UHGV-2119037

Genome information

Genome length 36,226 bps

CDS count 53

Completeness 97.31% (high-quality)

geNomad score 0.9762

Prediction confidence Confident

Genome information
Genome ID	UHGV-2119037
vOTU ID	vOTU-060055
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029605\|Ga0245145_100483\|provirus_11970_54226
BioSample	SAMEA3449197
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.31% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9762
Virus hallmark genes (geNomad)	15
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	24.29
Jumbo phage	No

Genome content
Genome length	36,226 bps
GC content	42.86%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	94.83%
Average CDS length	653.60 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2119037_1	Structural annotation	PF13384, NF001074, COG3677	NA	NA
UHGV-2119037_2	PHROG	phrog_18218	NA	unknown function
UHGV-2119037_2	UniRef90	UniRef90_A0A3E4LX14	Ribonuclease	NA
UHGV-2119037_2	eggNOG-mapper	658655.HMPREF0988_02546	NA	NA
UHGV-2119037_3	PHROG	phrog_937	hemolysin	other
UHGV-2119037_3	eggNOG-mapper	742740.HMPREF9474_03172	NA	NA
UHGV-2119037_4	UniRef90	UniRef90_U6F3B7	Structural protein	NA
UHGV-2119037_4	eggNOG-mapper	742733.HMPREF9469_05016	NA	NA
UHGV-2119037_4	Structural annotation	PF19789	NA	NA
UHGV-2119037_5	PHROG	phrog_1382	NA	unknown function
UHGV-2119037_5	eggNOG-mapper	411461.DORFOR_00727	NA	NA
UHGV-2119037_6	PHROG	phrog_12931	NA	unknown function
UHGV-2119037_6	eggNOG-mapper	411461.DORFOR_00728	NA	NA
UHGV-2119037_7	PHROG	phrog_13141	NA	unknown function
UHGV-2119037_7	UniRef90	UniRef90_UPI001570499E	H-type lectin domain-containing protein	NA
UHGV-2119037_7	eggNOG-mapper	411461.DORFOR_01178	NA	NA
UHGV-2119037_7	Structural annotation	PF20747, PF08931	NA	NA
UHGV-2119037_8	PHROG	phrog_538	minor tail protein	tail
UHGV-2119037_8	UniRef90	UniRef90_UPI001E2C8064	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-2119037_8	eggNOG-mapper	665950.HMPREF1025_02520	NA	NA
UHGV-2119037_8	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-2119037_8	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-2119037_9	UniRef90	UniRef90_UPI001EDFA8F1	phage tail protein	NA
UHGV-2119037_9	eggNOG-mapper	665950.HMPREF1025_02521	NA	NA
UHGV-2119037_9	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-2119037_10	KOfam	K20478	GOLGB1; golgin subfamily B member 1	NA
UHGV-2119037_10	PHROG	phrog_5218	NA	unknown function
UHGV-2119037_10	UniRef90	UniRef90_A0A414U8D6	PhageMin_Tail domain-containing protein	NA
UHGV-2119037_10	eggNOG-mapper	1235792.C808_03050	Phage-related minor tail protein	NA
UHGV-2119037_10	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-2119037_10	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-2119037_10	Structural annotation	PF10145, PF05384, NF033930, COG5280	NA	NA
UHGV-2119037_12	eggNOG-mapper	1123075.AUDP01000020_gene1519	NA	NA
UHGV-2119037_12	Structural annotation	PF11836	NA	NA
UHGV-2119037_13	PHROG	phrog_88	major tail protein	tail
UHGV-2119037_13	UniRef90	UniRef90_A0A174HJR5	Major tail protein	NA
UHGV-2119037_13	eggNOG-mapper	411459.RUMOBE_00930	NA	NA
UHGV-2119037_13	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-2119037_13	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-2119037_14	PHROG	phrog_88	major tail protein	tail
UHGV-2119037_14	UniRef90	UniRef90_A0A174HPA5	Phage major tail protein, phi13 family	NA
UHGV-2119037_14	eggNOG-mapper	97139.C824_05965	NA	NA
UHGV-2119037_14	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-2119037_14	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-2119037_15	PHROG	phrog_78	tail terminator	connector
UHGV-2119037_15	UniRef90	UniRef90_A0A2Z3TZD7	Prohead protease	NA
UHGV-2119037_15	eggNOG-mapper	1540257.JQMW01000004_gene412	NA	NA
UHGV-2119037_15	Structural annotation	PF05657, NF040576, COG3167	NA	NA
UHGV-2119037_16	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2119037_16	UniRef90	UniRef90_A0A1C5SVA8	Phage protein, HK97 gp10 family	NA
UHGV-2119037_16	eggNOG-mapper	411459.RUMOBE_00932	Phage protein, HK97 gp10 family	NA
UHGV-2119037_16	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-2119037_16	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-2119037_16	Structural annotation	TIGR01725	NA	NA
UHGV-2119037_17	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-2119037_17	UniRef90	UniRef90_A0A2V2GTA0	Phage head-tail adapter protein	NA
UHGV-2119037_17	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-2119037_17	COG	COG5614	Phage head-tail adaptor	NA
UHGV-2119037_17	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-2119037_18	PHROG	phrog_5223	neck protein	connector
UHGV-2119037_18	UniRef90	UniRef90_A0A7X6Q432	DNA-packaging protein	NA
UHGV-2119037_18	eggNOG-mapper	573061.Clocel_2435	NA	NA
UHGV-2119037_19	PHROG	phrog_10	major head protein	head and packaging
UHGV-2119037_19	UniRef90	UniRef90_A0A1C5SVG4	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2119037_19	eggNOG-mapper	1280689.AUJC01000011_gene1521	Phage major capsid protein, HK97 family	NA
UHGV-2119037_19	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2119037_19	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2119037_19	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2119037_19	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2119037_20	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-2119037_20	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-2119037_20	UniRef90	UniRef90_A0A174HPB7	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-2119037_20	eggNOG-mapper	1235793.C809_01919	Clp protease	NA
UHGV-2119037_20	Pfam	PF00574	Clp protease	CLP_protease
UHGV-2119037_20	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-2119037_20	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-2119037_21	PHROG	phrog_12	portal protein	head and packaging
UHGV-2119037_21	UniRef90	UniRef90_A0A174HQ03	Phage portal protein, HK97 family	NA
UHGV-2119037_21	eggNOG-mapper	1235793.C809_01918	Phage portal protein	NA
UHGV-2119037_21	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2119037_21	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2119037_21	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-2119037_22	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2119037_22	UniRef90	UniRef90_A0A174HN48	Phage terminase-like protein, large subunit	NA
UHGV-2119037_22	eggNOG-mapper	1235793.C809_01917	Phage Terminase	NA
UHGV-2119037_22	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-2119037_22	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2119037_22	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2119037_22	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-2119037_23	PHROG	phrog_1066	NA	unknown function
UHGV-2119037_23	eggNOG-mapper	411470.RUMGNA_02061	NA	NA
UHGV-2119037_23	Structural annotation	PF05119, TIGR01558	NA	NA
UHGV-2119037_24	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2119037_24	UniRef90	UniRef90_A0A174XSZ8	Prophage LambdaBa04, GP54	NA
UHGV-2119037_24	eggNOG-mapper	1203606.HMPREF1526_00983	HNH endonuclease	NA
UHGV-2119037_24	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2119037_25	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2119037_25	UniRef90	UniRef90_UPI001899709D	NA	NA
UHGV-2119037_25	eggNOG-mapper	658655.HMPREF0988_02569	sigma factor activity	NA
UHGV-2119037_25	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-2119037_25	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-2119037_25	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-2119037_26	AcrCatalog	cluster_12858	NA	NA
UHGV-2119037_28	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-2119037_28	UniRef90	UniRef90_UPI00189A61B2	Lar family restriction alleviation protein	NA
UHGV-2119037_29	eggNOG-mapper	457412.RSAG_01159	NA	NA
UHGV-2119037_31	Structural annotation	PF09889, MF_00649, COG4068	NA	NA
UHGV-2119037_32	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-2119037_32	PHROG	phrog_1	integrase	integration and excision
UHGV-2119037_32	UniRef90	UniRef90_A0A3D2TUS5	Integrase	NA
UHGV-2119037_32	eggNOG-mapper	1514668.JOOA01000001_gene378	Belongs to the 'phage' integrase family	NA
UHGV-2119037_32	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-2119037_32	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2119037_32	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-2119037_32	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-2119037_33	PHROG	phrog_7566	NA	unknown function
UHGV-2119037_33	eggNOG-mapper	665950.HMPREF1025_02547	NA	NA
UHGV-2119037_34	eggNOG-mapper	1196322.A370_05726	NA	NA
UHGV-2119037_35	PHROG	phrog_15077	NA	unknown function
UHGV-2119037_35	UniRef90	UniRef90_A0A3A6HZA9	NA	NA
UHGV-2119037_35	eggNOG-mapper	1280698.AUJS01000007_gene1019	NA	NA
UHGV-2119037_35	Structural annotation	PF11300, NF033725	NA	NA
UHGV-2119037_36	PHROG	phrog_8470	NA	unknown function
UHGV-2119037_36	UniRef90	UniRef90_UPI001C01E393	PcfJ domain-containing protein	NA
UHGV-2119037_36	eggNOG-mapper	1280698.AUJS01000007_gene1018	NA	NA
UHGV-2119037_36	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-2119037_36	Structural annotation	PF14284	NA	NA
UHGV-2119037_37	PHROG	phrog_4433	NA	unknown function
UHGV-2119037_37	eggNOG-mapper	1280698.AUJS01000007_gene1017	NA	NA
UHGV-2119037_37	Structural annotation	PF12120, NF000066	NA	NA
UHGV-2119037_38	eggNOG-mapper	1280698.AUJS01000007_gene1016	NA	NA
UHGV-2119037_39	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-2119037_39	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-2119037_39	UniRef90	UniRef90_A0A373MPV2	Ribonuclease HI	NA
UHGV-2119037_39	eggNOG-mapper	665950.HMPREF1025_02551	RNase H	NA
UHGV-2119037_39	Pfam	PF00075	RNase H	RNase_H
UHGV-2119037_39	COG	COG0328	Ribonuclease HI	NA
UHGV-2119037_40	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2119037_40	eggNOG-mapper	665950.HMPREF1025_02552	NA	NA
UHGV-2119037_40	Structural annotation	PF21578, NF041486	NA	NA
UHGV-2119037_42	KOfam	K14059	int; integrase	NA
UHGV-2119037_42	PHROG	phrog_1	integrase	integration and excision
UHGV-2119037_42	UniRef90	UniRef90_R9LR72	Tyr recombinase domain-containing protein	NA
UHGV-2119037_42	eggNOG-mapper	1235796.C815_01058	Belongs to the 'phage' integrase family	NA
UHGV-2119037_42	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-2119037_42	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2119037_42	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2119037_42	Structural annotation	PF00589, PF14659, MF_02055, NF001399, COG4974	NA	NA
UHGV-2119037_43	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-2119037_43	PHROG	phrog_5696	NA	unknown function
UHGV-2119037_43	UniRef90	UniRef90_A0A1C5WE14	Type I restriction-modification system methyltransferase subunit	NA
UHGV-2119037_43	eggNOG-mapper	1335760.ASTG01000023_gene576	N-6 DNA Methylase	NA
UHGV-2119037_43	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-2119037_43	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-2119037_43	Structural annotation	COG0286	NA	NA
UHGV-2119037_47	PHROG	phrog_750	NA	unknown function
UHGV-2119037_47	eggNOG-mapper	1231377.C426_1696	NA	NA
UHGV-2119037_47	Structural annotation	PF13835, NF040858	NA	NA
UHGV-2119037_49	eggNOG-mapper	665950.HMPREF1025_02561	sequence-specific DNA binding	NA
UHGV-2119037_49	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2119037_49	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2119037_49	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-2119037_50	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2119037_50	UniRef90	UniRef90_A0A844DZ87	Helix-turn-helix domain-containing protein	NA
UHGV-2119037_50	eggNOG-mapper	1235802.C823_04750	Helix-turn-helix XRE-family like proteins	NA
UHGV-2119037_50	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-2119037_50	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2119037_50	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-2119037_51	PHROG	phrog_87	metallo-protease	other
UHGV-2119037_51	UniRef90	UniRef90_A0A3A6G714	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-2119037_51	eggNOG-mapper	1235802.C823_04751	IrrE N-terminal-like domain	NA
UHGV-2119037_51	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-2119037_51	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-2119037_51	Structural annotation	PF06114, COG2856	NA	NA
UHGV-2119037_52	KOfam	K07504	K07504; predicted type IV restriction endonuclease	NA
UHGV-2119037_52	PHROG	phrog_4225	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2119037_52	UniRef90	UniRef90_UPI000463EE2B	type I restriction endonuclease	NA
UHGV-2119037_52	eggNOG-mapper	411462.DORLON_00821	Type I restriction enzyme R protein N terminus (HSDR_N)	NA
UHGV-2119037_52	Pfam	PF04313	Type I restriction enzyme R protein N terminus (HSDR_N)	HSDR_N
UHGV-2119037_52	COG	COG4748	NA	NA
UHGV-2119037_52	Structural annotation	PF13588, TIGR04256, COG4748	NA	NA
UHGV-2119037_53	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-2119037_53	PHROG	phrog_95	integrase	integration and excision
UHGV-2119037_53	UniRef90	UniRef90_A5KP69	Resolvase, N-terminal domain protein	NA
UHGV-2119037_53	eggNOG-mapper	411460.RUMTOR_02053	COG COG1961 Site-specific recombinases, DNA invertase Pin homologs	NA
UHGV-2119037_53	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-2119037_53	Pfam	PF07508	Recombinase	Recombinase
UHGV-2119037_53	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-2119037_53	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-2119037_53	Structural annotation	PF00239, PF07508, PF13408, NF041201, COG1961	NA	NA