UHGV-2117150

Genome information

vOTU vOTU-019120

Genome length 20,535 bps

CDS count 32

Completeness 54.92% (medium-quality)

geNomad score 0.9753

Prediction confidence Confident

Genome information
Genome ID	UHGV-2117150
vOTU ID	vOTU-019120
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029529\|Ga0244862_100486
BioSample	SAMEA3708713
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	54.92% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	10
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9753
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	26.75
Jumbo phage	No

Genome content
Genome length	20,535 bps
GC content	41.80%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	32
CDS density	86.85%
Average CDS length	563.81 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2117150_1	KOfam	K14059	int; integrase	NA
UHGV-2117150_1	PHROG	phrog_1	integrase	integration and excision
UHGV-2117150_1	UniRef90	UniRef90_A0A3E4LWT3	Site-specific integrase	NA
UHGV-2117150_1	eggNOG-mapper	610130.Closa_1360	Belongs to the 'phage' integrase family	NA
UHGV-2117150_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-2117150_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2117150_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2117150_1	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-2117150_2	PHROG	phrog_1847	NA	unknown function
UHGV-2117150_2	UniRef90	UniRef90_UPI001D04F48E	GIY-YIG nuclease family protein	NA
UHGV-2117150_2	eggNOG-mapper	1256908.HMPREF0373_00641	T5orf172	NA
UHGV-2117150_2	Pfam	PF13455	Meiotically up-regulated gene 113	MUG113
UHGV-2117150_2	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-2117150_2	Structural annotation	PF13250, NF041454	NA	NA
UHGV-2117150_3	PHROG	phrog_87	metallo-protease	other
UHGV-2117150_3	UniRef90	UniRef90_A0A3E4GMG5	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-2117150_3	eggNOG-mapper	742765.HMPREF9457_02093	IrrE N-terminal-like domain	NA
UHGV-2117150_3	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-2117150_3	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-2117150_3	Structural annotation	PF06114, COG3800	NA	NA
UHGV-2117150_4	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-2117150_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2117150_4	UniRef90	UniRef90_A0A3R6JYJ6	XRE family transcriptional regulator	NA
UHGV-2117150_4	eggNOG-mapper	1256908.HMPREF0373_00219	sequence-specific DNA binding	NA
UHGV-2117150_4	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-2117150_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2117150_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2117150_4	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-2117150_5	UniRef90	UniRef90_A0A391P5U9	HTH cro/C1-type domain-containing protein	NA
UHGV-2117150_5	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-2117150_6	UniRef90	UniRef90_A0A3E4LWT8	HTH psq-type domain-containing protein	NA
UHGV-2117150_6	Pfam	PF05225	helix-turn-helix, Psq domain	HTH_psq
UHGV-2117150_6	Structural annotation	PF21291, MF_00535, NF007257, COG3655	NA	NA
UHGV-2117150_8	PHROG	phrog_5070	NA	unknown function
UHGV-2117150_8	UniRef90	UniRef90_C6L9Y5	Bacterial transferase hexapeptide repeat protein	NA
UHGV-2117150_8	eggNOG-mapper	411470.RUMGNA_02189	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	NA
UHGV-2117150_8	Pfam	PF18836	YdcK Beta solenoid repeat	B_solenoid_ydck
UHGV-2117150_8	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA
UHGV-2117150_10	PHROG	phrog_30234	NA	unknown function
UHGV-2117150_10	eggNOG-mapper	33035.JPJF01000071_gene4461	NA	NA
UHGV-2117150_11	PHROG	phrog_11717	NA	unknown function
UHGV-2117150_11	eggNOG-mapper	508419.F8J181_9CAUD	NA	NA
UHGV-2117150_11	Structural annotation	PF06420, TIGR00607, COG4712	NA	NA
UHGV-2117150_12	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-2117150_12	eggNOG-mapper	411470.RUMGNA_02194	NA	NA
UHGV-2117150_12	Structural annotation	PF05772, NF007281	NA	NA
UHGV-2117150_13	PHROG	phrog_2113	NA	unknown function
UHGV-2117150_14	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2117150_14	eggNOG-mapper	33035.JPJF01000122_gene2460	NA	NA
UHGV-2117150_14	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA
UHGV-2117150_15	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-2117150_15	UniRef90	UniRef90_A0A174WT25	Replication initiator A domain-containing protein	NA
UHGV-2117150_15	eggNOG-mapper	742733.HMPREF9469_01845	NA	NA
UHGV-2117150_15	Structural annotation	PF10771, MF_01177, TIGR01714, COG0640	NA	NA
UHGV-2117150_16	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-2117150_16	PHROG	phrog_67	DNA methyltransferase	other
UHGV-2117150_16	UniRef90	UniRef90_A0A396Q1C9	Methyltransferase	NA
UHGV-2117150_16	eggNOG-mapper	411468.CLOSCI_00299	DNA methylase	NA
UHGV-2117150_16	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-2117150_16	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-2117150_16	COG	COG0863	DNA modification methylase	NA
UHGV-2117150_16	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-2117150_17	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-2117150_17	PHROG	phrog_116	DNA methyltransferase	other
UHGV-2117150_17	UniRef90	UniRef90_UPI0018970F97	DNA (cytosine-5-)-methyltransferase	NA
UHGV-2117150_17	eggNOG-mapper	994573.T472_0214025	PFAM C-5 cytosine-specific DNA methylase	NA
UHGV-2117150_17	PADLOC	MTase_II_00072	Type II methyltransferase	RM
UHGV-2117150_17	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-2117150_17	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-2117150_17	COG	COG0270	DNA-cytosine methylase	NA
UHGV-2117150_17	Structural annotation	PF00145, MF_00786, TIGR00675, COG0270	NA	NA
UHGV-2117150_20	eggNOG-mapper	568816.Acin_1246	NA	NA
UHGV-2117150_21	PHROG	phrog_22292	NA	unknown function
UHGV-2117150_22	PHROG	phrog_8684	NA	unknown function
UHGV-2117150_22	UniRef90	UniRef90_A0A373MQ88	YopX domain-containing protein	NA
UHGV-2117150_22	eggNOG-mapper	1121097.JCM15093_2710	YopX protein	NA
UHGV-2117150_22	Pfam	PF09643	YopX protein	YopX
UHGV-2117150_22	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-2117150_22	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-2117150_25	PHROG	phrog_7024	NA	unknown function
UHGV-2117150_25	eggNOG-mapper	1256908.HMPREF0373_00784	NA	NA
UHGV-2117150_26	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2117150_26	UniRef90	UniRef90_A0A415D8G2	Sigma70_r4 domain-containing protein	NA
UHGV-2117150_26	eggNOG-mapper	411462.DORLON_00800	NA	NA
UHGV-2117150_26	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-2117150_26	Structural annotation	PF04545, MF_00245, NF001068, COG2739	NA	NA
UHGV-2117150_27	PHROG	phrog_8680	NA	unknown function
UHGV-2117150_27	UniRef90	UniRef90_A0A415D8N8	NA	NA
UHGV-2117150_27	eggNOG-mapper	411470.RUMGNA_02208	NA	NA
UHGV-2117150_27	Pfam	PF14386	NA	DUF4417
UHGV-2117150_27	Structural annotation	PF14386	NA	NA
UHGV-2117150_29	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-2117150_29	UniRef90	UniRef90_UPI001F487344	DNA-packaging protein	NA
UHGV-2117150_29	eggNOG-mapper	397290.C810_05185	DNA-packaging protein gp3	NA
UHGV-2117150_29	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-2117150_29	Structural annotation	PF16677	NA	NA
UHGV-2117150_30	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2117150_30	PHROG	phrog_10250	NA	unknown function
UHGV-2117150_30	UniRef90	UniRef90_A0A3R6AA11	PBSX family phage terminase large subunit	NA
UHGV-2117150_30	eggNOG-mapper	411461.DORFOR_00750	COG COG1783 Phage terminase large subunit	NA
UHGV-2117150_30	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-2117150_30	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-2117150_30	COG	COG1783	Phage terminase large subunit	NA
UHGV-2117150_30	Structural annotation	PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-2117150_31	PHROG	phrog_533	portal protein	head and packaging
UHGV-2117150_31	UniRef90	UniRef90_A0A173TXV5	Phage portal protein, putative, A118 family	NA
UHGV-2117150_31	eggNOG-mapper	411461.DORFOR_00749	COG NOG25118 non supervised orthologous group	NA
UHGV-2117150_31	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2117150_31	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-2117150_32	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2117150_32	UniRef90	UniRef90_UPI001D0708A4	phage minor capsid protein	NA
UHGV-2117150_32	eggNOG-mapper	411461.DORFOR_00748	NA	NA
UHGV-2117150_32	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2117150_32	COG	COG2369	NA	NA
UHGV-2117150_32	Structural annotation	PF06152, TIGR01641, COG2369	NA	NA