UHGV-2118424

Genome information

Genome length 43,906 bps

CDS count 58

Completeness 99.90% (high-quality)

geNomad score 0.9715

Prediction confidence Confident

Genome information
Genome ID	UHGV-2118424
vOTU ID	vOTU-014563
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029559\|Ga0244915_100244\|provirus_1_43906
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	25
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9715
Virus hallmark genes (geNomad)	15
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	79.76
Jumbo phage	No

Genome content
Genome length	43,906 bps
GC content	51.65%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	92.95%
Average CDS length	706.81 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2118424_1	eggNOG-mapper	742743.HMPREF9453_00547	tail collar domain protein	NA
UHGV-2118424_1	COG	COG4675	Phage tail collar domain	NA
UHGV-2118424_3	eggNOG-mapper	1005058.UMN179_01642	NA	NA
UHGV-2118424_3	Structural annotation	PF21611	NA	NA
UHGV-2118424_4	KOfam	K14059	int; integrase	NA
UHGV-2118424_4	PHROG	phrog_1	integrase	integration and excision
UHGV-2118424_4	UniRef90	UniRef90_A0A3B9DV66	Recombinase XerC	NA
UHGV-2118424_4	eggNOG-mapper	742743.HMPREF9453_00550	Phage integrase family	NA
UHGV-2118424_4	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2118424_4	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-2118424_4	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-2118424_5	eggNOG-mapper	910314.HMPREF9220_0607	NA	NA
UHGV-2118424_6	PHROG	phrog_1101	tail protein	tail
UHGV-2118424_6	UniRef90	UniRef90_H1CYW4	Phage-tail_3 domain-containing protein	NA
UHGV-2118424_6	eggNOG-mapper	742743.HMPREF9453_00552	Putative phage tail protein	NA
UHGV-2118424_6	Pfam	PF13550	Putative phage tail protein	Phage-tail_3
UHGV-2118424_6	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-2118424_6	Structural annotation	PF13550, NF040662, COG4733	NA	NA
UHGV-2118424_7	KOfam	K13695	nlpC; probable lipoprotein NlpC	NA
UHGV-2118424_7	PHROG	phrog_329	minor tail protein	tail
UHGV-2118424_7	UniRef90	UniRef90_H1CYW5	NlpC/P60 domain-containing protein	NA
UHGV-2118424_7	eggNOG-mapper	742743.HMPREF9453_00553	cysteine-type peptidase activity	NA
UHGV-2118424_7	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-2118424_7	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-2118424_7	Structural annotation	PF00877, TIGR02219, COG0791	NA	NA
UHGV-2118424_8	PHROG	phrog_778	tail assembly protein	tail
UHGV-2118424_8	UniRef90	UniRef90_A0A3B9DWJ4	NA	NA
UHGV-2118424_8	eggNOG-mapper	742743.HMPREF9453_00554	NA	NA
UHGV-2118424_8	Pfam	PF09931	NA	DUF2163
UHGV-2118424_8	COG	COG5449	NA	NA
UHGV-2118424_8	Structural annotation	PF09931, TIGR01600, COG4672	NA	NA
UHGV-2118424_9	PHROG	phrog_2913	glycoside hydrolase	other
UHGV-2118424_9	UniRef90	UniRef90_UPI00034E8F13	NA	NA
UHGV-2118424_9	eggNOG-mapper	592028.GCWU000321_01387	NA	NA
UHGV-2118424_9	Pfam	PF09343	NA	DUF2460
UHGV-2118424_9	COG	COG5448	NA	NA
UHGV-2118424_9	Structural annotation	PF09343, TIGR02217, COG5448	NA	NA
UHGV-2118424_10	PHROG	phrog_18863	NA	unknown function
UHGV-2118424_10	UniRef90	UniRef90_C9LPA7	NlpC/P60 domain-containing protein	NA
UHGV-2118424_10	eggNOG-mapper	592028.GCWU000321_01386	tape measure	NA
UHGV-2118424_10	COG	COG1538	Outer membrane protein TolC	NA
UHGV-2118424_10	Structural annotation	TIGR01760	NA	NA
UHGV-2118424_11	eggNOG-mapper	679201.HMPREF9334_00328	NA	NA
UHGV-2118424_11	Structural annotation	PF19591	NA	NA
UHGV-2118424_12	PHROG	phrog_1407	major tail protein	tail
UHGV-2118424_12	UniRef90	UniRef90_UPI0008D98BCF	phage major tail protein, TP901-1 family	NA
UHGV-2118424_12	eggNOG-mapper	679201.HMPREF9334_00327	Phage tail tube protein	NA
UHGV-2118424_12	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-2118424_12	COG	COG5437	Phage tail protein, TP901-1 family	NA
