UHGV-2120437

Genome information

Genome length 28,536 bps

CDS count 40

Completeness 60.74% (medium-quality)

geNomad score 0.9724

Prediction confidence Confident

Genome information
Genome ID	UHGV-2120437
vOTU ID	vOTU-024056
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029523\|Ga0244821_100445\|provirus_26803_55338
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	60.74% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9724
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	34.23
Jumbo phage	No

Genome content
Genome length	28,536 bps
GC content	55.38%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	40
CDS density	94.32%
Average CDS length	677.40 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2120437_1	PHROG	phrog_4031	NA	unknown function
UHGV-2120437_1	UniRef90	UniRef90_R7EPX0	Peptidase_M78 domain-containing protein	NA
UHGV-2120437_1	eggNOG-mapper	1540257.JQMW01000004_gene447	NA	NA
UHGV-2120437_1	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-2120437_1	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-2120437_1	Structural annotation	PF06114, COG2856	NA	NA
UHGV-2120437_2	eggNOG-mapper	1347392.CCEZ01000015_gene2866	NA	NA
UHGV-2120437_3	PHROG	phrog_11138	NA	unknown function
UHGV-2120437_3	UniRef90	UniRef90_A0A7X8A0V4	Sigma70_r4_2 domain-containing protein	NA
UHGV-2120437_3	eggNOG-mapper	397288.C806_01476	NA	NA
UHGV-2120437_3	Structural annotation	PF08281, MF_00962, TIGR02479, COG1595	NA	NA
UHGV-2120437_4	PHROG	phrog_7234	NA	unknown function
UHGV-2120437_4	eggNOG-mapper	698758.AXY_13980	NA	NA
UHGV-2120437_5	PHROG	phrog_408	NA	unknown function
UHGV-2120437_5	UniRef90	UniRef90_R7EMK7	rRNA biogenesis protein rrp5 putative	NA
UHGV-2120437_5	eggNOG-mapper	431943.CKL_2664	NA	NA
UHGV-2120437_6	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-2120437_6	UniRef90	UniRef90_A0A1E3C2W9	Nuclease	NA
UHGV-2120437_6	eggNOG-mapper	997296.PB1_04170	NA	NA
UHGV-2120437_6	Pfam	PF10926	NA	DUF2800
UHGV-2120437_6	COG	COG2887	RecB family exonuclease	NA
UHGV-2120437_6	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-2120437_7	PHROG	phrog_112	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2120437_7	UniRef90	UniRef90_R7EM54	Phage-associated protein	NA
UHGV-2120437_7	eggNOG-mapper	697281.Mahau_2842	NA	NA
UHGV-2120437_7	Pfam	PF10991	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
UHGV-2120437_7	Structural annotation	PF10991, MF_04153	NA	NA
UHGV-2120437_8	eggNOG-mapper	742741.HMPREF9475_02394	NA	NA
UHGV-2120437_9	KOfam	K02334	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	NA
UHGV-2120437_9	PHROG	phrog_10285	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-2120437_9	UniRef90	UniRef90_A0A412B071	POLAc domain-containing protein	NA
UHGV-2120437_9	eggNOG-mapper	1121342.AUCO01000004_gene620	DNA polymerase	NA
UHGV-2120437_9	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-2120437_9	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-2120437_9	Structural annotation	PF00476, MF_04101, NF011540, COG0749	NA	NA
UHGV-2120437_10	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-2120437_10	UniRef90	UniRef90_A0A6N9P4V0	NA	NA
UHGV-2120437_10	eggNOG-mapper	908340.HMPREF9406_0151	NA	NA
UHGV-2120437_10	Pfam	PF14359	NA	DUF4406
UHGV-2120437_10	Structural annotation	PF14359, MF_03036, TIGR03646, COG3613	NA	NA
UHGV-2120437_11	PHROG	phrog_256	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2120437_11	UniRef90	UniRef90_R6C4F1	Virulence-associated E family protein	NA
UHGV-2120437_11	eggNOG-mapper	994573.T472_0208815	virulence-associated E family protein	NA
UHGV-2120437_11	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-2120437_11	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-2120437_11	Structural annotation	PF05272, NF011296, NF040562, COG5545	NA	NA
