UHGV-2117896

Genome information

vOTU vOTU-041944

Genome length 52,294 bps

CDS count 92

Completeness 83.52% (medium-quality)

geNomad score 0.9776

Prediction confidence Confident

Genome information
Genome ID	UHGV-2117896
vOTU ID	vOTU-041944
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029540\|Ga0244948_100378
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	83.52% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9776
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	11.23
Jumbo phage	No

Genome content
Genome length	52,294 bps
GC content	57.77%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	92
CDS density	88.05%
Average CDS length	503.45 bps
tRNA count	6
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2117896_1	eggNOG-mapper	216816.GS08_07875	Aminotransferase, class I II	NA
UHGV-2117896_1	COG	COG1168	Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities	NA
UHGV-2117896_2	KOfam	K16209	lacS, galP, rafP; lactose/raffinose/galactose permease	NA
UHGV-2117896_2	UniRef90	UniRef90_A0A6N2SB11	Lactose permease	NA
UHGV-2117896_2	eggNOG-mapper	158787.BSCA_0795	NA	NA
UHGV-2117896_2	Pfam	PF13347	MFS/sugar transport protein	MFS_2
UHGV-2117896_2	NCBIFam	TIGR00792.1	glycoside-pentoside-hexuronide (GPH):cation symporter	NA
UHGV-2117896_2	COG	COG2211	Na+/melibiose symporter or related transporter	NA
UHGV-2117896_3	KOfam	K14059	int; integrase	NA
UHGV-2117896_3	PHROG	phrog_1	integrase	integration and excision
UHGV-2117896_3	UniRef90	UniRef90_A0A7L9TY61	Tyrosine-type recombinase/integrase	NA
UHGV-2117896_3	eggNOG-mapper	1437610.BREU_1427	Phage integrase family	NA
UHGV-2117896_3	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2117896_3	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2117896_3	Structural annotation	PF00589, PF02899, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-2117896_5	PHROG	phrog_87	metallo-protease	other
UHGV-2117896_5	UniRef90	UniRef90_A0A4V2N2E1	Peptidase_M78 domain-containing protein	NA
UHGV-2117896_5	eggNOG-mapper	1437608.BBIA_2188	IrrE N-terminal-like domain	NA
UHGV-2117896_5	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-2117896_5	Structural annotation	PF06114, COG2856	NA	NA
UHGV-2117896_6	UniRef90	UniRef90_A0A4R0TD11	HTH cro/C1-type domain-containing protein	NA
UHGV-2117896_6	eggNOG-mapper	1394176.AWUO01000014_gene688	NA	NA
UHGV-2117896_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2117896_7	UniRef90	UniRef90_UPI000D78BA09	helix-turn-helix transcriptional regulator	NA
UHGV-2117896_7	eggNOG-mapper	1687.BCOR_0992	NA	NA
UHGV-2117896_9	eggNOG-mapper	1437610.BREU_1419	NA	NA
UHGV-2117896_10	Structural annotation	PF12728, NF033787, COG3311	NA	NA
UHGV-2117896_12	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-2117896_12	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2117896_12	UniRef90	UniRef90_B7GTF7	Single-stranded DNA-binding protein	NA
UHGV-2117896_12	eggNOG-mapper	216816.GS08_01265	Single-stranded DNA-binding protein	NA
UHGV-2117896_12	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-2117896_12	NCBIFam	NF005851.0	single-stranded DNA-binding protein	NA
UHGV-2117896_12	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2117896_12	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-2117896_12	Structural annotation	PF00436, MF_00984, NF005851, COG0629	NA	NA
UHGV-2117896_13	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-2117896_13	PHROG	phrog_6218	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-2117896_13	UniRef90	UniRef90_UPI000F8D4D55	ParB/RepB/Spo0J family partition protein	NA
UHGV-2117896_13	eggNOG-mapper	158787.BSCA_1895	ParB-like nuclease domain	NA
UHGV-2117896_13	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-2117896_13	NCBIFam	TIGR00180.1	ParB/RepB/Spo0J family partition protein	NA
UHGV-2117896_13	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-2117896_13	Structural annotation	PF02195, PF18579, MF_02015, TIGR00180, COG1475	NA	NA
UHGV-2117896_15	PHROG	phrog_1032	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2117896_15	UniRef90	UniRef90_A0A1X3ACZ6	Cryptic prophage protein	NA
