phrog_585	NA	unknown function
UHGV-2115074_6	UniRef90	UniRef90_UPI001F52F0FC	NA	NA
UHGV-2115074_6	eggNOG-mapper	279010.BL03622	NA	NA
UHGV-2115074_6	Pfam	PF10711	NA	DUF2513
UHGV-2115074_6	Structural annotation	PF10711, TIGR03433, COG1695	NA	NA
UHGV-2115074_12	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2115074_12	PHROG	phrog_5823	transcriptional regulator	transcription regulation
UHGV-2115074_12	UniRef90	UniRef90_UPI00131A422A	helix-turn-helix domain-containing protein	NA
UHGV-2115074_12	eggNOG-mapper	391625.PPSIR1_14145	Helix-turn-helix XRE-family like proteins	NA
UHGV-2115074_12	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2115074_12	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2115074_13	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-2115074_13	UniRef90	UniRef90_A0A1Y3RCD0	DNA-binding protein	NA
UHGV-2115074_13	eggNOG-mapper	742738.HMPREF9460_00847	Helix-turn-helix XRE-family like proteins	NA
UHGV-2115074_13	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-2115074_13	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-2115074_13	Structural annotation	PF01381, MF_00535, NF040522, COG1476	NA	NA
UHGV-2115074_16	Structural annotation	PF21327	NA	NA
UHGV-2115074_18	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2115074_18	UniRef90	UniRef90_UPI001F33ADD3	helix-turn-helix domain-containing protein	NA
UHGV-2115074_18	eggNOG-mapper	693746.OBV_19830	DnaD domain protein	NA
UHGV-2115074_18	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-2115074_18	COG	COG3935	DNA replication protein DnaD	NA
UHGV-2115074_18	Structural annotation	PF04182, NF040939, COG3355	NA	NA
UHGV-2115074_19	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-2115074_19	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-2115074_19	UniRef90	UniRef90_UPI00195856D7	AAA family ATPase	NA
UHGV-2115074_19	eggNOG-mapper	1007096.BAGW01000033_gene1616	DnaB-like helicase N terminal domain	NA
UHGV-2115074_19	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-2115074_19	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-2115074_19	COG	COG0305	Replicative DNA helicase	NA
UHGV-2115074_19	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-2115074_20	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-2115074_20	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-2115074_20	UniRef90	UniRef90_UPI000318E277	ParA family protein	NA
UHGV-2115074_20	eggNOG-mapper	1007096.BAGW01000033_gene1614	4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family	NA
UHGV-2115074_20	Pfam	PF13614	AAA domain	AAA_31
UHGV-2115074_20	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-2115074_20	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-2115074_21	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-2115074_21	PHROG	phrog_27290	NA	unknown function
UHGV-2115074_21	UniRef90	UniRef90_UPI0003130F10	ParB N-terminal domain-containing protein	NA
UHGV-2115074_21	eggNOG-mapper	1007096.BAGW01000033_gene1613	ParB-like nuclease domain	NA
UHGV-2115074_21	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-2115074_21	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-2115074_21	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-2115074_25	Pfam	PF04448	NA	DUF551
UHGV-2115074_25	Structural annotation	PF04448	NA	NA
UHGV-2115074_27	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2115074_27	eggNOG-mapper	742738.HMPREF9460_04063	NA	NA
UHGV-2115074_27	Structural annotation	PF01446	NA	NA
UHGV-2115074_28	UniRef90	UniRef90_UPI001F232519	cysteine-rich KTR domain-containing protein	NA
UHGV-2115074_28	eggNOG-mapper	1226322.HMPREF1545_00110	Cysteine-rich KTR	NA
UHGV-2115074_28	Pfam	PF14205	Cysteine-rich KTR	Cys_rich_KTR
UHGV-2115074_28	Structural annotation	PF14205	NA	NA
UHGV-2115074_29	PHROG	phrog_2323	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2115074_29	UniRef90	UniRef90_UPI00195F0136	HNH endonuclease	NA
UHGV-2115074_29	eggNOG-mapper	1007096.BAGW01000012_gene2372	HNH endonuclease	NA
UHGV-2115074_29	AcrCatalog	cluster_19695	NA	NA
UHGV-2115074_29	Pfam	PF01844	HNH endonuclease	HNH
UHGV-2115074_29	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2115074_30	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-2115074_30	UniRef90	UniRef90_UPI001EDE2A13	phage terminase small subunit P27 family	NA
UHGV-2115074_30	eggNOG-mapper	1007096.BAGW01000012_gene2373	Phage terminase, small subunit	NA
UHGV-2115074_30	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-2115074_30	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-2115074_30	COG	COG3747	Phage terminase, small subunit	NA
UHGV-2115074_30	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-2115074_31	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2115074_31	UniRef90	UniRef90_UPI0019583763	terminase large subunit	NA
UHGV-2115074_31	eggNOG-mapper	1007096.BAGW01000012_gene2374	Phage Terminase	NA
UHGV-2115074_31	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-2115074_31	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2115074_31	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2115074_31	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-2115074_32	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-2115074_32	PHROG	phrog_21498	NA	unknown function
UHGV-2115074_32	UniRef90	UniRef90_C7MM70	ParB-like nuclease	NA
