UHGV-2115465

Genome information

Genome length 34,584 bps

CDS count 46

Completeness 97.69% (high-quality)

geNomad score 0.9784

Prediction confidence Confident

Genome information
Genome ID	UHGV-2115465
vOTU ID	vOTU-014426
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029572\|Ga0244925_100384\|provirus_16595_51178
BioSample	SAMEA3708769
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.69% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	24
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9784
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	46.95
Jumbo phage	No

Genome content
Genome length	34,584 bps
GC content	45.23%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	46
CDS density	93.38%
Average CDS length	705.85 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2115465_1	PHROG	phrog_10226	NA	unknown function
UHGV-2115465_1	eggNOG-mapper	1430331.EP10_12910	Restriction endonuclease	NA
UHGV-2115465_1	COG	COG1715	Restriction endonuclease Mrr	NA
UHGV-2115465_1	Structural annotation	PF01878, COG4127	NA	NA
UHGV-2115465_2	PHROG	phrog_297	holin	lysis
UHGV-2115465_2	UniRef90	UniRef90_A0A356CY82	Peptidase C51 domain-containing protein	NA
UHGV-2115465_2	eggNOG-mapper	1160721.RBI_I01913	Glycosyl hydrolases family 25	NA
UHGV-2115465_2	Pfam	PF05257	CHAP domain	CHAP
UHGV-2115465_2	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-2115465_2	Structural annotation	PF06940, TIGR02594, COG3942	NA	NA
UHGV-2115465_3	PHROG	phrog_199	holin	lysis
UHGV-2115465_3	UniRef90	UniRef90_A0A373XMP0	Holin	NA
UHGV-2115465_3	eggNOG-mapper	1160721.RBI_I01565	Bacteriophage holin family	NA
UHGV-2115465_3	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-2115465_3	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-2115465_3	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-2115465_3	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-2115465_4	PHROG	phrog_134	NA	unknown function
UHGV-2115465_4	UniRef90	UniRef90_A0A374HLL3	XkdX family protein	NA
UHGV-2115465_4	eggNOG-mapper	1298920.KI911353_gene4834	Phage uncharacterised protein (Phage_XkdX)	NA
UHGV-2115465_4	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-2115465_4	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-2115465_6	eggNOG-mapper	1410617.JHXH01000006_gene232	NA	NA
UHGV-2115465_6	Structural annotation	PF10651	NA	NA
UHGV-2115465_7	Structural annotation	PF21295, NF012201	NA	NA
UHGV-2115465_8	PHROG	phrog_3558	tail protein	tail
UHGV-2115465_8	UniRef90	UniRef90_A0A373VN51	Prophage_tail domain-containing protein	NA
UHGV-2115465_8	eggNOG-mapper	641112.ACOK01000073_gene2906	Prophage endopeptidase tail	NA
UHGV-2115465_8	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-2115465_8	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-2115465_8	COG	COG4926	Phage-related protein	NA
UHGV-2115465_8	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-2115465_9	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-2115465_9	eggNOG-mapper	1414720.CBYM010000001_gene708	PFAM Phage tail protein	NA
UHGV-2115465_9	COG	COG4722	Phage-related protein YomH	NA
UHGV-2115465_9	Structural annotation	PF20195, PF21621, TIGR01633, COG4722	NA	NA
UHGV-2115465_10	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-2115465_10	eggNOG-mapper	1499683.CCFF01000017_gene2565	tape measure	NA
UHGV-2115465_10	COG	COG1511	NA	NA
UHGV-2115465_11	PHROG	phrog_1633	NA	unknown function
UHGV-2115465_11	UniRef90	UniRef90_A0A139QHL2	NA	NA
UHGV-2115465_11	eggNOG-mapper	873448.STRPO_0293	NA	NA
UHGV-2115465_11	Pfam	PF17318	NA	DUF5361
UHGV-2115465_11	Structural annotation	PF17318	NA	NA
UHGV-2115465_12	PHROG	phrog_1526	NA	unknown function
UHGV-2115465_12	UniRef90	UniRef90_A0A4V0EMW3	NA	NA
UHGV-2115465_12	eggNOG-mapper	1589270.A0A0B5A2F3_9CAUD	NA	NA
UHGV-2115465_13	PHROG	phrog_117	major tail protein	tail
UHGV-2115465_13	UniRef90	UniRef90_A0A374HI29	Phage tail protein	NA
UHGV-2115465_13	eggNOG-mapper	1069534.LRC_07330	domain, Protein	NA
UHGV-2115465_13	COG	COG5492	NA	NA
UHGV-2115465_13	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-2115465_14	PHROG	phrog_123	tail terminator	connector
UHGV-2115465_14	UniRef90	UniRef90_G2SN47	NA	NA
