UHGV-2119631

Genome information

vOTU vOTU-041966

Genome length 21,134 bps

CDS count 33

Completeness 52.17% (medium-quality)

geNomad score 0.9348

Prediction confidence Confident

Genome information
Genome ID	UHGV-2119631
vOTU ID	vOTU-041966
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029582\|Ga0245118_100139\|provirus_2_21135
BioSample	SAMEA3449170
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	52.17% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9348
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	50.78
Jumbo phage	No

Genome content
Genome length	21,134 bps
GC content	57.58%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	33
CDS density	96.44%
Average CDS length	624.82 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2119631_1	PHROG	phrog_184	DNA circularization	DNA, RNA and nucleotide metabolism
UHGV-2119631_1	UniRef90	UniRef90_R7I967	DNA_circ_N domain-containing protein	NA
UHGV-2119631_1	eggNOG-mapper	742821.HMPREF9464_01823	DNA circularisation protein N-terminus	NA
UHGV-2119631_1	Pfam	PF07157	DNA circularisation protein N-terminus	DNA_circ_N
UHGV-2119631_1	COG	COG4228	Mu-like prophage DNA circulation protein	NA
UHGV-2119631_2	PHROG	phrog_3981	tail length tape measure protein	tail
UHGV-2119631_2	UniRef90	UniRef90_A0A6L6YME8	Phage tail tape measure protein	NA
UHGV-2119631_2	eggNOG-mapper	1122135.KB893169_gene2496	phage tail tape measure protein	NA
UHGV-2119631_2	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-2119631_2	COG	COG5412	Phage-related protein	NA
UHGV-2119631_4	Pfam	PF10109	Phage tail assembly chaperone proteins, E, or 41 or 14	Phage_TAC_7
UHGV-2119631_5	PHROG	phrog_185	tail tube protein	tail
UHGV-2119631_5	UniRef90	UniRef90_A0A6L6YJW8	Phage tail protein	NA
UHGV-2119631_5	eggNOG-mapper	742821.HMPREF9464_01826	Phage tail tube protein	NA
UHGV-2119631_5	Pfam	PF10618	Phage tail tube protein	Tail_tube
UHGV-2119631_5	Structural annotation	PF10618, TIGR02241, COG3498	NA	NA
UHGV-2119631_6	PHROG	phrog_165	tail sheath	tail
UHGV-2119631_6	UniRef90	UniRef90_R7I957	Mu tail sheath family protein	NA
UHGV-2119631_6	eggNOG-mapper	742821.HMPREF9464_01827	tail sheath	NA
UHGV-2119631_6	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-2119631_6	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-2119631_6	COG	COG4386	Mu-like prophage tail sheath protein gpL	NA
UHGV-2119631_6	Structural annotation	PF10758, COG4386	NA	NA
UHGV-2119631_7	PHROG	phrog_209	portal protein	head and packaging
UHGV-2119631_7	eggNOG-mapper	29486.NJ56_17665	NA	NA
UHGV-2119631_7	Structural annotation	PF09646	NA	NA
UHGV-2119631_8	PHROG	phrog_879	tail completion or Neck1 protein	connector
UHGV-2119631_8	UniRef90	UniRef90_A0A7U6JN97	Putative membrane protein	NA
UHGV-2119631_8	eggNOG-mapper	1042876.PPS_1254	NA	NA
UHGV-2119631_8	Structural annotation	TIGR01725	NA	NA
UHGV-2119631_9	PHROG	phrog_25	head closure Hc1	connector
UHGV-2119631_9	UniRef90	UniRef90_A0A7Y1FS28	Phage head closure protein	NA
UHGV-2119631_9	eggNOG-mapper	742821.HMPREF9464_01829	Phage head-tail joining protein	NA
UHGV-2119631_9	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-2119631_9	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-2119631_9	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-2119631_10	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-2119631_10	UniRef90	UniRef90_A0A853IME7	Phage gp6-like head-tail connector protein	NA
UHGV-2119631_10	eggNOG-mapper	742821.HMPREF9464_01830	Phage gp6-like head-tail connector protein	NA
UHGV-2119631_10	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-2119631_10	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-2119631_10	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-2119631_12	PHROG	phrog_10	major head protein	head and packaging
UHGV-2119631_12	UniRef90	UniRef90_A0A5B7ZMF6	Phage major capsid protein	NA
UHGV-2119631_12	eggNOG-mapper	742821.HMPREF9464_01831	Phage capsid family	NA
UHGV-2119631_12	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2119631_12	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2119631_12	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2119631_12	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2119631_13	KOfam	K06904	NA	NA
UHGV-2119631_13	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-2119631_13	UniRef90	UniRef90_A0A5B7ZLN2	HK97 family phage prohead protease	NA
UHGV-2119631_13	eggNOG-mapper	742821.HMPREF9464_01832	Caudovirus prohead serine protease	NA
UHGV-2119631_13	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-2119631_13	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-2119631_13	COG	COG3740	Phage head maturation protease	NA
UHGV-2119631_13	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-2119631_14	PHROG	phrog_12	portal protein	head and packaging
