UHGV-2120969

Genome information

vOTU vOTU-041977

Genome length 23,025 bps

CDS count 41

Completeness 55.03% (medium-quality)

geNomad score 0.9827

Prediction confidence Confident

Genome information
Genome ID	UHGV-2120969
vOTU ID	vOTU-041977
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029579\|Ga0244893_101233
BioSample	SAMEA3708737
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	55.03% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9827
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.67
Jumbo phage	No

Genome content
Genome length	23,025 bps
GC content	54.19%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	41
CDS density	89.99%
Average CDS length	511.54 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2120969_1	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2120969_1	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2120969_1	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-2120969_2	PHROG	phrog_15946	NA	unknown function
UHGV-2120969_2	eggNOG-mapper	1041147.AUFB01000014_gene330	NA	NA
UHGV-2120969_4	UniRef90	UniRef90_A0A8D9PDM8	Pyocin activator protein	NA
UHGV-2120969_4	Structural annotation	PF11112, COG3311	NA	NA
UHGV-2120969_5	PHROG	phrog_22529	NA	unknown function
UHGV-2120969_5	UniRef90	UniRef90_A0A352RPR8	3D domain-containing protein	NA
UHGV-2120969_5	eggNOG-mapper	1298920.KI911353_gene568	3D domain	NA
UHGV-2120969_5	Pfam	PF06725	3D domain	3D
UHGV-2120969_5	COG	COG3584	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	NA
UHGV-2120969_5	Structural annotation	PF06725, MF_02071, NF040670, COG3584	NA	NA
UHGV-2120969_7	PHROG	phrog_674	NA	unknown function
UHGV-2120969_7	UniRef90	UniRef90_A0A374N9T8	NA	NA
UHGV-2120969_7	eggNOG-mapper	665956.HMPREF1032_03103	NA	NA
UHGV-2120969_7	Pfam	PF07083	NA	DUF1351
UHGV-2120969_7	Structural annotation	PF07083	NA	NA
UHGV-2120969_8	PHROG	phrog_3657	NA	unknown function
UHGV-2120969_8	UniRef90	UniRef90_UPI001DC4E782	PD-(D/E)XK nuclease-like domain-containing protein	NA
UHGV-2120969_8	eggNOG-mapper	411461.DORFOR_00020	NA	NA
UHGV-2120969_9	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-2120969_9	UniRef90	UniRef90_G9YN42	Metallo-beta-lactamase domain protein	NA
UHGV-2120969_9	eggNOG-mapper	665956.HMPREF1032_03101	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-2120969_9	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-2120969_9	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-2120969_9	Structural annotation	PF12706, MF_01818, TIGR03307, COG1234	NA	NA
UHGV-2120969_10	PHROG	phrog_9474	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2120969_10	eggNOG-mapper	1203606.HMPREF1526_01881	HNH endonuclease	NA
UHGV-2120969_10	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2120969_10	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-2120969_11	Structural annotation	PF11417	NA	NA
UHGV-2120969_12	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2120969_12	UniRef90	UniRef90_UPI001C0170D2	NA	NA
UHGV-2120969_12	eggNOG-mapper	1226322.HMPREF1545_00295	NA	NA
UHGV-2120969_12	Pfam	PF06356	NA	DUF1064
UHGV-2120969_12	Structural annotation	PF06356	NA	NA
UHGV-2120969_14	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-2120969_14	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2120969_14	UniRef90	UniRef90_A0A7X6YBU5	Helix-turn-helix transcriptional regulator	NA
UHGV-2120969_14	eggNOG-mapper	264732.Moth_1827	transcriptional regulator, XRE family	NA
UHGV-2120969_14	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-2120969_14	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2120969_14	Structural annotation	PF01381, PF13744, NF041951, COG3655, COG2944	NA	NA
UHGV-2120969_15	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2120969_15	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-2120969_15	Structural annotation	PF01381, MF_00535, NF041951, COG1396	NA	NA
UHGV-2120969_16	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-2120969_16	PHROG	phrog_23224	DNA methyltransferase	other
UHGV-2120969_16	UniRef90	UniRef90_D4K450	Methyltransferase	NA
UHGV-2120969_16	eggNOG-mapper	718252.FP2_06750	DNA methylase	NA
UHGV-2120969_16	PADLOC	MTase_II_00172	Type II methyltransferase	RM
UHGV-2120969_16	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-2120969_16	COG	COG0863	DNA modification methylase	NA
UHGV-2120969_16	Structural annotation	PF01555, NF010253, COG0863	NA	NA
UHGV-2120969_17	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2120969_17	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-2120969_17	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-2120969_18	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-2120969_18	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-2120969_18	UniRef90	UniRef90_UPI001D097961	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-2120969_18	eggNOG-mapper	1345695.CLSA_c30150	NA	NA
UHGV-2120969_18	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-2120969_18	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-2120969_18	Structural annotation	PF01507, MF_00063, NF006327, COG0175	NA	NA
UHGV-2120969_19	PHROG	phrog_2045	NA	unknown function
UHGV-2120969_19	UniRef90	UniRef90_UPI001379F32C	NA	NA
UHGV-2120969_19	eggNOG-mapper	1235790.C805_00077	NA	NA
UHGV-2120969_19	Pfam	PF07505	NA	DUF5131
UHGV-2120969_19	COG	COG4422	NA	NA
UHGV-2120969_19	Structural annotation	PF07505, TIGR04471, COG4422	NA	NA
UHGV-2120969_24	eggNOG-mapper	445972.ANACOL_00168	NA	NA
UHGV-2120969_26	PHROG	phrog_236	nucleotide kinase	other
UHGV-2120969_26	UniRef90	UniRef90_UPI001CA83796	NA	NA
UHGV-2120969_26	eggNOG-mapper	1033743.CAES01000020_gene3148	NA	NA
UHGV-2120969_26	Pfam	PF11753	NA	DUF3310
UHGV-2120969_27	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2120969_27	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2120969_27	UniRef90	UniRef90_A0A8D9PDC4	Repressor protein	NA
UHGV-2120969_27	eggNOG-mapper	1226322.HMPREF1545_00039	sequence-specific DNA binding	NA
UHGV-2120969_27	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2120969_27	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2120969_27	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-2120969_28	UniRef90	UniRef90_UPI0009523D83	helix-turn-helix domain containing protein	NA
UHGV-2120969_28	eggNOG-mapper	1226322.HMPREF1545_00042	NA	NA
UHGV-2120969_28	Structural annotation	PF13542	NA	NA
UHGV-2120969_29	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2120969_29	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-2120969_29	UniRef90	UniRef90_A0A3D3Y0N9	PBSX family phage terminase large subunit	NA
UHGV-2120969_29	eggNOG-mapper	1226322.HMPREF1545_00043	Phage terminase large subunit	NA
UHGV-2120969_29	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-2120969_29	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-2120969_29	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2120969_29	COG	COG1783	Phage terminase large subunit	NA
UHGV-2120969_29	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-2120969_30	PHROG	phrog_533	portal protein	head and packaging
UHGV-2120969_30	UniRef90	UniRef90_A0A1C5N775	Phage portal protein, putative, A118 family	NA
UHGV-2120969_30	eggNOG-mapper	1226322.HMPREF1545_00044	NA	NA
UHGV-2120969_30	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2120969_30	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-2120969_32	PHROG	phrog_8680	NA	unknown function
UHGV-2120969_32	UniRef90	UniRef90_A0A3R6D7I3	NA	NA
UHGV-2120969_32	eggNOG-mapper	411470.RUMGNA_02208	NA	NA
UHGV-2120969_32	Pfam	PF14386	NA	DUF4417
UHGV-2120969_32	Structural annotation	PF14386	NA	NA
UHGV-2120969_33	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2120969_33	UniRef90	UniRef90_A0A1C5N7V1	Phage minor capsid protein 2	NA
UHGV-2120969_33	eggNOG-mapper	1226322.HMPREF1545_00046	Phage minor capsid protein 2	NA
UHGV-2120969_33	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2120969_33	COG	COG2369	NA	NA
UHGV-2120969_33	Structural annotation	PF06152	NA	NA
UHGV-2120969_35	UniRef90	UniRef90_A0A6B9SU02	Fibronectin autolysin	NA
UHGV-2120969_35	Structural annotation	PF06810	NA	NA
UHGV-2120969_36	PHROG	phrog_544	major head protein	head and packaging
UHGV-2120969_36	UniRef90	UniRef90_A0A810PZM2	S-l_SbsC_C domain-containing protein	NA
UHGV-2120969_36	eggNOG-mapper	1347392.CCEZ01000005_gene1236	NA	NA
UHGV-2120969_36	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-2120969_36	Structural annotation	PF03864, PF18316, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-2120969_37	PHROG	phrog_541	head-tail adaptor	connector
UHGV-2120969_37	eggNOG-mapper	642492.Clole_0822	NA	NA
UHGV-2120969_38	PHROG	phrog_3366	NA	unknown function
UHGV-2120969_38	eggNOG-mapper	1226322.HMPREF1545_00053	NA	NA
UHGV-2120969_38	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-2120969_39	PHROG	phrog_556	minor head protein	head and packaging
UHGV-2120969_39	UniRef90	UniRef90_UPI00195E1497	minor capsid protein	NA
UHGV-2120969_39	eggNOG-mapper	1226322.HMPREF1545_00054	Minor capsid protein	NA
UHGV-2120969_39	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-2120969_39	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-2120969_40	PHROG	phrog_3266	tail completion	connector
UHGV-2120969_40	eggNOG-mapper	1232443.BAIA02000078_gene24	NA	NA
UHGV-2120969_40	Structural annotation	PF12691	NA	NA
UHGV-2120969_41	eggNOG-mapper	1232443.BAIA02000078_gene23	NA	NA