UHGV-2115465_14	eggNOG-mapper	1280698.AUJS01000007_gene1043	NA	NA
UHGV-2115465_14	Structural annotation	PF06141	NA	NA
UHGV-2115465_15	PHROG	phrog_387	neck protein	connector
UHGV-2115465_15	UniRef90	UniRef90_A0A4U9XLC1	NA	NA
UHGV-2115465_15	eggNOG-mapper	883110.HMPREF9260_00655	NA	NA
UHGV-2115465_16	PHROG	phrog_501	head closure Hc1	connector
UHGV-2115465_16	UniRef90	UniRef90_R6CEU4	NA	NA
UHGV-2115465_16	eggNOG-mapper	157924.Q7Y4I1_9CAUD	NA	NA
UHGV-2115465_16	Structural annotation	PF12206, COG5614	NA	NA
UHGV-2115465_17	PHROG	phrog_137	head-tail adaptor Ad1	connector
UHGV-2115465_17	UniRef90	UniRef90_R6C7E8	Phage protein Gp19/Gp15/Gp42	NA
UHGV-2115465_17	eggNOG-mapper	1321372.AQQB01000060_gene65	Phage protein Gp19/Gp15/Gp42	NA
UHGV-2115465_17	Pfam	PF09355	NA	Phage_Gp19
UHGV-2115465_17	Structural annotation	PF09355	NA	NA
UHGV-2115465_18	PHROG	phrog_32396	NA	unknown function
UHGV-2115465_18	UniRef90	UniRef90_A0A5R9MH02	Phage major capsid protein	NA
UHGV-2115465_18	eggNOG-mapper	1321784.HMPREF1987_01073	Phage capsid family	NA
UHGV-2115465_18	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2115465_18	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2115465_18	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2115465_19	PHROG	phrog_233	head scaffolding protein	head and packaging
UHGV-2115465_19	UniRef90	UniRef90_A0A373VN88	NA	NA
UHGV-2115465_19	eggNOG-mapper	706433.HMPREF9430_01266	NA	NA
UHGV-2115465_19	Pfam	PF14265	NA	DUF4355
UHGV-2115465_19	Structural annotation	PF14265	NA	NA
UHGV-2115465_20	PHROG	phrog_17688	NA	unknown function
UHGV-2115465_20	UniRef90	UniRef90_A0A374HI97	Terminase	NA
UHGV-2115465_20	eggNOG-mapper	936375.HMPREF1152_0677	phage terminase, large subunit	NA
UHGV-2115465_20	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2115465_20	Structural annotation	PF20441, PF03354, MF_04146, NF033889, COG4626	NA	NA
UHGV-2115465_22	eggNOG-mapper	936596.HMPREF1495_2378	NA	NA
UHGV-2115465_23	PHROG	phrog_2494	minor head protein	head and packaging
UHGV-2115465_23	UniRef90	UniRef90_R6D1F4	Ntox50 domain-containing protein	NA
UHGV-2115465_23	eggNOG-mapper	1280698.AUJS01000007_gene1034	cell adhesion	NA
UHGV-2115465_23	COG	COG2369	NA	NA
UHGV-2115465_24	PHROG	phrog_104	portal protein	head and packaging
UHGV-2115465_24	UniRef90	UniRef90_A0A373VNC1	Phage portal protein	NA
UHGV-2115465_24	eggNOG-mapper	1280698.AUJS01000007_gene1033	Phage portal protein, SPP1 Gp6-like	NA
UHGV-2115465_24	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2115465_24	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-2115465_25	UniRef90	UniRef90_A0A5R9MHA3	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-2115465_25	Structural annotation	PF07374	NA	NA
UHGV-2115465_26	UniRef90	UniRef90_A0A373XZK2	NA	NA
UHGV-2115465_26	eggNOG-mapper	1160721.RBI_I01194	NA	NA
UHGV-2115465_26	Pfam	PF14199	NA	DUF4317
UHGV-2115465_26	Structural annotation	PF14199, MF_00730, NF001557, COG3081	NA	NA
UHGV-2115465_28	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2115465_28	UniRef90	UniRef90_A0A373Y8T3	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-2115465_28	eggNOG-mapper	411462.DORLON_00806	Endodeoxyribonuclease RusA	NA
UHGV-2115465_28	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-2115465_28	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-2115465_28	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-2115465_29	KOfam	K07505	repA; regulatory protein RepA	NA
UHGV-2115465_29	PHROG	phrog_2597	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-2115465_29	UniRef90	UniRef90_A0A1C6E992	Regulatory protein repA	NA
UHGV-2115465_29	eggNOG-mapper	394503.Ccel_3304	Primase C terminal 2 (PriCT-2)	NA
UHGV-2115465_29	Pfam	PF08707	Primase C terminal 2 (PriCT-2)	PriCT_2
UHGV-2115465_29	Pfam	PF13481	AAA domain	AAA_25
UHGV-2115465_29	COG	COG3598	RecA-family ATPase	NA
UHGV-2115465_29	Structural annotation	PF13481, PF16793, PF08220, MF_00350, MF_00700, NF006606, NF001641, COG3598, COG3285	NA	NA
UHGV-2115465_30	KOfam	K17677	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	NA
UHGV-2115465_30	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2115465_30	UniRef90	UniRef90_A0A1C6E943	Type-1 restriction enzyme R protein	NA