UHGV-2117896_15	eggNOG-mapper	762211.BSTEL_0653	Transcriptional regulator	NA
UHGV-2117896_15	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-2117896_15	COG	COG0640	DNA-binding transcriptional regulator, ArsR family	NA
UHGV-2117896_15	Structural annotation	PF13730, MF_01819, TIGR01610, COG5529	NA	NA
UHGV-2117896_16	KOfam	K13288	orn, REX2, REXO2; oligoribonuclease [EC:3.1.-.-]	NA
UHGV-2117896_16	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-2117896_16	UniRef90	UniRef90_A0A3G8WKT3	Exonuclease domain-containing protein	NA
UHGV-2117896_16	eggNOG-mapper	1437609.BCAL_0154	3'-to-5' exoribonuclease specific for small oligoribonucleotides	NA
UHGV-2117896_16	COG	COG1949	Oligoribonuclease (3'-5' exoribonuclease)	NA
UHGV-2117896_16	Structural annotation	PF00929, MF_00045, NF003765, COG1949	NA	NA
UHGV-2117896_17	PHROG	phrog_14515	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2117896_17	UniRef90	UniRef90_A0A087ACR0	Restriction endonuclease	NA
UHGV-2117896_17	eggNOG-mapper	1437609.BCAL_0155	HNH endonuclease	NA
UHGV-2117896_17	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2117896_22	Structural annotation	TIGR00739, COG1862	NA	NA
UHGV-2117896_24	PHROG	phrog_3972	NA	unknown function
UHGV-2117896_24	UniRef90	UniRef90_W6EWQ1	NA	NA
UHGV-2117896_24	eggNOG-mapper	1158612.I580_01895	NA	NA
UHGV-2117896_24	dbAPIS	APIS035	Broad-spectrum counter-defense.	NA
UHGV-2117896_29	Structural annotation	PF11180, TIGR04550, COG4226	NA	NA
UHGV-2117896_33	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2117896_33	UniRef90	UniRef90_G1FMW8	Holliday junction resolvase	NA
UHGV-2117896_33	eggNOG-mapper	1203568.HMPREF1484_00227	NA	NA
UHGV-2117896_33	Structural annotation	PF13588, COG1591	NA	NA
UHGV-2117896_36	PHROG	phrog_2089	NA	unknown function
UHGV-2117896_36	UniRef90	UniRef90_A0A1V8RER5	NA	NA
UHGV-2117896_37	Structural annotation	NF007260	NA	NA
UHGV-2117896_39	eggNOG-mapper	78346.BRUM_0407	NA	NA
UHGV-2117896_42	UniRef90	UniRef90_UPI001A956D64	zinc-ribbon domain-containing protein	NA
UHGV-2117896_42	Structural annotation	COG1996	NA	NA
UHGV-2117896_43	PHROG	phrog_2447	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2117896_43	eggNOG-mapper	78346.BRUM_0405	NA	NA
UHGV-2117896_43	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-2117896_44	eggNOG-mapper	1437605.BACT_1092	NA	NA
UHGV-2117896_45	PHROG	phrog_908	NA	unknown function
UHGV-2117896_45	eggNOG-mapper	1688.BCUN_0617	NA	NA
UHGV-2117896_46	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-2117896_46	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-2117896_46	UniRef90	UniRef90_A0A1D7UNM8	Prophage antirepressor	NA
UHGV-2117896_46	eggNOG-mapper	702459.BBPR_0883	BRO family, N-terminal domain	NA
UHGV-2117896_46	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-2117896_46	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-2117896_46	COG	COG3617	Prophage antirepressor	NA
UHGV-2117896_46	Structural annotation	PF03374, PF02498, COG3645, COG3617	NA	NA
UHGV-2117896_54	UniRef90	UniRef90_UPI0010EF86EF	Magnesium chelatase subunit ChlI-like ATPase	NA
UHGV-2117896_57	KOfam	K07171	mazF, ndoA, chpA; mRNA interferase MazF [EC:3.1.-.-]	NA
UHGV-2117896_57	UniRef90	UniRef90_A0A0L7B5Y1	Growth inhibitor PemK	NA
UHGV-2117896_57	eggNOG-mapper	762211.BSTEL_0268	Toxic component of a toxin-antitoxin (TA) module	NA
UHGV-2117896_57	Pfam	PF02452	PemK-like, MazF-like toxin of type II toxin-antitoxin system	PemK_toxin
UHGV-2117896_57	COG	COG2337	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	NA
UHGV-2117896_58	KOfam	K07473	dinJ; DNA-damage-inducible protein J	NA
UHGV-2117896_58	PHROG	phrog_2737	NA	unknown function
UHGV-2117896_58	UniRef90	UniRef90_A0A5M9ZK91	Type II toxin-antitoxin system antitoxin, RelB/DinJ family	NA
UHGV-2117896_58	eggNOG-mapper	762211.BSTEL_0269	RelB antitoxin	NA
UHGV-2117896_58	Pfam	PF04221	RelB antitoxin	RelB
UHGV-2117896_58	NCBIFam	TIGR02384.1	type II toxin-antitoxin system RelB/DinJ family antitoxin	NA
UHGV-2117896_58	COG	COG3077	Antitoxin component of the RelBE or YafQ-DinJ toxin-antitoxin module	NA