UHGV-2120437_13	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2120437_13	UniRef90	UniRef90_R6C739	VRR_NUC domain protein	NA
UHGV-2120437_13	eggNOG-mapper	994573.T472_0210855	VRR-NUC domain-containing protein	NA
UHGV-2120437_13	Structural annotation	PF01870, MF_00130, NF002584, COG1591	NA	NA
UHGV-2120437_14	KOfam	K20093	ERCC6L, PICH; DNA excision repair protein ERCC-6-like [EC:5.6.2.-]	NA
UHGV-2120437_14	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2120437_14	UniRef90	UniRef90_R6CEF6	Predicted phage related DNA helicase	NA
UHGV-2120437_14	eggNOG-mapper	748727.CLJU_c03440	snf2 family	NA
UHGV-2120437_14	PADLOC	DpdE_00011	DpdE	DPD
UHGV-2120437_14	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-2120437_14	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-2120437_14	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-2120437_14	Structural annotation	PF13872, PF16203, MF_01821, NF041790, COG0553	NA	NA
UHGV-2120437_15	PHROG	phrog_7024	NA	unknown function
UHGV-2120437_15	eggNOG-mapper	1408437.JNJN01000033_gene2207	NA	NA
UHGV-2120437_15	AcrCatalog	cluster_1398	NA	NA
UHGV-2120437_16	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2120437_16	UniRef90	UniRef90_A0A412AYP6	NA	NA
UHGV-2120437_16	eggNOG-mapper	755731.Clo1100_3600	NA	NA
UHGV-2120437_16	Pfam	PF07374	NA	DUF1492
UHGV-2120437_16	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-2120437_16	Structural annotation	PF07374, MF_00674, TIGR01636, COG1342	NA	NA
UHGV-2120437_17	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-2120437_17	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2120437_17	UniRef90	UniRef90_R7ELH0	HNH endonuclease domain protein	NA
UHGV-2120437_17	eggNOG-mapper	1120978.KB894083_gene917	HNH nucleases	NA
UHGV-2120437_17	Pfam	PF01844	HNH endonuclease	HNH
UHGV-2120437_17	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2120437_17	Structural annotation	PF01844, COG1403	NA	NA
UHGV-2120437_18	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-2120437_18	UniRef90	UniRef90_A0A7X5J169	Terminase	NA
UHGV-2120437_18	eggNOG-mapper	665950.HMPREF1025_02640	NA	NA
UHGV-2120437_18	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-2120437_19	PHROG	phrog_1569	NA	unknown function
UHGV-2120437_19	UniRef90	UniRef90_R6C4E0	S-AdoMet_synt_N domain-containing protein	NA
UHGV-2120437_19	eggNOG-mapper	665950.HMPREF1025_02641	S-adenosylmethionine synthetase, N-terminal domain	NA
UHGV-2120437_19	Pfam	PF00438	S-adenosylmethionine synthetase, N-terminal domain	S-AdoMet_synt_N
UHGV-2120437_19	COG	COG0192	S-adenosylmethionine synthetase	NA
UHGV-2120437_19	Structural annotation	PF01941, MF_00086, TIGR01034, COG0192	NA	NA
UHGV-2120437_20	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-2120437_20	PHROG	phrog_498	DNA methyltransferase	other
UHGV-2120437_20	UniRef90	UniRef90_R7ELG5	Methyltransferase	NA
UHGV-2120437_20	eggNOG-mapper	665950.HMPREF1025_02642	DNA methylase	NA
UHGV-2120437_20	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-2120437_20	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-2120437_20	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-2120437_20	COG	COG0863	DNA modification methylase	NA
UHGV-2120437_20	Structural annotation	PF01555, PF02195, MF_02015, MF_01872, NF010253, TIGR04285, COG0863, COG1475	NA	NA
UHGV-2120437_21	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-2120437_21	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-2120437_21	UniRef90	UniRef90_R9IRE2	PAPS_reduct domain-containing protein	NA
UHGV-2120437_21	eggNOG-mapper	397291.C804_05219	NA	NA
UHGV-2120437_21	PADLOC	SspD_00001	SspD	SSP
UHGV-2120437_21	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-2120437_21	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-2120437_21	Structural annotation	PF01507, MF_00064, NF006327, COG0175	NA	NA
UHGV-2120437_22	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-2120437_22	PHROG	phrog_116	DNA methyltransferase	other
UHGV-2120437_22	UniRef90	UniRef90_R6C729	DNA (cytosine-5-)-methyltransferase	NA
UHGV-2120437_22	eggNOG-mapper	1216932.CM240_1398	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-2120437_22	PADLOC	oMTase_00004	orphan methyltransferase	RM
UHGV-2120437_22	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-2120437_22	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-2120437_22	COG	COG0270	DNA-cytosine methylase	NA
UHGV-2120437_22	Structural annotation	TIGR00675	NA	NA
UHGV-2120437_23	PHROG	phrog_2443	amidoligase enzyme	other
UHGV-2120437_23	UniRef90	UniRef90_R6CEE8	Virulence-related protein	NA
UHGV-2120437_23	eggNOG-mapper	243164.DET0065	NA	NA
UHGV-2120437_23	AcrCatalog	cluster_14489	NA	NA
UHGV-2120437_24	PHROG	phrog_3782	NA	unknown function
UHGV-2120437_24	UniRef90	UniRef90_R7ET71	NA	NA
UHGV-2120437_24	eggNOG-mapper	665950.HMPREF1025_02645	NA	NA
UHGV-2120437_24	Pfam	PF14192	NA	DUF4314
UHGV-2120437_24	COG	COG2105	Predicted gamma-glutamylamine cyclotransferase YtfP, GGCT/AIG2-like family	NA
UHGV-2120437_24	Structural annotation	PF14192, MF_00754, NF003018	NA	NA
UHGV-2120437_25	eggNOG-mapper	1227349.C170_23725	NA	NA
UHGV-2120437_25	Pfam	PF20648	NA	DUF6809
UHGV-2120437_26	PHROG	phrog_2443	amidoligase enzyme	other
UHGV-2120437_26	UniRef90	UniRef90_R6CIH8	Putative amidoligase enzyme	NA
UHGV-2120437_26	eggNOG-mapper	1235790.C805_01781	Putative amidoligase enzyme	NA
UHGV-2120437_26	AcrCatalog	cluster_58247	NA	NA
UHGV-2120437_26	Pfam	PF12224	Putative amidoligase enzyme	Amidoligase_2
UHGV-2120437_26	Structural annotation	PF12224	NA	NA
UHGV-2120437_27	KOfam	K00682	GGCT; gamma-glutamylcyclotransferase [EC:4.3.2.9]	NA
UHGV-2120437_27	PHROG	phrog_2520	gamma-glutamyl cyclotransferase	moron, auxiliary metabolic gene and host takeover
UHGV-2120437_27	UniRef90	UniRef90_UPI00195C57CB	gamma-glutamylcyclotransferase	NA
UHGV-2120437_27	eggNOG-mapper	665950.HMPREF1025_02647	Gamma-glutamyl cyclotransferase, AIG2-like	NA
UHGV-2120437_27	Pfam	PF06094	Gamma-glutamyl cyclotransferase, AIG2-like	GGACT
UHGV-2120437_27	COG	COG2105	Predicted gamma-glutamylamine cyclotransferase YtfP, GGCT/AIG2-like family	NA
UHGV-2120437_27	Structural annotation	PF06094, COG2105	NA	NA
UHGV-2120437_28	PHROG	phrog_2945	NA	unknown function
UHGV-2120437_28	UniRef90	UniRef90_D9SLK6	(NiFe) hydrogenase maturation protein HypF	NA
UHGV-2120437_28	eggNOG-mapper	1235802.C823_05282	NA	NA
UHGV-2120437_29	PHROG	phrog_4709	NA	unknown function
UHGV-2120437_29	eggNOG-mapper	693746.OBV_41590	NA	NA
UHGV-2120437_29	AcrCatalog	cluster_3300	NA	NA
UHGV-2120437_30	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2120437_30	UniRef90	UniRef90_R6CIH0	Putative phage terminase large subunit	NA
UHGV-2120437_30	eggNOG-mapper	552396.HMPREF0863_01433	large subunit	NA
UHGV-2120437_30	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-2120437_30	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2120437_30	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2120437_30	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-2120437_31	KOfam	K07473	dinJ; DNA-damage-inducible protein J	NA
UHGV-2120437_31	PHROG	phrog_2737	NA	unknown function
UHGV-2120437_31	UniRef90	UniRef90_D3QZE9	Addiction module antitoxin, RelB/DinJ family	NA
UHGV-2120437_31	eggNOG-mapper	699246.HMPREF0868_1592	Addiction module antitoxin, RelB DinJ family	NA
UHGV-2120437_31	Pfam	PF04221	RelB antitoxin	RelB
UHGV-2120437_31	NCBIFam	TIGR02384.1	type II toxin-antitoxin system RelB/DinJ family antitoxin	NA
UHGV-2120437_31	COG	COG3077	Antitoxin component of the RelBE or YafQ-DinJ toxin-antitoxin module	NA
UHGV-2120437_31	Structural annotation	PF04221, TIGR02384, COG3077	NA	NA
UHGV-2120437_32	KOfam	K19092	parE1_3_4; toxin ParE1/3/4	NA
UHGV-2120437_32	PHROG	phrog_2455	NA	unknown function
UHGV-2120437_32	UniRef90	UniRef90_D3QZF0	Toxin-antitoxin system, toxin component, RelE family	NA
UHGV-2120437_32	eggNOG-mapper	699246.HMPREF0868_1593	ParE toxin of type II toxin-antitoxin system, parDE	NA
UHGV-2120437_32	Pfam	PF05016	ParE toxin of type II toxin-antitoxin system, parDE	ParE_toxin
UHGV-2120437_32	NCBIFam	TIGR02385.1	type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family	NA
UHGV-2120437_32	COG	COG3668	Plasmid stabilization system protein ParE	NA
UHGV-2120437_32	Structural annotation	PF05016, TIGR00053, COG3668	NA	NA
UHGV-2120437_33	PHROG	phrog_12	portal protein	head and packaging
UHGV-2120437_33	UniRef90	UniRef90_A0A1E3BX67	Phage portal protein	NA
UHGV-2120437_33	eggNOG-mapper	665950.HMPREF1025_02651	Phage portal protein	NA
UHGV-2120437_33	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2120437_33	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-2120437_33	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2120437_33	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-2120437_34	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-2120437_34	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-2120437_34	UniRef90	UniRef90_A0A1Y4MX54	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-2120437_34	eggNOG-mapper	509191.AEDB02000020_gene3259	Belongs to the peptidase S14 family	NA
UHGV-2120437_34	Pfam	PF00574	Clp protease	CLP_protease
UHGV-2120437_34	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-2120437_34	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-2120437_35	PHROG	phrog_10	major head protein	head and packaging
UHGV-2120437_35	UniRef90	UniRef90_A0A1Y4MX40	Phage major capsid protein	NA
UHGV-2120437_35	eggNOG-mapper	1235802.C823_01519	Phage capsid family	NA
UHGV-2120437_35	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2120437_35	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2120437_35	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2120437_35	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2120437_36	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-2120437_36	UniRef90	UniRef90_A0A3D2HUK1	Phage gp6-like head-tail connector protein	NA
UHGV-2120437_36	eggNOG-mapper	665950.HMPREF1025_02654	NA	NA
UHGV-2120437_36	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-2120437_36	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-2120437_36	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-2120437_37	PHROG	phrog_25	head closure Hc1	connector
UHGV-2120437_37	UniRef90	UniRef90_R6C714	Phage head-tail adaptor putative	NA
UHGV-2120437_37	eggNOG-mapper	1120978.KB894083_gene903	Phage head-tail joining protein	NA
UHGV-2120437_37	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-2120437_37	COG	COG5614	Phage head-tail adaptor	NA
UHGV-2120437_37	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-2120437_38	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2120437_38	UniRef90	UniRef90_A0A412AY96	HK97 gp10 family phage protein	NA
UHGV-2120437_38	eggNOG-mapper	1120978.KB894083_gene902	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-2120437_38	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-2120437_38	Structural annotation	TIGR01725	NA	NA
UHGV-2120437_39	PHROG	phrog_78	tail terminator	connector
UHGV-2120437_39	eggNOG-mapper	1347392.CCEZ01000015_gene2833	High confidence in function and specificity	NA
UHGV-2120437_39	Structural annotation	PF05657, NF040576, COG3167	NA	NA
UHGV-2120437_40	UniRef90	UniRef90_A0A3D1VJ50	Phage tail protein (Fragment)	NA
UHGV-2120437_40	eggNOG-mapper	1089553.Tph_c23090	phage major tail protein, phi13 family	NA