UHGV-2118424_12	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-2118424_13	PHROG	phrog_176	tail terminator	connector
UHGV-2118424_13	UniRef90	UniRef90_UPI001C060F29	NA	NA
UHGV-2118424_13	eggNOG-mapper	2754.EH55_13215	NA	NA
UHGV-2118424_13	Pfam	PF11367	NA	DUF3168
UHGV-2118424_13	Structural annotation	PF16807, COG5003	NA	NA
UHGV-2118424_14	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2118424_14	UniRef90	UniRef90_A0A1H7A477	Phage protein, HK97 gp10 family	NA
UHGV-2118424_14	eggNOG-mapper	568816.Acin_1913	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-2118424_14	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-2118424_14	COG	COG5005	NA	NA
UHGV-2118424_14	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-2118424_15	UniRef90	UniRef90_G9YK41	Putative phage head-tail adaptor	NA
UHGV-2118424_15	eggNOG-mapper	861450.HMPREF0080_02050	Phage head-tail joining protein	NA
UHGV-2118424_15	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-2118424_15	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-2118424_16	eggNOG-mapper	927704.SELR_18180	NA	NA
UHGV-2118424_16	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-2118424_17	PHROG	phrog_10	major head protein	head and packaging
UHGV-2118424_17	UniRef90	UniRef90_A0A0U1L1V2	Phage major capsid protein	NA
UHGV-2118424_17	eggNOG-mapper	1123288.SOV_2c03610	Phage capsid family	NA
UHGV-2118424_17	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2118424_17	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2118424_17	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2118424_18	KOfam	K06904	NA	NA
UHGV-2118424_18	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-2118424_18	UniRef90	UniRef90_A0A0U1L0V7	Phage head maturation protease	NA
UHGV-2118424_18	eggNOG-mapper	1123288.SOV_2c03620	Caudovirus prohead serine protease	NA
UHGV-2118424_18	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-2118424_18	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-2118424_18	COG	COG3740	Phage head maturation protease	NA
UHGV-2118424_18	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-2118424_19	PHROG	phrog_12	portal protein	head and packaging
UHGV-2118424_19	UniRef90	UniRef90_A0A0U1L0X0	Portal protein, phage associated	NA
UHGV-2118424_19	eggNOG-mapper	1123288.SOV_2c03640	Phage portal protein	NA
UHGV-2118424_19	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2118424_19	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2118424_19	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-2118424_20	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2118424_20	UniRef90	UniRef90_UPI001D01C07B	terminase large subunit	NA
UHGV-2118424_20	eggNOG-mapper	927704.SELR_18220	Phage Terminase	NA
UHGV-2118424_20	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-2118424_20	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2118424_20	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2118424_20	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-2118424_21	PHROG	phrog_1066	NA	unknown function
UHGV-2118424_21	UniRef90	UniRef90_A0A316MDS1	Zinc-binding protein	NA
UHGV-2118424_21	eggNOG-mapper	1123288.SOV_2c03670	NA	NA
UHGV-2118424_21	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-2118424_22	PHROG	phrog_4581	terminase small subunit	head and packaging
UHGV-2118424_22	UniRef90	UniRef90_I0GRZ5	Putative phage protein	NA
UHGV-2118424_22	eggNOG-mapper	927704.SELR_18240	adenylate kinase activity	NA
UHGV-2118424_22	Pfam	PF01844	HNH endonuclease	HNH
UHGV-2118424_22	COG	COG0563	Adenylate kinase or related kinase	NA
UHGV-2118424_22	Structural annotation	PF13671, MF_03171, NF005251, NF008448, COG4639	NA	NA
UHGV-2118424_23	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-2118424_23	UniRef90	UniRef90_A0A1L4BYW8	Transposase	NA
