UHGV-2118882

Genome information

Genome length 40,144 bps

CDS count 71

Completeness 98.22% (high-quality)

geNomad score 0.9786

Prediction confidence Confident

Genome information
Genome ID	UHGV-2118882
vOTU ID	vOTU-014571
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029567\|Ga0244886_100201\|provirus_8788_52962
BioSample	SAMEA3708730
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.22% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9786
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	47.8
Jumbo phage	No

Genome content
Genome length	40,144 bps
GC content	50.81%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	71
CDS density	91.98%
Average CDS length	524.37 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2118882_1	Structural annotation	PF12688	NA	NA
UHGV-2118882_4	PHROG	phrog_585	NA	unknown function
UHGV-2118882_4	UniRef90	UniRef90_A0A2G0E8R9	NA	NA
UHGV-2118882_4	eggNOG-mapper	1158602.I590_03003	NA	NA
UHGV-2118882_4	Pfam	PF10711	NA	DUF2513
UHGV-2118882_4	Structural annotation	PF10711, TIGR04176, COG1695	NA	NA
UHGV-2118882_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2118882_5	UniRef90	UniRef90_UPI00189845EC	helix-turn-helix domain-containing protein	NA
UHGV-2118882_5	eggNOG-mapper	1378168.N510_01712	NA	NA
UHGV-2118882_5	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-2118882_5	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-2118882_6	UniRef90	UniRef90_A0A8D9PDN2	DNA-binding protein	NA
UHGV-2118882_6	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-2118882_7	UniRef90	UniRef90_A0A367GIH6	HTH cro/C1-type domain-containing protein	NA
UHGV-2118882_7	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-2118882_7	Structural annotation	PF05339, MF_00535, NF041951, COG3655	NA	NA
UHGV-2118882_9	PHROG	phrog_5070	NA	unknown function
UHGV-2118882_9	UniRef90	UniRef90_A0A174CB23	Predicted acyltransferase	NA
UHGV-2118882_9	eggNOG-mapper	478749.BRYFOR_05427	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	NA
UHGV-2118882_9	Pfam	PF18836	YdcK Beta solenoid repeat	B_solenoid_ydck
UHGV-2118882_9	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA
UHGV-2118882_9	Structural annotation	NF040481	NA	NA
UHGV-2118882_12	eggNOG-mapper	1041142.ATTP01000043_gene5324	NA	NA
UHGV-2118882_13	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-2118882_13	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-2118882_13	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-2118882_13	Structural annotation	PF05772	NA	NA
UHGV-2118882_14	PHROG	phrog_7566	NA	unknown function
UHGV-2118882_14	eggNOG-mapper	693746.OBV_24070	NA	NA
UHGV-2118882_15	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-2118882_15	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2118882_15	UniRef90	UniRef90_A0A1Q6T150	Single-stranded DNA-binding protein	NA
UHGV-2118882_15	eggNOG-mapper	411471.SUBVAR_04646	Single-stranded DNA-binding protein	NA
UHGV-2118882_15	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-2118882_15	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-2118882_15	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2118882_15	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-2118882_15	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-2118882_16	eggNOG-mapper	1203606.HMPREF1526_00240	NA	NA
UHGV-2118882_17	PHROG	phrog_4973	NA	unknown function
UHGV-2118882_17	UniRef90	UniRef90_A0A3D3Y5F2	DNA-binding protein	NA
UHGV-2118882_17	eggNOG-mapper	584708.Apau_1668	Helix-turn-helix domain	NA
UHGV-2118882_17	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-2118882_17	Structural annotation	PF14090, TIGR00373, COG4738	NA	NA
UHGV-2118882_18	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-2118882_18	Pfam	PF19808	NA	DUF6291
UHGV-2118882_18	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-2118882_18	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-2118882_18	Structural annotation	PF07261, TIGR01446, COG3935	NA	NA
UHGV-2118882_19	Structural annotation	PF11417	NA	NA
UHGV-2118882_21	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-2118882_21	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-2118882_21	UniRef90	UniRef90_UPI0009E1B041	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-2118882_21	eggNOG-mapper	1408437.JNJN01000032_gene2312	Phosphoadenosine phosphosulfate reductase	NA
UHGV-2118882_21	PADLOC	BrxP_00001	BrxP	BREX
UHGV-2118882_21	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-2118882_21	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-2118882_21	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-2118882_22	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-2118882_22	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2118882_22	UniRef90	UniRef90_UPI0018ABA1B6	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-2118882_22	eggNOG-mapper	875454.BAEW01000002_gene491	Endodeoxyribonuclease RusA	NA
UHGV-2118882_22	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-2118882_22	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-2118882_22	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-2118882_27	Structural annotation	NF007260	NA	NA
UHGV-2118882_28	PHROG	phrog_9958	NA	unknown function
UHGV-2118882_28	UniRef90	UniRef90_UPI001D08A241	NA	NA
UHGV-2118882_28	eggNOG-mapper	1160721.RBI_I01591	NA	NA
UHGV-2118882_28	Structural annotation	PF19789	NA	NA
UHGV-2118882_29	PHROG	phrog_9151	HicB-like antitoxin	moron, auxiliary metabolic gene and host takeover
UHGV-2118882_29	UniRef90	UniRef90_A0A7C2NFZ4	Type II toxin-antitoxin system HicB family antitoxin	NA
UHGV-2118882_29	eggNOG-mapper	1392502.JNIO01000008_gene1606	protein encoded in hypervariable junctions of pilus gene clusters	NA
UHGV-2118882_29	Pfam	PF04448	NA	DUF551
UHGV-2118882_29	COG	COG4226	Predicted nuclease of the RNAse H fold, HicB family	NA
UHGV-2118882_29	Structural annotation	NF041588	NA	NA
UHGV-2118882_32	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-2118882_32	PHROG	phrog_620	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-2118882_32	UniRef90	UniRef90_UPI001E2E3568	ParB N-terminal domain-containing protein	NA
UHGV-2118882_32	eggNOG-mapper	1487921.DP68_08835	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-2118882_32	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-2118882_32	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-2118882_32	COG	COG0863	DNA modification methylase	NA
UHGV-2118882_32	Structural annotation	PF02195, TIGR00180, COG5119	NA	NA
UHGV-2118882_33	PHROG	phrog_842	beta-glucosyl-HMC-alpha-glucosyltransferase	other
UHGV-2118882_33	Pfam	PF20691	TET-Associated Glycosyltransferase	TAGT
UHGV-2118882_35	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2118882_35	PHROG	phrog_10250	NA	unknown function
UHGV-2118882_35	UniRef90	UniRef90_UPI000462EB3C	PBSX family phage terminase large subunit	NA
UHGV-2118882_35	eggNOG-mapper	1226322.HMPREF1545_00043	Phage terminase large subunit	NA
UHGV-2118882_35	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-2118882_35	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2118882_35	COG	COG1783	Phage terminase large subunit	NA
UHGV-2118882_35	Structural annotation	PF04466, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-2118882_36	PHROG	phrog_64	portal protein	head and packaging
UHGV-2118882_36	UniRef90	UniRef90_A0A856HZB4	Phage portal protein	NA
UHGV-2118882_36	eggNOG-mapper	1035196.HMPREF9998_01723	Phage portal protein, SPP1 Gp6-like	NA
UHGV-2118882_36	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2118882_36	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-2118882_37	PHROG	phrog_2468	head morphogenesis	head and packaging
UHGV-2118882_37	UniRef90	UniRef90_A0A7X5E1T7	Phage_Mu_F domain-containing protein	NA
UHGV-2118882_37	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-2118882_37	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-2118882_37	COG	COG2369	NA	NA
UHGV-2118882_37	Structural annotation	PF06152, TIGR01641, COG2369	NA	NA
UHGV-2118882_39	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2118882_39	UniRef90	UniRef90_A0A3A9EIF3	HK97 gp10 family phage protein	NA
UHGV-2118882_39	eggNOG-mapper	1280685.AUKC01000004_gene1630	NA	NA
UHGV-2118882_39	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-2118882_39	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-2118882_39	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-2118882_40	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-2118882_40	UniRef90	UniRef90_R6E548	Prophage pi1 protein 29	NA
UHGV-2118882_40	eggNOG-mapper	1111121.HMPREF1247_0834	NA	NA
UHGV-2118882_41	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-2118882_41	UniRef90	UniRef90_A0A6B9SU02	Fibronectin autolysin	NA
UHGV-2118882_41	eggNOG-mapper	320843.Q4ZBR6_9CAUD	Phage minor structural protein GP20	NA
UHGV-2118882_41	Structural annotation	PF06810	NA	NA
UHGV-2118882_42	PHROG	phrog_544	major head protein	head and packaging
UHGV-2118882_42	UniRef90	UniRef90_UPI0019576143	N4-gp56 family major capsid protein	NA
UHGV-2118882_42	eggNOG-mapper	411471.SUBVAR_06940	NA	NA
UHGV-2118882_42	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-2118882_42	Structural annotation	PF05065, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-2118882_44	PHROG	phrog_17977	NA	unknown function
UHGV-2118882_44	UniRef90	UniRef90_A0A285PT57	Phage head-tail joining protein	NA
UHGV-2118882_44	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-2118882_45	Structural annotation	PF11367	NA	NA
UHGV-2118882_46	PHROG	phrog_885	major tail protein	tail
UHGV-2118882_46	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-2118882_46	eggNOG-mapper	1504822.CCNO01000012_gene492	NA	NA
UHGV-2118882_46	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-2118882_47	PHROG	phrog_18646	NA	unknown function
UHGV-2118882_49	PHROG	phrog_20920	NA	unknown function
UHGV-2118882_49	eggNOG-mapper	1121335.Clst_0399	NA	NA
UHGV-2118882_49	Structural annotation	PF16674	NA	NA
UHGV-2118882_50	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-2118882_50	UniRef90	UniRef90_A0A348Z0U7	Phage tail tape measure protein	NA
UHGV-2118882_50	eggNOG-mapper	1499683.CCFF01000017_gene2565	tape measure	NA
UHGV-2118882_50	COG	COG1511	NA	NA
UHGV-2118882_50	Structural annotation	PF20155, MF_04138, COG5281	NA	NA
UHGV-2118882_51	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-2118882_51	UniRef90	UniRef90_UPI001C0FCFFA	phage tail family protein	NA
UHGV-2118882_51	eggNOG-mapper	1033737.CAEV01000029_gene285	Phage tail protein	NA
UHGV-2118882_51	COG	COG4722	Phage-related protein YomH	NA
UHGV-2118882_51	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-2118882_52	PHROG	phrog_538	minor tail protein	tail
UHGV-2118882_52	UniRef90	UniRef90_UPI001C113FEF	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-2118882_52	eggNOG-mapper	1121423.JONT01000035_gene906	Collagen triple helix repeat (20 copies)	NA
UHGV-2118882_52	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-2118882_52	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA
UHGV-2118882_52	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-2118882_53	PHROG	phrog_9534	head protein	head and packaging
UHGV-2118882_53	eggNOG-mapper	665956.HMPREF1032_02939	COG NOG18825 non supervised orthologous group	NA
UHGV-2118882_53	Structural annotation	PF18463, PF20747	NA	NA
UHGV-2118882_55	Structural annotation	PF16407	NA	NA
UHGV-2118882_56	PHROG	phrog_5302	tail protein	tail
UHGV-2118882_56	UniRef90	UniRef90_A0A1F8V1G3	BppU_N domain-containing protein	NA
UHGV-2118882_56	eggNOG-mapper	411470.RUMGNA_00248	Phage tail-collar fibre protein	NA
UHGV-2118882_56	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-2118882_57	PHROG	phrog_4912	tail fiber assembly	tail
UHGV-2118882_57	UniRef90	UniRef90_UPI0019223612	phage tail assembly chaperone	NA
UHGV-2118882_57	eggNOG-mapper	643562.Daes_0337	NA	NA
UHGV-2118882_57	Pfam	PF16778	Phage tail assembly chaperone protein	Phage_tail_APC
UHGV-2118882_57	Structural annotation	PF16778	NA	NA
UHGV-2118882_59	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-2118882_59	PHROG	phrog_10030	tail length tape measure protein	tail
UHGV-2118882_59	UniRef90	UniRef90_UPI0019599082	M23 family metallopeptidase	NA
UHGV-2118882_59	eggNOG-mapper	1122137.AQXF01000004_gene1863	COG0739 Membrane proteins related to metalloendopeptidases	NA
UHGV-2118882_59	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-2118882_59	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-2118882_59	Structural annotation	PF01551, NF040883	NA	NA
UHGV-2118882_60	PHROG	phrog_4105	NA	unknown function
UHGV-2118882_60	eggNOG-mapper	657322.FPR_27220	NA	NA
UHGV-2118882_61	PHROG	phrog_1129	holin	lysis
UHGV-2118882_61	UniRef90	UniRef90_UPI00051B7422	phage holin family protein	NA
UHGV-2118882_61	eggNOG-mapper	742733.HMPREF9469_05010	Phage holin family Hol44, in holin superfamily V	NA
UHGV-2118882_61	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-2118882_61	Structural annotation	PF16079	NA	NA
UHGV-2118882_62	eggNOG-mapper	78345.BMERY_0692	NA	NA
UHGV-2118882_62	Structural annotation	PF07825, NF040990, COG3311	NA	NA
UHGV-2118882_64	PHROG	phrog_3754	NA	unknown function
UHGV-2118882_64	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-2118882_65	PHROG	phrog_21718	NA	unknown function
UHGV-2118882_65	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-2118882_66	PHROG	phrog_22984	NA	unknown function
UHGV-2118882_67	PHROG	phrog_16490	NA	unknown function
UHGV-2118882_67	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-2118882_68	PHROG	phrog_20016	NA	unknown function
UHGV-2118882_68	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-2118882_68	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-2118882_68	Structural annotation	PF18573, NF033147	NA	NA
UHGV-2118882_69	Structural annotation	PF12510	NA	NA
UHGV-2118882_70	eggNOG-mapper	1226322.HMPREF1545_00079	NA	NA