UHGV-2120107

Genome information

Genome length 40,204 bps

CDS count 58

Completeness 99.73% (high-quality)

geNomad score 0.9780

Prediction confidence Confident

Genome information
Genome ID	UHGV-2120107
vOTU ID	vOTU-010243
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029604\|Ga0245147_100533\|provirus_4383_44586
BioSample	SAMEA3449199
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.73% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9780
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.12
Jumbo phage	No

Genome content
Genome length	40,204 bps
GC content	44.37%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	92.23%
Average CDS length	644.38 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2120107_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-2120107_1	PHROG	phrog_95	integrase	integration and excision
UHGV-2120107_1	UniRef90	UniRef90_A0A1C5PH07	Recombinase	NA
UHGV-2120107_1	eggNOG-mapper	33035.JPJF01000109_gene439	Resolvase, N terminal domain	NA
UHGV-2120107_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-2120107_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-2120107_1	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-2120107_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-2120107_1	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-2120107_2	PHROG	phrog_806	NA	unknown function
UHGV-2120107_2	UniRef90	UniRef90_A0A416Q1P4	BIG2 domain-containing protein	NA
UHGV-2120107_2	eggNOG-mapper	663241.C9E2L7_9CAUD	NA	NA
UHGV-2120107_2	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-2120107_2	Structural annotation	PF02368, PF11611, PF21461, MF_00791, NF003967, NF005261, COG2967	NA	NA
UHGV-2120107_3	UniRef90	UniRef90_A0A352BM31	XRE family transcriptional regulator	NA
UHGV-2120107_3	eggNOG-mapper	411470.RUMGNA_02178	Cro/C1-type HTH DNA-binding domain	NA
UHGV-2120107_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2120107_3	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-2120107_5	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-2120107_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2120107_5	UniRef90	UniRef90_A0A1C5PGS2	Predicted transcriptional regulator	NA
UHGV-2120107_5	eggNOG-mapper	411468.CLOSCI_01457	Helix-turn-helix XRE-family like proteins	NA
UHGV-2120107_5	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-2120107_5	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2120107_5	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-2120107_8	PHROG	phrog_31760	NA	unknown function
UHGV-2120107_12	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2120107_12	UniRef90	UniRef90_UPI001D0EB55A	helitron helicase-like domain-containing protein	NA
UHGV-2120107_12	eggNOG-mapper	483218.BACPEC_01173	NA	NA
UHGV-2120107_12	Structural annotation	PF21578, NF041486	NA	NA
UHGV-2120107_13	UniRef90	UniRef90_A0A1C5PHR0	Ribonuclease H	NA
UHGV-2120107_13	eggNOG-mapper	411461.DORFOR_01140	RNA-DNA hybrid ribonuclease activity	NA
UHGV-2120107_13	COG	COG0328	Ribonuclease HI	NA
UHGV-2120107_13	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-2120107_15	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-2120107_15	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-2120107_15	UniRef90	UniRef90_A0A1C5VK85	Sporulation initiation inhibitor protein soj	NA
UHGV-2120107_15	eggNOG-mapper	97139.C824_00725	Cellulose biosynthesis protein BcsQ	NA
UHGV-2120107_15	Pfam	PF13614	AAA domain	AAA_31
UHGV-2120107_15	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-2120107_15	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-2120107_16	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-2120107_16	PHROG	phrog_15077	NA	unknown function
UHGV-2120107_16	UniRef90	UniRef90_A0A1C5PHC7	ParB-like nuclease domain	NA
UHGV-2120107_16	eggNOG-mapper	1235792.C808_00610	ParB-like nuclease domain	NA
UHGV-2120107_16	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-2120107_16	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-2120107_16	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-2120107_17	PHROG	phrog_7566	NA	unknown function
UHGV-2120107_17	eggNOG-mapper	411902.CLOBOL_05695	NA	NA
UHGV-2120107_21	PHROG	phrog_10714	NA	unknown function
UHGV-2120107_24	KOfam	K04087	hflC; modulator of FtsH protease HflC	NA
UHGV-2120107_24	PHROG	phrog_200	lipoprotein	other
UHGV-2120107_24	UniRef90	UniRef90_A0A416QWZ0	Prohibitin family protein	NA
UHGV-2120107_24	eggNOG-mapper	537007.BLAHAN_05484	prohibitin homologues	NA
UHGV-2120107_24	Pfam	PF01145	SPFH domain / Band 7 family	Band_7
UHGV-2120107_24	COG	COG0330	Regulator of protease activity HflC, stomatin/prohibitin superfamily	NA
UHGV-2120107_24	Structural annotation	PF01145, MF_01562, NF008181, COG0330	NA	NA
UHGV-2120107_25	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2120107_25	UniRef90	UniRef90_UPI001D089637	NA	NA
UHGV-2120107_25	eggNOG-mapper	33035.JPJF01000139_gene3002	NA	NA
UHGV-2120107_25	Structural annotation	PF04545	NA	NA
UHGV-2120107_26	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-2120107_26	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-2120107_26	UniRef90	UniRef90_A0A1C5PI61	Terminase small subunit	NA
UHGV-2120107_26	eggNOG-mapper	1235792.C808_05330	Terminase small subunit	NA
UHGV-2120107_26	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-2120107_26	COG	COG3728	Phage terminase, small subunit	NA
UHGV-2120107_26	Structural annotation	PF03592, COG3728	NA	NA
UHGV-2120107_27	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2120107_27	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-2120107_27	UniRef90	UniRef90_A0A415L5G2	Terminase	NA
UHGV-2120107_27	eggNOG-mapper	1304866.K413DRAFT_0811	Phage terminase, large subunit, PBSX family	NA
UHGV-2120107_27	COG	COG1783	Phage terminase large subunit	NA
UHGV-2120107_27	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-2120107_28	PHROG	phrog_533	portal protein	head and packaging
UHGV-2120107_28	UniRef90	UniRef90_A0A1C5PI86	Phage portal protein, putative, A118 family	NA
UHGV-2120107_28	eggNOG-mapper	742740.HMPREF9474_03501	NA	NA
UHGV-2120107_28	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-2120107_29	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2120107_29	UniRef90	UniRef90_A0A1C5PIA8	Phage minor capsid protein 2	NA
UHGV-2120107_29	eggNOG-mapper	33035.JPJF01000093_gene2255	NA	NA
UHGV-2120107_29	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2120107_29	COG	COG5585	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	NA
UHGV-2120107_29	Structural annotation	PF06152	NA	NA
UHGV-2120107_30	Structural annotation	PF11344	NA	NA
UHGV-2120107_31	PHROG	phrog_1048	NA	unknown function
UHGV-2120107_31	UniRef90	UniRef90_A0A417PRP3	NA	NA
UHGV-2120107_31	eggNOG-mapper	457412.RSAG_01107	NA	NA
UHGV-2120107_31	Pfam	PF11195	NA	DUF2829
UHGV-2120107_31	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-2120107_31	Structural annotation	PF11195	NA	NA
UHGV-2120107_33	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-2120107_33	eggNOG-mapper	1304866.K413DRAFT_0806	NA	NA
UHGV-2120107_34	PHROG	phrog_422	major head protein	head and packaging
UHGV-2120107_34	UniRef90	UniRef90_A0A414W378	Phage capsid protein	NA
UHGV-2120107_34	eggNOG-mapper	663278.Ethha_1589	NA	NA
UHGV-2120107_34	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-2120107_35	PHROG	phrog_541	head-tail adaptor	connector
UHGV-2120107_35	eggNOG-mapper	1304866.K413DRAFT_0783	NA	NA
UHGV-2120107_36	PHROG	phrog_8710	NA	unknown function
UHGV-2120107_36	eggNOG-mapper	742740.HMPREF9474_03508	NA	NA
UHGV-2120107_36	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-2120107_37	PHROG	phrog_556	minor head protein	head and packaging
UHGV-2120107_37	eggNOG-mapper	742740.HMPREF9474_03509	NA	NA
UHGV-2120107_38	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-2120107_38	UniRef90	UniRef90_UPI001C0EB705	minor capsid protein	NA
UHGV-2120107_38	eggNOG-mapper	483218.BACPEC_01150	NA	NA
UHGV-2120107_38	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-2120107_38	Structural annotation	PF12691, COG5003	NA	NA
UHGV-2120107_39	PHROG	phrog_820	major tail protein	tail
UHGV-2120107_39	eggNOG-mapper	33035.JPJF01000093_gene2246	NA	NA
UHGV-2120107_39	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-2120107_40	PHROG	phrog_8300	NA	unknown function
UHGV-2120107_40	eggNOG-mapper	33035.JPJF01000093_gene2245	NA	NA
UHGV-2120107_40	Structural annotation	PF06854	NA	NA
UHGV-2120107_41	PHROG	phrog_8355	NA	unknown function
UHGV-2120107_41	UniRef90	UniRef90_UPI000E5D9789	Gp15 family bacteriophage protein	NA
UHGV-2120107_41	eggNOG-mapper	195103.CPF_0964	NA	NA
UHGV-2120107_42	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-2120107_42	UniRef90	UniRef90_A0A1C5PIN9	Phage-related protein	NA
UHGV-2120107_42	eggNOG-mapper	33035.JPJF01000093_gene2243	phage tail tape measure protein	NA
UHGV-2120107_42	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-2120107_42	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-2120107_43	PHROG	phrog_1194	NA	unknown function
UHGV-2120107_43	eggNOG-mapper	33035.JPJF01000093_gene2242	NA	NA
UHGV-2120107_43	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-2120107_44	PHROG	phrog_6616	tail protein	tail
UHGV-2120107_44	UniRef90	UniRef90_A0A1C5PIT8	Peptidase S74 domain-containing protein	NA
UHGV-2120107_44	eggNOG-mapper	457424.BFAG_02436	Phage minor structural protein	NA
UHGV-2120107_44	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-2120107_44	COG	COG4926	Phage-related protein	NA
UHGV-2120107_44	Structural annotation	PF05113, PF18957, PF16407, NF033848, NF011782, COG4379	NA	NA
UHGV-2120107_45	PHROG	phrog_16164	NA	unknown function
UHGV-2120107_45	eggNOG-mapper	457412.RSAG_01113	NA	NA
UHGV-2120107_45	Structural annotation	PF10651, NF032891	NA	NA
UHGV-2120107_46	eggNOG-mapper	457412.RSAG_01112	NA	NA
UHGV-2120107_47	PHROG	phrog_19280	NA	unknown function
UHGV-2120107_47	UniRef90	UniRef90_A0A413UF00	NA	NA
UHGV-2120107_47	eggNOG-mapper	1160721.RBI_I01569	NA	NA
UHGV-2120107_47	Pfam	PF19789	NA	DUF6273
UHGV-2120107_47	Structural annotation	PF19789	NA	NA
UHGV-2120107_48	Structural annotation	PF05635, MF_04067, NF008911	NA	NA
UHGV-2120107_49	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-2120107_49	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-2120107_49	UniRef90	UniRef90_A0A1C5PK20	Retron-type reverse transcriptase	NA
UHGV-2120107_49	eggNOG-mapper	1160721.RBI_I01568	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-2120107_49	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-2120107_49	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-2120107_49	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-2120107_49	Structural annotation	PF00078, MF_01390, TIGR04416, COG3344	NA	NA
UHGV-2120107_52	eggNOG-mapper	33035.JPJF01000043_gene997	NA	NA
UHGV-2120107_53	PHROG	phrog_4105	NA	unknown function
UHGV-2120107_53	eggNOG-mapper	411459.RUMOBE_00911	NA	NA
UHGV-2120107_54	PHROG	phrog_443	holin	lysis
UHGV-2120107_54	UniRef90	UniRef90_UPI000C75746C	holin	NA
UHGV-2120107_54	eggNOG-mapper	626523.GCWU000342_01012	Putative lactococcus lactis phage r1t holin	NA
UHGV-2120107_54	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-2120107_54	Structural annotation	PF16945	NA	NA
UHGV-2120107_55	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2120107_55	PHROG	phrog_3088	amidase	lysis
UHGV-2120107_55	UniRef90	UniRef90_A0A564VYB8	N-acetylmuramoyl-L-alanine amidase CwlH	NA
UHGV-2120107_55	eggNOG-mapper	411459.RUMOBE_00909	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA
UHGV-2120107_55	Pfam	PF01832	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
UHGV-2120107_55	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-2120107_55	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-2120107_55	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2120107_55	Structural annotation	PF01832, MF_04111, NF008758, TIGR02541, COG5632, COG1705	NA	NA
UHGV-2120107_56	PHROG	phrog_2104	NA	unknown function
UHGV-2120107_56	UniRef90	UniRef90_A0A1C5PJW7	Putative zinc finger/helix-turn-helix protein, YgiT family	NA
UHGV-2120107_56	eggNOG-mapper	888727.HMPREF9092_0491	Helix-turn-helix	NA
UHGV-2120107_56	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2120107_56	COG	COG2944	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	NA
UHGV-2120107_56	Structural annotation	PF01381, NF040522, COG2944	NA	NA