UHGV-2117896_67	PHROG	phrog_19904	NA	unknown function
UHGV-2117896_69	UniRef90	UniRef90_UPI001BDDB304	toxin-antitoxin system antitoxin subunit	NA
UHGV-2117896_69	eggNOG-mapper	1437610.BREU_1783	NA	NA
UHGV-2117896_70	eggNOG-mapper	78344.BIGA_1553	NA	NA
UHGV-2117896_70	AcrCatalog	cluster_30544	NA	NA
UHGV-2117896_71	UniRef90	UniRef90_A0A1D7UNN5	HTH cro/C1-type domain-containing protein	NA
UHGV-2117896_71	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2117896_71	Structural annotation	PF13443, NF041951, COG1476	NA	NA
UHGV-2117896_73	Structural annotation	PF01844, PF09889, MF_00649	NA	NA
UHGV-2117896_74	PHROG	phrog_226	minor tail protein	tail
UHGV-2117896_74	eggNOG-mapper	680198.SCAB_61061	NA	NA
UHGV-2117896_75	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2117896_75	UniRef90	UniRef90_UPI001F0F6B49	phage terminase family protein	NA
UHGV-2117896_75	eggNOG-mapper	35760.BCHO_0844	Terminase	NA
UHGV-2117896_75	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2117896_75	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-2117896_76	PHROG	phrog_104	portal protein	head and packaging
UHGV-2117896_76	UniRef90	UniRef90_A0A5M9ZHZ0	Phage portal protein	NA
UHGV-2117896_76	eggNOG-mapper	35760.BCHO_0843	NA	NA
UHGV-2117896_76	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-2117896_77	PHROG	phrog_36668	NA	unknown function
UHGV-2117896_77	UniRef90	UniRef90_A0A1D7UNR5	NA	NA
UHGV-2117896_77	eggNOG-mapper	1692.BMAGN_1443	NA	NA
UHGV-2117896_77	Structural annotation	PF06152, TIGR01641, COG2369	NA	NA
UHGV-2117896_79	PHROG	phrog_3583	head decoration	head and packaging
UHGV-2117896_79	UniRef90	UniRef90_A0A261GA15	K structural protein	NA
UHGV-2117896_79	eggNOG-mapper	1692.BMAGN_1445	NA	NA
UHGV-2117896_79	Pfam	PF11133	Head fiber protein	Phage_head_fibr
UHGV-2117896_79	Structural annotation	PF02924	NA	NA
UHGV-2117896_80	PHROG	phrog_29	major head protein	head and packaging
UHGV-2117896_80	UniRef90	UniRef90_A0A2N0T1R7	Major capsid protein E	NA
UHGV-2117896_80	eggNOG-mapper	1688.BCUN_1870	Phage major capsid protein E	NA
UHGV-2117896_80	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-2117896_80	Structural annotation	PF03864, MF_04133, TIGR04387, COG4653	NA	NA
UHGV-2117896_81	PHROG	phrog_36776	NA	unknown function
UHGV-2117896_81	eggNOG-mapper	1692.BMAGN_1447	NA	NA
UHGV-2117896_82	PHROG	phrog_25853	NA	unknown function
UHGV-2117896_82	UniRef90	UniRef90_A0A6I1BRP7	Thiamine biosynthesis protein ThiS	NA
UHGV-2117896_82	eggNOG-mapper	35760.BCHO_0837	NA	NA
UHGV-2117896_82	Structural annotation	PF12206, TIGR01563, COG5614	NA	NA
UHGV-2117896_83	PHROG	phrog_32608	NA	unknown function
UHGV-2117896_83	Structural annotation	PF17395	NA	NA
UHGV-2117896_84	Structural annotation	PF12691	NA	NA
UHGV-2117896_85	PHROG	phrog_117	major tail protein	tail
UHGV-2117896_85	UniRef90	UniRef90_A0A1D7UNT0	Phage coat protein	NA
UHGV-2117896_85	eggNOG-mapper	1692.BMAGN_1451	NA	NA
UHGV-2117896_85	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-2117896_86	PHROG	phrog_36579	NA	unknown function
UHGV-2117896_88	PHROG	phrog_305	tail length tape measure protein	tail
UHGV-2117896_88	UniRef90	UniRef90_A0A4R0V4T5	Tail measure	NA
UHGV-2117896_88	eggNOG-mapper	35760.BCHO_0831	domain protein	NA
UHGV-2117896_88	COG	COG0840	Methyl-accepting chemotaxis protein (MCP)	NA
UHGV-2117896_89	UniRef90	UniRef90_A0A7Y0EUM5	Tail fiber protein	NA
UHGV-2117896_89	eggNOG-mapper	1680.BADO_1231	NA	NA
UHGV-2117896_89	Structural annotation	PF16774, TIGR02126, COG4722	NA	NA
UHGV-2117896_90	PHROG	phrog_538	minor tail protein	tail
UHGV-2117896_90	UniRef90	UniRef90_UPI001C2424C5	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-2117896_90	eggNOG-mapper	78345.BMERY_0868	NA	NA
UHGV-2117896_90	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-2117896_90	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-2117896_91	PHROG	phrog_28750	NA	unknown function
UHGV-2117896_92	PHROG	phrog_13141	NA	unknown function
UHGV-2117896_92	UniRef90	UniRef90_A0A087E4D0	Phage-related putative tail protein	NA
UHGV-2117896_92	eggNOG-mapper	1680.BADO_1228	NA	NA
UHGV-2117896_92	Structural annotation	PF20747	NA	NA