UHGV-2119762

Genome information

Genome length 34,064 bps

CDS count 47

Completeness 90.18% (high-quality)

geNomad score 0.9662

Prediction confidence Confident

Genome information
Genome ID	UHGV-2119762
vOTU ID	vOTU-076344
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029594\|Ga0245142_100250\|provirus_1_34064
BioSample	NA
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	90.18% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9662
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	18.72
Jumbo phage	No

Genome content
Genome length	34,064 bps
GC content	50.69%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	47
CDS density	91.69%
Average CDS length	668.94 bps
tRNA count	3
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2119762_2	Structural annotation	PF10651, NF009453	NA	NA
UHGV-2119762_3	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-2119762_3	UniRef90	UniRef90_UPI000CF99656	phage tail protein	NA
UHGV-2119762_3	eggNOG-mapper	1160721.RBI_I01574	Prophage endopeptidase tail	NA
UHGV-2119762_3	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-2119762_3	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-2119762_3	COG	COG4926	Phage-related protein	NA
UHGV-2119762_3	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-2119762_4	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-2119762_4	UniRef90	UniRef90_UPI00164BA811	phage tail family protein	NA
UHGV-2119762_4	eggNOG-mapper	1444306.JFZC01000034_gene2623	tail component	NA
UHGV-2119762_4	COG	COG4722	Phage-related protein YomH	NA
UHGV-2119762_4	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-2119762_5	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-2119762_5	UniRef90	UniRef90_A0A316QKN8	Phage tail protein (Fragment)	NA
UHGV-2119762_5	eggNOG-mapper	1230342.CTM_17027	tape measure	NA
UHGV-2119762_5	COG	COG5185	Chromosome segregation protein NDC80, interacts with SMC proteins	NA
UHGV-2119762_5	Structural annotation	PF05537, MF_04138, COG5281	NA	NA
UHGV-2119762_6	Structural annotation	PF11836	NA	NA
UHGV-2119762_7	PHROG	phrog_88	major tail protein	tail
UHGV-2119762_7	UniRef90	UniRef90_UPI001D07B441	major tail protein	NA
UHGV-2119762_7	eggNOG-mapper	411459.RUMOBE_00930	NA	NA
UHGV-2119762_7	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-2119762_7	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-2119762_8	PHROG	phrog_78	tail terminator	connector
UHGV-2119762_8	eggNOG-mapper	1238184.CM001792_gene2512	NA	NA
UHGV-2119762_8	Structural annotation	PF05657, NF040576, COG3167	NA	NA
UHGV-2119762_9	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2119762_9	UniRef90	UniRef90_A0A174CK72	Phage protein, HK97 gp10 family	NA
UHGV-2119762_9	eggNOG-mapper	1195236.CTER_5108	Phage protein, HK97 gp10 family	NA
UHGV-2119762_9	Structural annotation	TIGR01725	NA	NA
UHGV-2119762_10	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-2119762_10	eggNOG-mapper	457396.CSBG_01051	head-tail adaptor	NA
UHGV-2119762_10	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-2119762_10	COG	COG5614	Phage head-tail adaptor	NA
UHGV-2119762_11	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-2119762_11	UniRef90	UniRef90_UPI0006544DF9	head-tail connector protein	NA
UHGV-2119762_11	eggNOG-mapper	1274524.BSONL12_06143	Phage gp6-like head-tail connector protein	NA
UHGV-2119762_11	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-2119762_11	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-2119762_11	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-2119762_12	PHROG	phrog_10	major head protein	head and packaging
UHGV-2119762_12	UniRef90	UniRef90_UPI000C7BECD8	phage major capsid protein	NA
UHGV-2119762_12	eggNOG-mapper	1414720.CBYM010000002_gene572	Phage major capsid protein, HK97 family	NA
UHGV-2119762_12	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2119762_12	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2119762_12	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2119762_12	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2119762_13	PHROG	phrog_16951	NA	unknown function