UHGV-2115465_30	eggNOG-mapper	1235792.C808_05388	helicase superfamily c-terminal domain	NA
UHGV-2115465_30	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-2115465_30	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-2115465_30	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-2115465_30	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-2115465_30	Structural annotation	PF04851, PF16203, MF_01489, NF008521, COG1061	NA	NA
UHGV-2115465_31	PHROG	phrog_2698	NA	unknown function
UHGV-2115465_31	UniRef90	UniRef90_UPI001D0882DA	NA	NA
UHGV-2115465_31	eggNOG-mapper	742723.HMPREF9477_00927	NA	NA
UHGV-2115465_31	Structural annotation	PF17426, NF005674	NA	NA
UHGV-2115465_32	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2115465_32	UniRef90	UniRef90_UPI000F52E538	ATP-binding protein	NA
UHGV-2115465_32	eggNOG-mapper	1262914.BN533_01949	AAA domain	NA
UHGV-2115465_32	Pfam	PF13479	AAA domain	AAA_24
UHGV-2115465_32	Structural annotation	PF13479, MF_00268, TIGR01618, COG0468	NA	NA
UHGV-2115465_33	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-2115465_33	PHROG	phrog_1499	NA	unknown function
UHGV-2115465_33	UniRef90	UniRef90_A0A1C6E8X2	Chromosome segregation protein	NA
UHGV-2115465_33	eggNOG-mapper	641112.ACOK01000073_gene2873	domain protein	NA
UHGV-2115465_33	Pfam	PF13476	AAA domain	AAA_23
UHGV-2115465_33	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-2115465_33	Structural annotation	PF11398, MF_00365, TIGR00634, COG0497	NA	NA
UHGV-2115465_36	PHROG	phrog_757	DNA methyltransferase	other
UHGV-2115465_36	UniRef90	UniRef90_A0A374BFJ7	DNA cytosine methyltransferase	NA
UHGV-2115465_36	eggNOG-mapper	397290.C810_01487	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-2115465_36	COG	COG0270	DNA-cytosine methylase	NA
UHGV-2115465_36	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-2115465_40	PHROG	phrog_14088	NA	unknown function
UHGV-2115465_40	UniRef90	UniRef90_A0A1C6GIT4	HTH cro/C1-type domain-containing protein	NA
UHGV-2115465_40	eggNOG-mapper	1235802.C823_04730	NA	NA
UHGV-2115465_41	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2115465_41	UniRef90	UniRef90_A0A5R9MHE3	Helix-turn-helix transcriptional regulator	NA
UHGV-2115465_41	eggNOG-mapper	476272.RUMHYD_02827	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-2115465_41	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-2115465_41	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-2115465_41	Structural annotation	PF01381, NF041951, COG3655	NA	NA
UHGV-2115465_42	KOfam	K14056	puuR; HTH-type transcriptional regulator, repressor for puuD	NA
UHGV-2115465_42	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2115465_42	UniRef90	UniRef90_A0A373VPW9	XRE family transcriptional regulator	NA
UHGV-2115465_42	eggNOG-mapper	1304866.K413DRAFT_0834	PFAM helix-turn-helix domain protein	NA
UHGV-2115465_42	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2115465_42	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-2115465_42	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-2115465_43	PHROG	phrog_20936	NA	unknown function
UHGV-2115465_43	UniRef90	UniRef90_A0A374E958	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-2115465_43	eggNOG-mapper	861450.HMPREF0080_02020	NA	NA
UHGV-2115465_43	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-2115465_43	Structural annotation	PF06114	NA	NA
UHGV-2115465_45	PHROG	phrog_38135	NA	unknown function
UHGV-2115465_45	UniRef90	UniRef90_R6T7M7	NA	NA
UHGV-2115465_45	eggNOG-mapper	1347369.CCAD010000035_gene1055	NA	NA
UHGV-2115465_45	Pfam	PF14020	NA	DUF4236
UHGV-2115465_45	Structural annotation	PF14020	NA	NA
UHGV-2115465_46	KOfam	K14059	int; integrase	NA
UHGV-2115465_46	PHROG	phrog_1	integrase	integration and excision
UHGV-2115465_46	UniRef90	UniRef90_A0A374HXT9	Site-specific integrase	NA
UHGV-2115465_46	eggNOG-mapper	445972.ANACOL_01797	Belongs to the 'phage' integrase family	NA
UHGV-2115465_46	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2115465_46	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-2115465_46	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA