UHGV-2117961

Genome information

Genome length 35,519 bps

CDS count 54

Completeness 82.60% (medium-quality)

geNomad score 0.9641

Prediction confidence Confident

Genome information
Genome ID	UHGV-2117961
vOTU ID	vOTU-029538
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029562\|Ga0245122_100075\|provirus_131964_167482
BioSample	NA
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	82.60% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9641
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.6
Jumbo phage	No

Genome content
Genome length	35,519 bps
GC content	41.09%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	54
CDS density	89.27%
Average CDS length	589.78 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2117961_1	UniRef90	UniRef90_A0A174FBG8	tRNA and rRNA cytosine-C5-methylases	NA
UHGV-2117961_1	eggNOG-mapper	411460.RUMTOR_00287	NA	NA
UHGV-2117961_2	KOfam	K02051	ABC.SN.S; NitT/TauT family transport system substrate-binding protein	NA
UHGV-2117961_2	UniRef90	UniRef90_A0A828T0E8	NMT1 domain-containing protein	NA
UHGV-2117961_2	eggNOG-mapper	411460.RUMTOR_00286	COG COG0715 ABC-type nitrate sulfonate bicarbonate transport systems, periplasmic components	NA
UHGV-2117961_2	Pfam	PF09084	NMT1/THI5 like	NMT1
UHGV-2117961_2	COG	COG0715	ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component	NA
UHGV-2117961_3	KOfam	K07273	acm; lysozyme	NA
UHGV-2117961_3	PHROG	phrog_291	endolysin	lysis
UHGV-2117961_3	UniRef90	UniRef90_A0A173YXL7	N-acetylmuramoyl-L-alanine amidase sle1	NA
UHGV-2117961_3	eggNOG-mapper	33035.JPJF01000043_gene994	Glycosyl hydrolases family 25	NA
UHGV-2117961_3	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-2117961_3	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-2117961_3	Pfam	PF01476	LysM domain	LysM
UHGV-2117961_3	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-2117961_3	Structural annotation	PF01183, PF11623, COG3757, COG2139	NA	NA
UHGV-2117961_4	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-2117961_4	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-2117961_4	UniRef90	UniRef90_A0A4Q5C4M0	HicB family protein	NA
UHGV-2117961_4	eggNOG-mapper	665950.HMPREF1025_02512	HicB_like antitoxin of bacterial toxin-antitoxin system	NA
UHGV-2117961_4	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-2117961_4	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-2117961_4	Structural annotation	PF15919, COG1598	NA	NA
UHGV-2117961_5	KOfam	K07339	hicA; mRNA interferase HicA [EC:3.1.-.-]	NA
UHGV-2117961_5	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-2117961_5	UniRef90	UniRef90_A0A4Q5C7B7	Addiction module toxin, HicA family	NA
UHGV-2117961_5	eggNOG-mapper	665950.HMPREF1025_02513	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-2117961_5	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-2117961_5	COG	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-2117961_5	Structural annotation	PF07927, COG1724	NA	NA
UHGV-2117961_6	PHROG	phrog_18218	NA	unknown function
UHGV-2117961_6	UniRef90	UniRef90_A0A850HIH4	Ribonuclease	NA
UHGV-2117961_6	eggNOG-mapper	665950.HMPREF1025_02514	NA	NA
UHGV-2117961_6	Structural annotation	PF06946	NA	NA
UHGV-2117961_7	PHROG	phrog_1009	NA	unknown function
UHGV-2117961_7	UniRef90	UniRef90_A0A4Q5C6B7	Branched-chain amino acid ABC transporter permease	NA
UHGV-2117961_7	eggNOG-mapper	665950.HMPREF1025_02515	NA	NA
UHGV-2117961_8	PHROG	phrog_30034	NA	unknown function
UHGV-2117961_8	UniRef90	UniRef90_A0A252F2F2	Chitin-binding type-3 domain-containing protein	NA
UHGV-2117961_8	eggNOG-mapper	1122971.BAME01000151_gene6566	NA	NA
UHGV-2117961_9	PHROG	phrog_541	head-tail adaptor	connector
UHGV-2117961_9	eggNOG-mapper	411461.DORFOR_00743	NA	NA
UHGV-2117961_10	PHROG	phrog_422	major head protein	head and packaging
UHGV-2117961_10	eggNOG-mapper	411470.RUMGNA_02219	NA	NA
UHGV-2117961_10	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-2117961_11	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-2117961_11	UniRef90	UniRef90_A5KPA4	Phage minor structural protein GP20	NA
UHGV-2117961_11	eggNOG-mapper	411460.RUMTOR_02088	COG NOG36366 non supervised orthologous group	NA
UHGV-2117961_11	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-2117961_11	Structural annotation	PF06810	NA	NA
UHGV-2117961_12	PHROG	phrog_35328	NA	unknown function
UHGV-2117961_13	UniRef90	UniRef90_A0A6L9H2J6	Minor capsid protein (Fragment)	NA
UHGV-2117961_13	eggNOG-mapper	1235792.C808_05364	Phage minor capsid protein 2	NA
UHGV-2117961_13	COG	COG2369	NA	NA
UHGV-2117961_14	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2117961_14	UniRef90	UniRef90_A0A174BAS8	Phage minor capsid protein 2	NA
UHGV-2117961_14	eggNOG-mapper	658655.HMPREF0988_02563	Phage minor capsid protein 2	NA
UHGV-2117961_14	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2117961_14	COG	COG2369	NA	NA
UHGV-2117961_14	Structural annotation	PF06152, TIGR01641, COG2369	NA	NA
UHGV-2117961_15	PHROG	phrog_533	portal protein	head and packaging
UHGV-2117961_15	UniRef90	UniRef90_A0A174B716	Phage portal protein, putative, A118 family	NA
UHGV-2117961_15	eggNOG-mapper	658655.HMPREF0988_02564	NA	NA
UHGV-2117961_15	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-2117961_16	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2117961_16	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-2117961_16	UniRef90	UniRef90_A5KPA1	Phage terminase, large subunit, PBSX family	NA
UHGV-2117961_16	eggNOG-mapper	411460.RUMTOR_02085	NA	NA
UHGV-2117961_16	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-2117961_16	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2117961_16	COG	COG1783	Phage terminase large subunit	NA
UHGV-2117961_16	Structural annotation	PF04466, PF20441, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-2117961_17	PHROG	phrog_2412	NA	unknown function
UHGV-2117961_17	UniRef90	UniRef90_UPI001E414EFE	KGG domain-containing protein	NA
UHGV-2117961_17	eggNOG-mapper	742723.HMPREF9477_00912	NA	NA
UHGV-2117961_20	eggNOG-mapper	1123311.KB904489_gene1678	NA	NA
UHGV-2117961_20	NCBIFam	NF041551.1	YlcI/YnfO family protein	NA
UHGV-2117961_21	UniRef90	UniRef90_A0A374DFJ0	HTH cro/C1-type domain-containing protein	NA
UHGV-2117961_22	eggNOG-mapper	1235800.C819_00538	NA	NA
UHGV-2117961_23	UniRef90	UniRef90_G9R7G8	Viral_Rep domain-containing protein	NA
UHGV-2117961_23	eggNOG-mapper	742738.HMPREF9460_03543	NA	NA
UHGV-2117961_23	Pfam	PF00910	RNA helicase	RNA_helicase
UHGV-2117961_23	Structural annotation	PF02407, PF00519, MF_04000, TIGR01650, COG0606	NA	NA
UHGV-2117961_24	KOfam	K03466	ftsK, spoIIIE; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family	NA
UHGV-2117961_24	PHROG	phrog_1358	FtsK/SpoIIIE-like protein	moron, auxiliary metabolic gene and host takeover
UHGV-2117961_24	UniRef90	UniRef90_G9R7G9	FtsK domain-containing protein	NA
UHGV-2117961_24	eggNOG-mapper	1408306.JHXX01000005_gene1146	FtsK/SpoIIIE family	NA
UHGV-2117961_24	PADLOC	SspH_00004	SspH	SSP
UHGV-2117961_24	Pfam	PF01580	FtsK/SpoIIIE family	FtsK_SpoIIIE
UHGV-2117961_24	COG	COG1674	DNA segregation ATPase FtsK/SpoIIIE or related protein	NA
UHGV-2117961_24	Structural annotation	PF01580, MF_00348, NF041214, COG1674	NA	NA
UHGV-2117961_25	PHROG	phrog_16129	excisionase	integration and excision
UHGV-2117961_25	UniRef90	UniRef90_UPI001D0F5759	excisionase	NA
UHGV-2117961_25	eggNOG-mapper	546269.HMPREF0389_00631	Excisionase from transposon Tn916	NA
UHGV-2117961_25	Pfam	PF09035	Excisionase from transposon Tn916	Tn916-Xis
UHGV-2117961_25	Structural annotation	PF09035, TIGR01764, COG3311	NA	NA
UHGV-2117961_26	KOfam	K14059	int; integrase	NA
UHGV-2117961_26	PHROG	phrog_1	integrase	integration and excision
UHGV-2117961_26	UniRef90	UniRef90_G9R7H1	Tyr recombinase domain-containing protein	NA
UHGV-2117961_26	eggNOG-mapper	1235802.C823_00348	DNA integration	NA
UHGV-2117961_26	Pfam	PF02920	DNA binding domain of tn916 integrase	Integrase_DNA
UHGV-2117961_26	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2117961_26	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2117961_26	Structural annotation	PF00589, PF02920, PF14659, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-2117961_27	KOfam	K12805	NLRC4, CARD12; NLR family CARD domain-containing protein 4	NA
UHGV-2117961_27	PHROG	phrog_18297	NA	unknown function
UHGV-2117961_27	UniRef90	UniRef90_UPI000D71D509	NACHT domain-containing protein	NA
UHGV-2117961_27	eggNOG-mapper	764299.STRIC_0832	Nacht domain	NA
UHGV-2117961_27	Pfam	PF05729	NACHT domain	NACHT
UHGV-2117961_27	COG	COG5635	Predicted NTPase, NACHT family domain	NA
UHGV-2117961_27	Structural annotation	PF20702, MF_00553, NF001624, COG5635	NA	NA
UHGV-2117961_28	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2117961_28	UniRef90	UniRef90_A0A3D3U8Q6	Sigma70_r4 domain-containing protein	NA
UHGV-2117961_28	eggNOG-mapper	411460.RUMTOR_02080	NA	NA
UHGV-2117961_28	Structural annotation	PF04545, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-2117961_30	PHROG	phrog_25555	NA	unknown function
UHGV-2117961_32	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-2117961_32	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2117961_32	UniRef90	UniRef90_A0A174BC01	SNF2 family N-terminal domain	NA
UHGV-2117961_32	eggNOG-mapper	1235799.C818_04202	SNF2 family N-terminal domain	NA
UHGV-2117961_32	PADLOC	DpdE_00010	DpdE	DPD
UHGV-2117961_32	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-2117961_32	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-2117961_32	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-2117961_32	Structural annotation	PF13872, PF16203, MF_01821, NF041790, COG0553	NA	NA
UHGV-2117961_33	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2117961_33	UniRef90	UniRef90_R6ST09	VRR-NUC domain-containing protein	NA
UHGV-2117961_33	eggNOG-mapper	1235799.C818_04201	VRR_NUC	NA
UHGV-2117961_33	Structural annotation	PF01870, MF_01490, NF002585, COG1591	NA	NA
UHGV-2117961_34	PHROG	phrog_256	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2117961_34	UniRef90	UniRef90_UPI00164A24F6	virulence-associated E family protein	NA
UHGV-2117961_34	eggNOG-mapper	1235799.C818_04200	Virulence-associated protein E	NA
UHGV-2117961_34	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-2117961_34	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-2117961_34	Structural annotation	PF05272, NF011296, NF040562, COG5545	NA	NA
UHGV-2117961_35	KOfam	K02334	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	NA
UHGV-2117961_35	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-2117961_35	UniRef90	UniRef90_A0A173YIC3	DNA polymerase I, thermostable	NA
UHGV-2117961_35	eggNOG-mapper	1235799.C818_04199	DNA polymerase A domain	NA
UHGV-2117961_35	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-2117961_35	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-2117961_35	Structural annotation	PF00476, MF_04101, NF011540, COG0749	NA	NA
UHGV-2117961_36	PHROG	phrog_112	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2117961_36	UniRef90	UniRef90_UPI001A9BB972	NA	NA
UHGV-2117961_36	eggNOG-mapper	1235799.C818_04198	NA	NA
UHGV-2117961_36	Pfam	PF10991	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
UHGV-2117961_36	Structural annotation	PF10991, MF_04153, NF005241	NA	NA
UHGV-2117961_37	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-2117961_37	UniRef90	UniRef90_UPI00164C3050	NA	NA
UHGV-2117961_37	eggNOG-mapper	1235799.C818_04197	NA	NA
UHGV-2117961_37	Pfam	PF10926	NA	DUF2800
UHGV-2117961_37	COG	COG2887	RecB family exonuclease	NA
UHGV-2117961_37	Structural annotation	PF10926, MF_03030, TIGR00372, COG0792	NA	NA
UHGV-2117961_38	PHROG	phrog_22695	NA	unknown function
UHGV-2117961_38	eggNOG-mapper	1235799.C818_04196	NA	NA
UHGV-2117961_39	PHROG	phrog_26484	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2117961_39	UniRef90	UniRef90_UPI00164B6384	PC4/YdbC family ssDNA-binding protein	NA
UHGV-2117961_39	eggNOG-mapper	1229517.AMFD01000013_gene1357	Transcriptional Coactivator p15 (PC4)	NA
UHGV-2117961_39	Pfam	PF02229	Transcriptional Coactivator p15 (PC4)	PC4
UHGV-2117961_39	COG	COG4443	NA	NA
UHGV-2117961_39	Structural annotation	COG4443	NA	NA
UHGV-2117961_41	PHROG	phrog_22934	NA	unknown function
UHGV-2117961_43	PHROG	phrog_585	NA	unknown function
UHGV-2117961_43	UniRef90	UniRef90_UPI00129D2984	NA	NA
UHGV-2117961_43	eggNOG-mapper	543734.LCABL_13080	NA	NA
UHGV-2117961_43	Pfam	PF10711	NA	DUF2513
UHGV-2117961_43	Structural annotation	PF10711, MF_01819, TIGR03433, COG3432	NA	NA
UHGV-2117961_46	PHROG	phrog_4298	NA	unknown function
UHGV-2117961_46	eggNOG-mapper	743719.PaelaDRAFT_5542	NA	NA
UHGV-2117961_48	UniRef90	UniRef90_R5R9H8	HTH cro/C1-type domain-containing protein	NA
UHGV-2117961_48	eggNOG-mapper	1121289.JHVL01000079_gene1187	Helix-turn-helix XRE-family like proteins	NA
UHGV-2117961_48	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-2117961_48	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-2117961_49	PHROG	phrog_11939	NA	unknown function
UHGV-2117961_49	eggNOG-mapper	1004785.AMBLS11_01120	NA	NA
UHGV-2117961_49	Structural annotation	PF13031	NA	NA
UHGV-2117961_51	UniRef90	UniRef90_N2AZL4	HTH cro/C1-type domain-containing protein	NA
UHGV-2117961_51	eggNOG-mapper	97139.C824_00056	Cro/C1-type HTH DNA-binding domain	NA
UHGV-2117961_51	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-2117961_51	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-2117961_52	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2117961_52	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2117961_52	UniRef90	UniRef90_UPI0006CF5EA8	helix-turn-helix domain-containing protein	NA
UHGV-2117961_52	eggNOG-mapper	1235790.C805_00592	Helix-turn-helix XRE-family like proteins	NA
UHGV-2117961_52	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2117961_52	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2117961_52	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-2117961_53	PHROG	phrog_87	metallo-protease	other
UHGV-2117961_53	UniRef90	UniRef90_A0A3E4MEG4	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-2117961_53	eggNOG-mapper	658655.HMPREF0988_02595	Zn peptidase	NA
UHGV-2117961_53	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-2117961_53	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-2117961_53	Structural annotation	PF06114, COG2856	NA	NA
UHGV-2117961_54	PHROG	phrog_7115	NA	unknown function
UHGV-2117961_54	UniRef90	UniRef90_F7JJT6	bPH_1 domain-containing protein	NA
UHGV-2117961_54	eggNOG-mapper	658655.HMPREF0988_00596	Bacterial PH domain	NA
UHGV-2117961_54	Pfam	PF08000	Bacterial PH domain	bPH_1