UHGV-2119631_14	UniRef90	UniRef90_A0A5B7ZK00	Phage portal protein	NA
UHGV-2119631_14	eggNOG-mapper	742821.HMPREF9464_01833	Phage portal protein	NA
UHGV-2119631_14	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2119631_14	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-2119631_14	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2119631_14	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-2119631_15	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2119631_15	UniRef90	UniRef90_UPI0006710F9A	terminase large subunit	NA
UHGV-2119631_15	eggNOG-mapper	742821.HMPREF9464_01834	Terminase	NA
UHGV-2119631_15	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-2119631_15	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2119631_15	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2119631_15	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-2119631_16	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-2119631_16	UniRef90	UniRef90_UPI000DE972B2	phage terminase small subunit P27 family	NA
UHGV-2119631_16	eggNOG-mapper	1454004.AW11_02579	phage terminase small subunit	NA
UHGV-2119631_16	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-2119631_16	COG	COG3747	Phage terminase, small subunit	NA
UHGV-2119631_16	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-2119631_19	Structural annotation	PF06530, NF006930, COG1595	NA	NA
UHGV-2119631_20	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-2119631_20	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2119631_20	UniRef90	UniRef90_R7IL81	Crossover junction endodeoxyribonuclease RusA	NA
UHGV-2119631_20	eggNOG-mapper	411470.RUMGNA_02196	COG COG4570 Holliday junction resolvase	NA
UHGV-2119631_20	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-2119631_20	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-2119631_20	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-2119631_23	PHROG	phrog_678	replication initiation O-like	DNA, RNA and nucleotide metabolism
UHGV-2119631_23	UniRef90	UniRef90_A0A6J5PRC2	Helix-turn-helix domain containing protein	NA
UHGV-2119631_23	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-2119631_23	Structural annotation	PF13730, MF_01819, TIGR01610, COG5529	NA	NA
UHGV-2119631_24	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-2119631_24	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-2119631_24	UniRef90	UniRef90_UPI0012BC92CF	XRE family transcriptional regulator	NA
UHGV-2119631_24	eggNOG-mapper	762966.HMPREF9439_01015	Helix-turn-helix XRE-family like proteins	NA
UHGV-2119631_24	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-2119631_24	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-2119631_24	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-2119631_24	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-2119631_27	PHROG	phrog_2324	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2119631_27	UniRef90	UniRef90_UPI001C62BAB2	ERF family protein	NA
UHGV-2119631_27	eggNOG-mapper	1123276.KB893279_gene2211	Erf family	NA
UHGV-2119631_27	Pfam	PF04404	ERF superfamily	ERF
UHGV-2119631_27	Structural annotation	PF04404, COG5055	NA	NA
UHGV-2119631_28	KOfam	K01143	exo; exodeoxyribonuclease (lambda-induced) [EC:3.1.11.3]	NA
UHGV-2119631_28	PHROG	phrog_149	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-2119631_28	UniRef90	UniRef90_A0A415CGP2	Exonuclease	NA
UHGV-2119631_28	eggNOG-mapper	382640.BT_0376	Exonuclease (EC 3.1.11.3) (P03697 of bacteriophage lambda)	NA
UHGV-2119631_28	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-2119631_28	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-2119631_28	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-2119631_30	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-2119631_30	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2119631_30	UniRef90	UniRef90_A0A388SB36	Single-stranded DNA-binding protein	NA
UHGV-2119631_30	eggNOG-mapper	1203554.HMPREF1476_02173	Single-strand binding protein family	NA
UHGV-2119631_30	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-2119631_30	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-2119631_30	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2119631_30	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-2119631_30	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-2119631_33	KOfam	K14059	int; integrase	NA
UHGV-2119631_33	PHROG	phrog_1	integrase	integration and excision
UHGV-2119631_33	UniRef90	UniRef90_F3QJ78	Site-specific recombinase, phage integrase family	NA
UHGV-2119631_33	eggNOG-mapper	469610.HMPREF0189_01147	Belongs to the 'phage' integrase family	NA
UHGV-2119631_33	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2119631_33	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2119631_33	Structural annotation	PF00589, MF_01808, TIGR02224, COG4974	NA	NA