UHGV-2118839

Genome information

Genome length 31,062 bps

CDS count 44

Completeness 99.90% (high-quality)

geNomad score 0.9792

Prediction confidence Confident

Genome information
Genome ID	UHGV-2118839
vOTU ID	vOTU-059830
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029575\|Ga0244903_100302\|provirus_71151_102212
BioSample	SAMEA3708747
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9792
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	22.78
Jumbo phage	No

Genome content
Genome length	31,062 bps
GC content	55.95%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	44
CDS density	93.11%
Average CDS length	659.80 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2118839_1	KOfam	K14059	int; integrase	NA
UHGV-2118839_1	PHROG	phrog_1	integrase	integration and excision
UHGV-2118839_1	UniRef90	UniRef90_A0A2Z4QB94	Tyr recombinase domain-containing protein	NA
UHGV-2118839_1	eggNOG-mapper	626523.GCWU000342_00320	Belongs to the 'phage' integrase family	NA
UHGV-2118839_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2118839_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2118839_1	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-2118839_3	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-2118839_3	PHROG	phrog_1373	transcriptional regulator	transcription regulation
UHGV-2118839_3	UniRef90	UniRef90_UPI00051ABD2F	helix-turn-helix domain-containing protein	NA
UHGV-2118839_3	eggNOG-mapper	1280688.AUJB01000009_gene1936	Helix-turn-helix XRE-family like proteins	NA
UHGV-2118839_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2118839_3	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-2118839_4	Structural annotation	PF05973, TIGR02683, COG4683	NA	NA
UHGV-2118839_5	Structural annotation	PF21227	NA	NA
UHGV-2118839_6	UniRef90	UniRef90_A0A374JQK3	HIRAN domain-containing protein	NA
UHGV-2118839_6	eggNOG-mapper	411471.SUBVAR_05817	NA	NA
UHGV-2118839_6	Pfam	PF08797	HIRAN domain	HIRAN
UHGV-2118839_6	Structural annotation	PF08797	NA	NA
UHGV-2118839_7	PHROG	phrog_1914	NA	unknown function
UHGV-2118839_7	UniRef90	UniRef90_R6DVV5	Predicted Zn peptidase	NA
UHGV-2118839_7	eggNOG-mapper	1160721.RBI_I01604	NA	NA
UHGV-2118839_7	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-2118839_7	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-2118839_7	Structural annotation	PF06114, COG2856	NA	NA
UHGV-2118839_8	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2118839_8	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2118839_8	UniRef90	UniRef90_A0A8J8SBC4	Helix-turn-helix transcriptional regulator	NA
UHGV-2118839_8	eggNOG-mapper	1121335.Clst_0369	helix-turn-helix	NA
UHGV-2118839_8	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2118839_8	Pfam	PF15731	Antitoxin component of bacterial toxin-antitoxin system, MqsA	MqsA_antitoxin
UHGV-2118839_8	NCBIFam	TIGR03830.1	type II TA system antitoxin MqsA family protein	NA
UHGV-2118839_8	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2118839_8	Structural annotation	PF01381, PF21291, NF041951, TIGR02607, COG3655, COG1476	NA	NA
UHGV-2118839_9	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2118839_9	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-2118839_9	UniRef90	UniRef90_A0A354M9E0	HTH cro/C1-type domain-containing protein	NA
UHGV-2118839_9	eggNOG-mapper	1321784.HMPREF1987_01096	Peptidase S24-like	NA
UHGV-2118839_9	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2118839_9	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-2118839_10	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2118839_10	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-2118839_10	UniRef90	UniRef90_A0A0H5SHR8	HTH cro/C1-type domain-containing protein	NA
UHGV-2118839_10	eggNOG-mapper	1321784.HMPREF1987_01097	Helix-turn-helix XRE-family like proteins	NA
UHGV-2118839_10	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2118839_10	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2118839_10	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-2118839_12	Structural annotation	PF21291, TIGR03070, COG3655	NA	NA
UHGV-2118839_13	KOfam	K06284	abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes	NA
UHGV-2118839_13	PHROG	phrog_4681	antitoxin from a toxin-antitoxin system	moron, auxiliary metabolic gene and host takeover
UHGV-2118839_13	UniRef90	UniRef90_UPI0018F33479	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA
UHGV-2118839_13	eggNOG-mapper	268407.PWYN_12320	AbrB family transcriptional regulator	NA
UHGV-2118839_13	Pfam	PF04014	Antidote-toxin recognition MazE, bacterial antitoxin	MazE_antitoxin
UHGV-2118839_13	NCBIFam	TIGR01439.1	transcriptional regulator, AbrB family	NA
UHGV-2118839_13	COG	COG2002	Bifunctional DNA-binding transcriptional regulator of stationary/sporulation/toxin gene expression and antitoxin component of the YhaV-PrlF toxin-antitoxin module	NA
UHGV-2118839_13	Structural annotation	PF15937, TIGR01439, NF004424, COG2002	NA	NA
UHGV-2118839_16	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2118839_16	eggNOG-mapper	411470.RUMGNA_02047	NA	NA
UHGV-2118839_16	Structural annotation	PF21578	NA	NA
UHGV-2118839_17	KOfam	K03700	recU; recombination protein U	NA
UHGV-2118839_17	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2118839_17	UniRef90	UniRef90_A0A1H0W5Y9	Holliday junction resolvase RecU	NA
UHGV-2118839_17	eggNOG-mapper	1203606.HMPREF1526_01884	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	NA
UHGV-2118839_17	Pfam	PF03838	Recombination protein U	RecU
UHGV-2118839_17	COG	COG3331	Penicillin-binding protein-related factor A, putative recombinase	NA
UHGV-2118839_17	Structural annotation	PF03838, MF_00130, NF002581, COG3331	NA	NA
UHGV-2118839_18	eggNOG-mapper	1232449.BAHV02000016_gene1829	NA	NA
UHGV-2118839_19	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-2118839_19	PHROG	phrog_29443	NA	unknown function
UHGV-2118839_19	UniRef90	UniRef90_A0A350THX9	DNA (cytosine-5-)-methyltransferase	NA
UHGV-2118839_19	eggNOG-mapper	1121334.KB911073_gene1852	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-2118839_19	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-2118839_19	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-2118839_19	COG	COG0270	DNA-cytosine methylase	NA
UHGV-2118839_19	Structural annotation	PF00145, MF_00786, TIGR00675, COG0270	NA	NA
UHGV-2118839_20	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-2118839_20	PHROG	phrog_23072	DNA methyltransferase	other
UHGV-2118839_20	UniRef90	UniRef90_UPI001E2B88CF	DNA cytosine methyltransferase	NA
UHGV-2118839_20	eggNOG-mapper	1519439.JPJG01000060_gene1872	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-2118839_20	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-2118839_20	COG	COG0270	DNA-cytosine methylase	NA
UHGV-2118839_21	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-2118839_21	UniRef90	UniRef90_R6MCS9	NA	NA
UHGV-2118839_21	eggNOG-mapper	1519439.JPJG01000059_gene1910	NA	NA
UHGV-2118839_22	PHROG	phrog_1029	NA	unknown function
UHGV-2118839_22	eggNOG-mapper	1203606.HMPREF1526_01890	NA	NA
UHGV-2118839_22	Structural annotation	PF10065, COG5532	NA	NA
UHGV-2118839_23	PHROG	phrog_5781	NA	unknown function
UHGV-2118839_23	UniRef90	UniRef90_A0A1C6JA96	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-2118839_23	eggNOG-mapper	1048834.TC41_1868	NA	NA
UHGV-2118839_23	Pfam	PF14359	NA	DUF4406
UHGV-2118839_23	Structural annotation	PF14359, MF_03036, TIGR03646, COG3613	NA	NA
UHGV-2118839_24	PHROG	phrog_3136	NA	unknown function
UHGV-2118839_24	UniRef90	UniRef90_UPI001C26B029	ASCH domain-containing protein	NA
UHGV-2118839_24	eggNOG-mapper	97139.C824_00742	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-2118839_24	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-2118839_24	Structural annotation	PF08819, MF_00684, NF008917, COG4933	NA	NA
UHGV-2118839_25	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2118839_25	eggNOG-mapper	428125.CLOLEP_01806	NA	NA
UHGV-2118839_25	Pfam	PF07374	NA	DUF1492
UHGV-2118839_25	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-2118839_26	PHROG	phrog_17658	NA	unknown function
UHGV-2118839_26	eggNOG-mapper	536233.CLO_0894	NA	NA
UHGV-2118839_26	Structural annotation	PF18116	NA	NA
UHGV-2118839_27	UniRef90	UniRef90_UPI0009BF3675	HNH endonuclease	NA
UHGV-2118839_27	eggNOG-mapper	561177.ANHYDRO_01404	HNH nucleases	NA
UHGV-2118839_27	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2118839_28	PHROG	phrog_1066	NA	unknown function
UHGV-2118839_28	eggNOG-mapper	411470.RUMGNA_02061	NA	NA
UHGV-2118839_28	Structural annotation	PF05119, TIGR01558	NA	NA
UHGV-2118839_29	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2118839_29	UniRef90	UniRef90_A0A2V2GHH0	Terminase large subunit	NA
UHGV-2118839_29	eggNOG-mapper	742740.HMPREF9474_04307	COG COG4626 Phage terminase-like protein, large subunit	NA
UHGV-2118839_29	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-2118839_29	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2118839_29	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2118839_29	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-2118839_30	PHROG	phrog_12	portal protein	head and packaging
UHGV-2118839_30	eggNOG-mapper	411470.RUMGNA_02063	Phage portal protein	NA
UHGV-2118839_30	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2118839_31	Structural annotation	PF05657	NA	NA
UHGV-2118839_32	PHROG	phrog_2175	protein with Ig domain	other
UHGV-2118839_32	eggNOG-mapper	1219626.HMPREF1639_07450	NA	NA
UHGV-2118839_32	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-2118839_33	Structural annotation	PF17388	NA	NA
UHGV-2118839_34	eggNOG-mapper	1219626.HMPREF1639_07460	NA	NA
UHGV-2118839_35	PHROG	phrog_23464	NA	unknown function
UHGV-2118839_35	UniRef90	UniRef90_A0A1C6H5M9	Phage-related minor tail protein	NA
UHGV-2118839_35	eggNOG-mapper	1378168.N510_03078	Tail tape measure protein, TP901 family	NA
UHGV-2118839_35	COG	COG5280	Phage-related minor tail protein	NA
UHGV-2118839_35	Structural annotation	PF20155, COG5280	NA	NA
UHGV-2118839_36	eggNOG-mapper	610130.Closa_0753	phage tail	NA
UHGV-2118839_36	COG	COG4722	Phage-related protein YomH	NA
UHGV-2118839_36	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-2118839_37	PHROG	phrog_3558	tail protein	tail
UHGV-2118839_37	UniRef90	UniRef90_A0A3D1VAY1	Prophage_tail domain-containing protein	NA
UHGV-2118839_37	eggNOG-mapper	1111121.HMPREF1247_1242	Prophage endopeptidase tail	NA
UHGV-2118839_37	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-2118839_37	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-2118839_37	COG	COG4926	Phage-related protein	NA
UHGV-2118839_37	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-2118839_39	Structural annotation	PF00629, NF033675	NA	NA
UHGV-2118839_40	KOfam	K16628	COL7A; collagen type VII alpha	NA
UHGV-2118839_40	PHROG	phrog_11541	NA	unknown function
UHGV-2118839_40	eggNOG-mapper	1175629.AJTG01000006_gene514	NA	NA
UHGV-2118839_40	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-2118839_40	Pfam	PF13472	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
UHGV-2118839_41	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2118839_41	PHROG	phrog_5182	endolysin	lysis
UHGV-2118839_41	UniRef90	UniRef90_R5AZE6	N-acetylmuramoyl-L-alanine amidase family 2	NA
UHGV-2118839_41	eggNOG-mapper	397288.C806_00777	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA
UHGV-2118839_41	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-2118839_41	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2118839_41	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-2118839_42	PHROG	phrog_1863	NA	unknown function
UHGV-2118839_42	UniRef90	UniRef90_UPI001F223E8B	hemolysin XhlA family protein	NA
UHGV-2118839_42	eggNOG-mapper	1226322.HMPREF1545_04027	NA	NA
UHGV-2118839_43	PHROG	phrog_1129	holin	lysis
UHGV-2118839_43	UniRef90	UniRef90_A0A8J6J3M3	Phage holin family protein	NA
UHGV-2118839_43	eggNOG-mapper	742740.HMPREF9474_03522	NA	NA
UHGV-2118839_43	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-2118839_43	Structural annotation	PF06946	NA	NA
UHGV-2118839_44	KOfam	K18908	mepA; multidrug efflux pump	NA
UHGV-2118839_44	PHROG	phrog_6241	NA	unknown function
UHGV-2118839_44	UniRef90	UniRef90_R5APW5	MATE efflux family protein	NA
UHGV-2118839_44	eggNOG-mapper	658086.HMPREF0994_06074	Polysaccharide biosynthesis C-terminal domain	NA
UHGV-2118839_44	Pfam	PF01554	MatE	MatE
UHGV-2118839_44	NCBIFam	TIGR00797.1	MATE family efflux transporter	NA
UHGV-2118839_44	COG	COG0534	Na+-driven multidrug efflux pump, DinF/NorM/MATE family	NA
UHGV-2118839_44	Structural annotation	PF03023, MF_00400, NF041801, COG0534	NA	NA