UHGV-2118424_23	eggNOG-mapper	411468.CLOSCI_00294	transposase activity	NA
UHGV-2118424_23	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-2118424_26	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-2118424_26	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-2118424_26	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-2118424_27	PHROG	phrog_236	nucleotide kinase	other
UHGV-2118424_27	eggNOG-mapper	1236504.HMPREF2132_11120	NA	NA
UHGV-2118424_27	Pfam	PF11753	NA	DUF3310
UHGV-2118424_29	PHROG	phrog_16126	NA	unknown function
UHGV-2118424_31	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-2118424_31	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2118424_31	UniRef90	UniRef90_A0A6L6TN95	DEAD/DEAH box helicase	NA
UHGV-2118424_31	eggNOG-mapper	1273103.NM10_03191	SNF2 family	NA
UHGV-2118424_31	PADLOC	DpdE_00011	DpdE	DPD
UHGV-2118424_31	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-2118424_31	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-2118424_31	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-2118424_31	Structural annotation	PF13872, PF16203, MF_01821, NF041790, COG0553	NA	NA
UHGV-2118424_32	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2118424_32	UniRef90	UniRef90_UPI001D0165AA	VRR-NUC domain-containing protein	NA
UHGV-2118424_32	eggNOG-mapper	445335.CBN_2999	VRR-NUC domain-containing protein	NA
UHGV-2118424_32	Structural annotation	PF08774, MF_00130, NF002584	NA	NA
UHGV-2118424_34	PHROG	phrog_256	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2118424_34	UniRef90	UniRef90_A0A1G9QU34	Virulence-associated protein E	NA
UHGV-2118424_34	eggNOG-mapper	883156.HMPREF9282_00939	Virulence-associated protein E	NA
UHGV-2118424_34	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-2118424_34	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-2118424_34	Structural annotation	PF05272, MF_04000, NF005477, NF040562, COG5545	NA	NA
UHGV-2118424_35	PHROG	phrog_16315	NA	unknown function
UHGV-2118424_36	Structural annotation	PF18822	NA	NA
UHGV-2118424_39	KOfam	K03581	recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]	NA
UHGV-2118424_39	PHROG	phrog_325	Dda-like helicase	DNA, RNA and nucleotide metabolism
UHGV-2118424_39	UniRef90	UniRef90_UPI001D0288D0	DEAD/DEAH box helicase	NA
UHGV-2118424_39	eggNOG-mapper	1121085.AUCI01000012_gene2815	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD	NA
UHGV-2118424_39	PADLOC	cluster10	RecD_0_IVD	CRISPR-CAS
UHGV-2118424_39	Pfam	PF13604	AAA domain	AAA_30
UHGV-2118424_39	Pfam	PF13538	UvrD-like helicase C-terminal domain	UvrD_C_2
UHGV-2118424_39	COG	COG0507	ATPase/5'-3' helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-2118424_39	Structural annotation	PF13604, MF_01488, TIGR01448, COG0507	NA	NA
UHGV-2118424_40	KOfam	K02334	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	NA
UHGV-2118424_40	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-2118424_40	UniRef90	UniRef90_A0A6L6TPY0	POLAc domain-containing protein	NA
UHGV-2118424_40	eggNOG-mapper	1273103.NM10_03236	DNA polymerase	NA
UHGV-2118424_40	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-2118424_40	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-2118424_40	Structural annotation	PF00476, MF_04101, NF011540, COG0749	NA	NA
UHGV-2118424_41	KOfam	K03530	hupB; DNA-binding protein HU-beta	NA
UHGV-2118424_41	PHROG	phrog_379	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2118424_41	UniRef90	UniRef90_A0A357ASF0	HU family DNA-binding protein	NA
UHGV-2118424_41	eggNOG-mapper	1282887.AUJG01000005_gene219	Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions	NA
UHGV-2118424_41	Pfam	PF00216	Bacterial DNA-binding protein	Bac_DNA_binding
UHGV-2118424_41	COG	COG0776	Bacterial nucleoid DNA-binding protein IHF-alpha	NA
UHGV-2118424_43	PHROG	phrog_112	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2118424_43	UniRef90	UniRef90_A0A7X2P730	NA	NA
UHGV-2118424_43	eggNOG-mapper	1216932.CM240_0654	NA	NA
UHGV-2118424_43	Pfam	PF10991	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
UHGV-2118424_43	Structural annotation	PF10991, MF_04153	NA	NA
UHGV-2118424_44	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-2118424_44	UniRef90	UniRef90_A0A6L6TPV7	NA	NA
UHGV-2118424_44	eggNOG-mapper	1273103.NM10_03246	NA	NA
UHGV-2118424_44	Pfam	PF10926	NA	DUF2800
UHGV-2118424_44	COG	COG2887	RecB family exonuclease	NA
UHGV-2118424_44	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-2118424_46	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2118424_46	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-2118424_49	PHROG	phrog_14367	NA	unknown function
UHGV-2118424_49	UniRef90	UniRef90_H1CYZ6	LysM domain-containing protein	NA
UHGV-2118424_49	eggNOG-mapper	568816.Acin_1857	LysM domain	NA
UHGV-2118424_49	Pfam	PF01476	LysM domain	LysM
UHGV-2118424_49	COG	COG1388	LysM repeat	NA
UHGV-2118424_49	Structural annotation	MF_02014, NF010723, COG1388	NA	NA
UHGV-2118424_52	UniRef90	UniRef90_A0A7X1ZIB1	Helix-turn-helix domain-containing protein	NA
UHGV-2118424_52	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-2118424_52	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-2118424_52	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-2118424_53	UniRef90	UniRef90_UPI001B7FBC81	NA	NA
UHGV-2118424_53	eggNOG-mapper	910314.HMPREF9220_1114	NA	NA
UHGV-2118424_53	Pfam	PF05339	NA	DUF739
UHGV-2118424_53	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-2118424_53	Structural annotation	PF05339, NF002773, COG1476	NA	NA
UHGV-2118424_54	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-2118424_54	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-2118424_54	UniRef90	UniRef90_H1CZ00	HTH cro/C1-type domain-containing protein	NA
UHGV-2118424_54	eggNOG-mapper	742743.HMPREF9453_00588	Peptidase S24-like	NA
UHGV-2118424_54	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2118424_54	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-2118424_54	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-2118424_54	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-2118424_55	Structural annotation	PF13036, MF_01889, TIGR02722, COG5616	NA	NA
UHGV-2118424_56	KOfam	K14059	int; integrase	NA
UHGV-2118424_56	PHROG	phrog_1	integrase	integration and excision
UHGV-2118424_56	UniRef90	UniRef90_A0A848C0N0	Site-specific integrase	NA
UHGV-2118424_56	eggNOG-mapper	742743.HMPREF9453_00589	Belongs to the 'phage' integrase family	NA
UHGV-2118424_56	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-2118424_56	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2118424_56	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2118424_56	Structural annotation	PF00589, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-2118424_57	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-2118424_57	PHROG	phrog_1	integrase	integration and excision
UHGV-2118424_57	UniRef90	UniRef90_A0A1G5VQ82	Site-specific recombinase XerD	NA
UHGV-2118424_57	eggNOG-mapper	742743.HMPREF9453_00590	Belongs to the 'phage' integrase family	NA
UHGV-2118424_57	Pfam	PF02899	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_1
UHGV-2118424_57	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2118424_57	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-2118424_58	UniRef90	UniRef90_R7CNS4	LysM domain-containing protein	NA
UHGV-2118424_58	eggNOG-mapper	742743.HMPREF9453_00591	LysM domain protein	NA
UHGV-2118424_58	Pfam	PF01476	LysM domain	LysM
UHGV-2118424_58	COG	COG1388	LysM repeat	NA
UHGV-2118424_58	Structural annotation	PF01476, MF_02014, NF010723, COG1388	NA	NA