UHGV-2119762_13	eggNOG-mapper	246199.CUS_7602	NA	NA
UHGV-2119762_13	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-2119762_14	PHROG	phrog_12	portal protein	head and packaging
UHGV-2119762_14	UniRef90	UniRef90_UPI001C11FE4E	phage portal protein	NA
UHGV-2119762_14	eggNOG-mapper	634956.Geoth_0787	Phage portal protein	NA
UHGV-2119762_14	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2119762_14	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-2119762_14	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2119762_14	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-2119762_15	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2119762_15	UniRef90	UniRef90_UPI000C7CE66A	terminase large subunit	NA
UHGV-2119762_15	eggNOG-mapper	742738.HMPREF9460_04067	Phage terminase-like protein large subunit	NA
UHGV-2119762_15	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-2119762_15	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2119762_15	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2119762_15	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-2119762_16	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-2119762_16	UniRef90	UniRef90_UPI00067FA7FA	phage terminase small subunit P27 family	NA
UHGV-2119762_16	eggNOG-mapper	536232.CLM_2059	Phage terminase, small subunit	NA
UHGV-2119762_16	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-2119762_16	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-2119762_16	COG	COG3747	Phage terminase, small subunit	NA
UHGV-2119762_16	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-2119762_17	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-2119762_17	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2119762_17	UniRef90	UniRef90_UPI0006D7C695	HNH endonuclease	NA
UHGV-2119762_17	eggNOG-mapper	1508644.SFBmNL_01550	HNH endonuclease	NA
UHGV-2119762_17	Pfam	PF01844	HNH endonuclease	HNH
UHGV-2119762_17	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2119762_17	Structural annotation	PF05766	NA	NA
UHGV-2119762_18	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2119762_18	Structural annotation	PF07374, MF_00674, NF008895, COG1342	NA	NA
UHGV-2119762_22	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2119762_22	eggNOG-mapper	537013.CLOSTMETH_02141	NA	NA
UHGV-2119762_22	Structural annotation	PF21578, MF_00360	NA	NA
UHGV-2119762_23	PHROG	phrog_24518	NA	unknown function
UHGV-2119762_23	eggNOG-mapper	693746.OBV_25370	NA	NA
UHGV-2119762_24	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-2119762_24	PHROG	phrog_1	integrase	integration and excision
UHGV-2119762_24	UniRef90	UniRef90_R6NAU8	Site-specific recombinase phage integrase family	NA
UHGV-2119762_24	eggNOG-mapper	596330.HMPREF0628_0591	Belongs to the 'phage' integrase family	NA
UHGV-2119762_24	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-2119762_24	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2119762_24	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-2119762_24	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-2119762_25	PHROG	phrog_5696	NA	unknown function
UHGV-2119762_25	UniRef90	UniRef90_UPI001B3C9C54	N-6 DNA methylase	NA
UHGV-2119762_25	eggNOG-mapper	397291.C804_06560	N-6 DNA Methylase	NA
UHGV-2119762_25	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-2119762_25	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-2119762_25	Structural annotation	COG0286	NA	NA
UHGV-2119762_29	KOfam	K18831	higA; HTH-type transcriptional regulator / antitoxin HigA	NA
UHGV-2119762_29	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2119762_29	eggNOG-mapper	537013.CLOSTMETH_02010	Helix-turn-helix XRE-family like proteins	NA
UHGV-2119762_29	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2119762_29	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-2119762_30	PHROG	phrog_15609	NA	unknown function
UHGV-2119762_30	UniRef90	UniRef90_A0A3A6ESC2	NA	NA
UHGV-2119762_30	eggNOG-mapper	641112.ACOK01000073_gene2872	NA	NA
UHGV-2119762_30	Pfam	PF11300	NA	DUF3102
UHGV-2119762_30	Structural annotation	PF11300, NF038070	NA	NA
UHGV-2119762_31	PHROG	phrog_8470	NA	unknown function
UHGV-2119762_31	UniRef90	UniRef90_UPI001C0B00D9	PcfJ domain-containing protein	NA
UHGV-2119762_31	eggNOG-mapper	649747.HMPREF0083_05326	PcfJ-like protein	NA
UHGV-2119762_31	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-2119762_31	Structural annotation	PF14284	NA	NA
UHGV-2119762_32	Pfam	PF14058	PcfK-like protein	PcfK
UHGV-2119762_33	PHROG	phrog_824	NA	unknown function
UHGV-2119762_33	UniRef90	UniRef90_A0A3D5TLJ2	VRR-NUC domain-containing protein	NA
UHGV-2119762_33	eggNOG-mapper	1235792.C808_00075	VRR_NUC	NA
UHGV-2119762_33	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-2119762_33	Structural annotation	PF08774, COG1996	NA	NA
UHGV-2119762_37	PHROG	phrog_22040	NA	unknown function
UHGV-2119762_37	Structural annotation	PF07073, COG4568	NA	NA
UHGV-2119762_40	KOfam	K01449	cwlJ, sleB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2119762_40	PHROG	phrog_18750	NA	unknown function
UHGV-2119762_40	UniRef90	UniRef90_A0A3D5TM41	Hydrolase_2 domain-containing protein	NA
UHGV-2119762_40	eggNOG-mapper	1203606.HMPREF1526_01876	Cell wall hydrolase	NA
UHGV-2119762_40	Pfam	PF07486	Cell Wall Hydrolase	Hydrolase_2
UHGV-2119762_40	COG	COG3773	Cell wall hydrolase CwlJ, involved in spore germination	NA
UHGV-2119762_40	Structural annotation	PF07486, TIGR02869, COG3773	NA	NA
UHGV-2119762_42	PHROG	phrog_6058	NA	unknown function
UHGV-2119762_42	eggNOG-mapper	693746.OBV_19810	NA	NA
UHGV-2119762_43	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2119762_43	UniRef90	UniRef90_A0A2N0ULV0	Helix-turn-helix domain protein	NA
UHGV-2119762_43	eggNOG-mapper	1211844.CBLM010000016_gene1521	Helix-turn-helix XRE-family like proteins	NA
UHGV-2119762_43	Pfam	PF07022	Bacteriophage CI repressor helix-turn-helix domain	Phage_CI_repr
UHGV-2119762_44	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-2119762_44	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-2119762_44	UniRef90	UniRef90_R5L1M5	DNA-binding helix-turn-helix / peptidase S24-like multi-domain protein	NA
UHGV-2119762_44	eggNOG-mapper	634956.Geoth_0743	Peptidase S24-like	NA
UHGV-2119762_44	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2119762_44	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-2119762_44	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-2119762_44	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-2119762_45	Structural annotation	PF08797, TIGR00086	NA	NA
UHGV-2119762_46	KOfam	K14059	int; integrase	NA
UHGV-2119762_46	PHROG	phrog_1	integrase	integration and excision
UHGV-2119762_46	UniRef90	UniRef90_A0A7K4BXA9	Site-specific integrase	NA
UHGV-2119762_46	eggNOG-mapper	693746.OBV_19730	Belongs to the 'phage' integrase family	NA
UHGV-2119762_46	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2119762_46	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-2119762_46	Structural annotation	PF00589, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-2119762_47	KOfam	K05989	ramA; alpha-L-rhamnosidase [EC:3.2.1.40]	NA
UHGV-2119762_47	UniRef90	UniRef90_R6I886	Alpha-L-rhamnosidase	NA
UHGV-2119762_47	eggNOG-mapper	180332.JTGN01000005_gene2979	Alpha-L-rhamnosidase N-terminal domain protein	NA
UHGV-2119762_47	Pfam	PF08531	Alpha-L-rhamnosidase N-terminal domain	Bac_rhamnosid_N
UHGV-2119762_47	Pfam	PF05592	Bacterial alpha-L-rhamnosidase concanavalin-like domain	Bac_rhamnosid
UHGV-2119762_47	Pfam	PF17389	Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain	Bac_rhamnosid6H
UHGV-2119762_47	Pfam	PF17390	Bacterial alpha-L-rhamnosidase C-terminal domain	Bac_rhamnosid_C
UHGV-2119762_47	COG	COG3408	Glycogen debranching enzyme (alpha-1,6-glucosidase)	NA