UHGV-2115074_32	eggNOG-mapper	469378.Ccur_02830	DNA binding	NA
UHGV-2115074_32	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-2115074_32	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-2115074_32	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-2115074_32	Structural annotation	PF02195, PF05869, MF_02015, TIGR00180, TIGR01712, COG1475	NA	NA
UHGV-2115074_34	PHROG	phrog_12	portal protein	head and packaging
UHGV-2115074_34	UniRef90	UniRef90_UPI001958B72F	phage portal protein	NA
UHGV-2115074_34	eggNOG-mapper	1007103.AFHW01000142_gene1297	Phage portal protein	NA
UHGV-2115074_34	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2115074_34	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-2115074_34	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2115074_34	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-2115074_35	PHROG	phrog_16951	NA	unknown function
UHGV-2115074_35	eggNOG-mapper	742738.HMPREF9460_04070	NA	NA
UHGV-2115074_35	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-2115074_36	PHROG	phrog_10	major head protein	head and packaging
UHGV-2115074_36	UniRef90	UniRef90_UPI00195B1FEC	phage major capsid protein	NA
UHGV-2115074_36	eggNOG-mapper	742740.HMPREF9474_04304	Phage capsid family	NA
UHGV-2115074_36	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2115074_36	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2115074_36	Structural annotation	PF05065, PF14182, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2115074_37	UniRef90	UniRef90_UPI0002DDE99A	head-tail connector protein	NA
UHGV-2115074_37	eggNOG-mapper	1007096.BAGW01000033_gene1600	NA	NA
UHGV-2115074_37	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-2115074_37	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-2115074_38	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-2115074_38	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-2115074_39	eggNOG-mapper	1158604.I591_01763	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-2115074_39	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-2115074_40	Structural annotation	PF05657	NA	NA
UHGV-2115074_41	PHROG	phrog_2175	protein with Ig domain	other
UHGV-2115074_41	eggNOG-mapper	1219626.HMPREF1639_07450	NA	NA
UHGV-2115074_41	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-2115074_42	Structural annotation	PF17388	NA	NA
UHGV-2115074_43	eggNOG-mapper	457421.CBFG_03716	NA	NA
UHGV-2115074_44	PHROG	phrog_23464	NA	unknown function
UHGV-2115074_44	UniRef90	UniRef90_F7KUT6	PhageMin_Tail domain-containing protein	NA
UHGV-2115074_44	eggNOG-mapper	1378168.N510_03078	Tail tape measure protein, TP901 family	NA
UHGV-2115074_44	COG	COG5280	Phage-related minor tail protein	NA
UHGV-2115074_44	Structural annotation	PF20155, COG5280	NA	NA
UHGV-2115074_45	UniRef90	UniRef90_UPI000E5CE8E9	phage tail family protein	NA
UHGV-2115074_45	Structural annotation	PF05709, PF11699, TIGR01633, NF009806, COG4722	NA	NA
UHGV-2115074_46	PHROG	phrog_3558	tail protein	tail
UHGV-2115074_46	UniRef90	UniRef90_A0A8J6U198	Phage tail protein	NA
UHGV-2115074_46	eggNOG-mapper	1235800.C819_02223	Prophage endopeptidase tail	NA
UHGV-2115074_46	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-2115074_46	COG	COG4926	Phage-related protein	NA
UHGV-2115074_46	Structural annotation	PF06605, PF21683, TIGR01665, COG4926	NA	NA
UHGV-2115074_47	PHROG	phrog_372	tail protein	tail
UHGV-2115074_47	UniRef90	UniRef90_UPI001373A0FD	NA	NA
UHGV-2115074_47	eggNOG-mapper	1235802.C823_05263	NA	NA
UHGV-2115074_47	Pfam	PF05895	NA	DUF859
UHGV-2115074_47	COG	COG4675	Phage tail collar domain	NA
UHGV-2115074_47	Structural annotation	PF05895, MF_04116, NF010681, COG3291	NA	NA
UHGV-2115074_48	Structural annotation	PF10651	NA	NA
UHGV-2115074_49	PHROG	phrog_30034	NA	unknown function
UHGV-2115074_49	UniRef90	UniRef90_A0A3D1XGA4	Chitin-binding type-3 domain-containing protein	NA
UHGV-2115074_49	eggNOG-mapper	1392486.JIAF01000004_gene818	NA	NA
UHGV-2115074_50	KOfam	K10804	tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]	NA
UHGV-2115074_50	PHROG	phrog_26878	virion structural protein	head and packaging
UHGV-2115074_50	UniRef90	UniRef90_A0A329MGX9	SGNH_hydro domain-containing protein	NA
UHGV-2115074_50	eggNOG-mapper	1423755.BAML01000004_gene368	lipolytic protein G-D-S-L family	NA
UHGV-2115074_50	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-2115074_52	PHROG	phrog_199	holin	lysis
UHGV-2115074_52	UniRef90	UniRef90_UPI001BEFC888	Phage holin family protein	NA
UHGV-2115074_52	eggNOG-mapper	1160721.RBI_I01565	Bacteriophage holin family	NA
UHGV-2115074_52	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-2115074_52	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-2115074_52	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-2115074_52	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-2115074_53	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2115074_53	PHROG	phrog_435	endolysin	lysis
UHGV-2115074_53	UniRef90	UniRef90_UPI001BF1661D	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2115074_53	eggNOG-mapper	994573.T472_0210960	n-acetylmuramoyl-l-alanine amidase	NA
UHGV-2115074_53	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-2115074_53	Pfam	PF05036	SPOR domain	SPOR
UHGV-2115074_53	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2115074_53	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA