UHGV-2119464

Genome information

Genome length 33,059 bps

CDS count 59

Completeness 99.74% (high-quality)

geNomad score 0.9535

Prediction confidence Confident

Genome information
Genome ID	UHGV-2119464
vOTU ID	vOTU-008267
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029571\|Ga0244922_100198\|provirus_47945_81003
BioSample	SAMEA3708766
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.74% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	24
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9535
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	48.74
Jumbo phage	No

Genome content
Genome length	33,059 bps
GC content	30.79%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	59
CDS density	89.82%
Average CDS length	505.48 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2119464_1	KOfam	K14059	int; integrase	NA
UHGV-2119464_1	PHROG	phrog_1	integrase	integration and excision
UHGV-2119464_1	UniRef90	UniRef90_A0A416DTM9	Tyr recombinase domain-containing protein	NA
UHGV-2119464_1	eggNOG-mapper	1504823.CCMM01000008_gene1083	DNA integration	NA
UHGV-2119464_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2119464_1	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-2119464_5	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-2119464_5	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-2119464_5	UniRef90	UniRef90_A0A415XG42	XRE family transcriptional regulator	NA
UHGV-2119464_5	eggNOG-mapper	1504823.CCMM01000010_gene1370	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-2119464_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2119464_5	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-2119464_5	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-2119464_5	Structural annotation	PF00717, PF12844, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-2119464_6	UniRef90	UniRef90_A0A416FVZ1	XRE family transcriptional regulator	NA
UHGV-2119464_6	eggNOG-mapper	1034347.CAHJ01000051_gene30	NA	NA
UHGV-2119464_6	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-2119464_9	PHROG	phrog_2232	NA	unknown function
UHGV-2119464_9	UniRef90	UniRef90_A0A415XFC3	NA	NA
UHGV-2119464_9	eggNOG-mapper	1095737.HMPREF1110_1198	NA	NA
UHGV-2119464_9	Pfam	PF14337	Abortive infection alpha	Abi_alpha
UHGV-2119464_9	Structural annotation	PF14337, TIGR03899	NA	NA
UHGV-2119464_10	Structural annotation	PF07408, MF_01560, NF010187, COG4838	NA	NA
UHGV-2119464_12	UniRef90	UniRef90_A0A415XFB8	DNA-binding protein	NA
UHGV-2119464_14	PHROG	phrog_22529	NA	unknown function
UHGV-2119464_14	UniRef90	UniRef90_A0A415XFC2	3D domain-containing protein	NA
UHGV-2119464_14	eggNOG-mapper	411459.RUMOBE_01350	3D domain	NA
UHGV-2119464_14	Pfam	PF06725	3D domain	3D
UHGV-2119464_14	COG	COG3584	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	NA
UHGV-2119464_14	Structural annotation	PF06725, COG3584	NA	NA
UHGV-2119464_16	PHROG	phrog_1029	NA	unknown function
UHGV-2119464_16	eggNOG-mapper	445974.CLORAM_02952	NA	NA
UHGV-2119464_16	Structural annotation	PF10065, COG5532	NA	NA
UHGV-2119464_17	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-2119464_18	PHROG	phrog_15768	NA	unknown function
UHGV-2119464_18	UniRef90	UniRef90_A0A417IQT8	NA	NA
UHGV-2119464_18	eggNOG-mapper	1158294.JOMI01000009_gene1122	NA	NA
UHGV-2119464_18	Pfam	PF19808	NA	DUF6291
UHGV-2119464_20	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-2119464_20	PHROG	phrog_216	integrase	integration and excision
UHGV-2119464_20	UniRef90	UniRef90_A0A415XFD4	Tyr recombinase domain-containing protein	NA
UHGV-2119464_20	eggNOG-mapper	1232446.BAIE02000011_gene1620	Integrase	NA
UHGV-2119464_20	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2119464_20	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2119464_20	Structural annotation	PF00589, MF_02055, NF040815, COG4973	NA	NA
UHGV-2119464_21	PHROG	phrog_2044	RNA polymerase beta subunit	DNA, RNA and nucleotide metabolism
UHGV-2119464_21	UniRef90	UniRef90_A0A4D6BGB6	Putative DNA-directed RNA polymerase	NA
UHGV-2119464_21	eggNOG-mapper	999413.HMPREF1094_00228	NA	NA
UHGV-2119464_21	Structural annotation	MF_00337, NF010671, COG1722	NA	NA
UHGV-2119464_22	PHROG	phrog_1891	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2119464_22	UniRef90	UniRef90_A0A415XFC7	HNH endonuclease	NA
UHGV-2119464_22	eggNOG-mapper	999413.HMPREF1094_00227	HNH endonuclease	NA
UHGV-2119464_22	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-2119464_22	Structural annotation	PF13392	NA	NA
UHGV-2119464_23	PHROG	phrog_173	nucleoside triphosphate pyrophosphohydrolase	DNA, RNA and nucleotide metabolism
UHGV-2119464_23	UniRef90	UniRef90_UPI001C25836D	dUTPase	NA
UHGV-2119464_23	eggNOG-mapper	221109.22777829	dUTPase	NA
UHGV-2119464_23	Pfam	PF08761	dUTPase	dUTPase_2
UHGV-2119464_23	COG	COG4508	Dimeric dUTPase, all-alpha-NTP-PPase (MazG) superfamily	NA
UHGV-2119464_23	Structural annotation	PF08761, COG4508	NA	NA
UHGV-2119464_27	Structural annotation	TIGR01636	NA	NA
UHGV-2119464_29	PHROG	phrog_338	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2119464_29	UniRef90	UniRef90_A0A415XFF8	HNH endonuclease	NA
UHGV-2119464_29	eggNOG-mapper	1232446.BAIE02000011_gene1603	HNH endonuclease domain protein	NA
UHGV-2119464_29	Pfam	PF01844	HNH endonuclease	HNH
UHGV-2119464_29	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2119464_30	PHROG	phrog_104	portal protein	head and packaging
UHGV-2119464_30	UniRef90	UniRef90_A0A415XFD5	Phage portal protein	NA
UHGV-2119464_30	eggNOG-mapper	1232446.BAIE02000011_gene1602	Phage portal protein, SPP1 Gp6-like	NA
UHGV-2119464_30	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-2119464_31	PHROG	phrog_2494	minor head protein	head and packaging
UHGV-2119464_31	UniRef90	UniRef90_UPI001C2C9BDC	ADP-ribosyltransferase	NA
UHGV-2119464_31	eggNOG-mapper	1232446.BAIE02000011_gene1601	cell adhesion	NA
UHGV-2119464_31	COG	COG2369	NA	NA
UHGV-2119464_33	eggNOG-mapper	1033737.CAEV01000076_gene515	NA	NA
UHGV-2119464_34	PHROG	phrog_1233	NA	unknown function
UHGV-2119464_34	eggNOG-mapper	936375.HMPREF1152_1074	NA	NA
UHGV-2119464_34	Structural annotation	PF13058	NA	NA
UHGV-2119464_35	Structural annotation	PF21485	NA	NA
UHGV-2119464_36	PHROG	phrog_17688	NA	unknown function
UHGV-2119464_36	UniRef90	UniRef90_A0A415XFD7	Terminase	NA
UHGV-2119464_36	eggNOG-mapper	938278.CAJO01000051_gene790	phage terminase, large subunit	NA
UHGV-2119464_36	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2119464_36	Structural annotation	PF20441, PF03354, MF_04146, NF033889, COG4626	NA	NA
UHGV-2119464_37	PHROG	phrog_233	head scaffolding protein	head and packaging
UHGV-2119464_37	UniRef90	UniRef90_A0A415XFD9	NA	NA
UHGV-2119464_37	eggNOG-mapper	1232446.BAIE02000011_gene1597	NA	NA
UHGV-2119464_37	Pfam	PF14265	NA	DUF4355
UHGV-2119464_37	Structural annotation	PF14265	NA	NA
UHGV-2119464_38	PHROG	phrog_32396	NA	unknown function
UHGV-2119464_38	UniRef90	UniRef90_A0A415XFE1	Phage major capsid protein	NA
UHGV-2119464_38	eggNOG-mapper	665950.HMPREF1025_02530	Phage capsid family	NA
UHGV-2119464_38	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2119464_38	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2119464_38	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2119464_40	PHROG	phrog_137	head-tail adaptor Ad1	connector
UHGV-2119464_40	UniRef90	UniRef90_A0A1C6EGQ6	Phage protein Gp19/Gp15/Gp42	NA
UHGV-2119464_40	eggNOG-mapper	1232446.BAIE02000011_gene1595	Phage protein Gp19/Gp15/Gp42	NA
UHGV-2119464_40	Pfam	PF09355	NA	Phage_Gp19
UHGV-2119464_40	Structural annotation	PF09355	NA	NA
UHGV-2119464_41	PHROG	phrog_501	head closure Hc1	connector
UHGV-2119464_41	UniRef90	UniRef90_R5J5U6	ORF34	NA
UHGV-2119464_41	eggNOG-mapper	1121864.OMO_02155	NA	NA
UHGV-2119464_41	Structural annotation	PF12206, COG5614	NA	NA
UHGV-2119464_42	PHROG	phrog_387	neck protein	connector
UHGV-2119464_42	eggNOG-mapper	936375.HMPREF1152_0683	NA	NA
UHGV-2119464_43	PHROG	phrog_123	tail terminator	connector
UHGV-2119464_43	UniRef90	UniRef90_A0A139QID5	Phage-associated protein	NA
UHGV-2119464_43	eggNOG-mapper	873448.STRPO_0290	NA	NA
UHGV-2119464_43	Structural annotation	PF06141	NA	NA
UHGV-2119464_44	PHROG	phrog_117	major tail protein	tail
UHGV-2119464_44	UniRef90	UniRef90_A0A415XFH4	Phage tail protein	NA
UHGV-2119464_44	eggNOG-mapper	1232446.BAIE02000011_gene1591	domain, Protein	NA
UHGV-2119464_44	COG	COG5492	NA	NA
UHGV-2119464_44	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-2119464_45	PHROG	phrog_1526	NA	unknown function
UHGV-2119464_45	UniRef90	UniRef90_D2BQF7	NA	NA
UHGV-2119464_45	eggNOG-mapper	1231377.C426_1729	NA	NA
UHGV-2119464_46	PHROG	phrog_1633	NA	unknown function
UHGV-2119464_46	UniRef90	UniRef90_UPI000A18F792	NA	NA
UHGV-2119464_46	eggNOG-mapper	873448.STRPO_0293	NA	NA
UHGV-2119464_46	Pfam	PF17318	NA	DUF5361
UHGV-2119464_46	Structural annotation	PF17318	NA	NA
UHGV-2119464_47	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-2119464_47	UniRef90	UniRef90_UPI000E548070	PblA	NA
UHGV-2119464_47	eggNOG-mapper	1232446.BAIE02000011_gene1587	domain protein	NA
UHGV-2119464_47	COG	COG1511	NA	NA
UHGV-2119464_47	Structural annotation	PF20155, MF_04138, COG5281	NA	NA
UHGV-2119464_48	UniRef90	UniRef90_UPI001F242491	phage tail family protein	NA
UHGV-2119464_48	eggNOG-mapper	1232446.BAIE02000011_gene1585	NA	NA
UHGV-2119464_48	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-2119464_49	PHROG	phrog_538	minor tail protein	tail
UHGV-2119464_49	UniRef90	UniRef90_A0A1C5PP83	Phage-related holin (Lysis protein)	NA
UHGV-2119464_49	eggNOG-mapper	1232446.BAIE02000011_gene1584	NA	NA
UHGV-2119464_49	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-2119464_50	PHROG	phrog_9994	NA	unknown function
UHGV-2119464_50	eggNOG-mapper	1232446.BAIE02000011_gene1583	NA	NA
UHGV-2119464_50	Structural annotation	PF20747	NA	NA
UHGV-2119464_52	PHROG	phrog_24103	NA	unknown function
UHGV-2119464_52	eggNOG-mapper	665956.HMPREF1032_02937	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-2119464_52	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-2119464_55	PHROG	phrog_443	holin	lysis
UHGV-2119464_55	UniRef90	UniRef90_UPI00197EA853	holin	NA
UHGV-2119464_55	eggNOG-mapper	469596.HMPREF9488_02591	Putative lactococcus lactis phage r1t holin	NA
UHGV-2119464_55	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-2119464_55	Structural annotation	PF16945	NA	NA
UHGV-2119464_56	PHROG	phrog_1863	NA	unknown function
UHGV-2119464_56	eggNOG-mapper	1232449.BAHV02000017_gene1511	NA	NA
UHGV-2119464_57	PHROG	phrog_872	NA	unknown function
UHGV-2119464_57	eggNOG-mapper	397290.C810_05225	NA	NA
UHGV-2119464_57	dbAPIS	APIS052	NA	NA
UHGV-2119464_58	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2119464_58	PHROG	phrog_35436	amidase	lysis
UHGV-2119464_58	UniRef90	UniRef90_UPI00041018D3	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2119464_58	eggNOG-mapper	1504823.CCMM01000008_gene1019	Ami_2	NA
UHGV-2119464_58	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-2119464_58	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-2119464_58	Structural annotation	PF01510, PF18342, MF_04111, NF008758, COG3023, COG4991	NA	NA
UHGV-2119464_59	KOfam	K16904	DCTPP1; dCTP diphosphatase [EC:3.6.1.12]	NA
UHGV-2119464_59	UniRef90	UniRef90_R5Q6U3	Predicted pyrophosphatase	NA
UHGV-2119464_59	eggNOG-mapper	1504823.CCMM01000008_gene730	Mazg nucleotide pyrophosphohydrolase	NA
UHGV-2119464_59	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA