UHGV-2121790

Genome information

Genome length 35,646 bps

CDS count 44

Completeness 92.74% (high-quality)

geNomad score 0.9705

Prediction confidence Confident

Genome information
Genome ID	UHGV-2121790
vOTU ID	vOTU-063643
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029718\|Ga0245237_1000029\|provirus_3_35648
BioSample	SAMEA3449289
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	92.74% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9705
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	61.29
Jumbo phage	No

Genome content
Genome length	35,646 bps
GC content	49.00%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	44
CDS density	93.14%
Average CDS length	757.50 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2121790_1	Structural annotation	PF13385	NA	NA
UHGV-2121790_2	Structural annotation	PF10651, NF009453	NA	NA
UHGV-2121790_4	PHROG	phrog_6616	tail protein	tail
UHGV-2121790_4	UniRef90	UniRef90_A0A0J1FXD9	Peptidase S74 domain-containing protein	NA
UHGV-2121790_4	eggNOG-mapper	1294142.CINTURNW_1042	Phage minor structural protein	NA
UHGV-2121790_4	COG	COG4926	Phage-related protein	NA
UHGV-2121790_4	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-2121790_5	PHROG	phrog_1194	NA	unknown function
UHGV-2121790_5	UniRef90	UniRef90_A0A0R1Q5P9	NA	NA
UHGV-2121790_5	eggNOG-mapper	1400520.LFAB_05290	NA	NA
UHGV-2121790_5	Pfam	PF20458	NA	DUF6711
UHGV-2121790_5	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-2121790_7	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-2121790_7	eggNOG-mapper	645991.Sgly_0352	SLT domain	NA
UHGV-2121790_7	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-2121790_8	UniRef90	UniRef90_UPI0012BCDD8A	NA	NA
UHGV-2121790_8	eggNOG-mapper	1211844.CBLM010000016_gene1484	NA	NA
UHGV-2121790_8	Structural annotation	PF19591	NA	NA
UHGV-2121790_9	PHROG	phrog_158	major tail protein	tail
UHGV-2121790_9	UniRef90	UniRef90_R6HYI8	Major tail protein putative	NA
UHGV-2121790_9	eggNOG-mapper	1209989.TepiRe1_1157	Phage tail tube protein, TTP	NA
UHGV-2121790_9	Pfam	PF16461	Lambda phage tail tube protein, TTP	Phage_TTP_12
UHGV-2121790_9	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-2121790_10	Structural annotation	PF05657	NA	NA
UHGV-2121790_11	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2121790_11	UniRef90	UniRef90_R6IVT6	Bacteriophage protein PF04883 family	NA
UHGV-2121790_11	eggNOG-mapper	1280692.AUJL01000025_gene2076	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-2121790_11	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-2121790_11	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-2121790_11	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-2121790_12	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-2121790_13	PHROG	phrog_132	head-tail adaptor	connector
UHGV-2121790_13	UniRef90	UniRef90_R6I6I7	NA	NA
UHGV-2121790_13	eggNOG-mapper	268407.PWYN_03015	NA	NA
UHGV-2121790_14	PHROG	phrog_283	major head protein	head and packaging
UHGV-2121790_14	UniRef90	UniRef90_UPI001896DBE2	P22 coat protein	NA
UHGV-2121790_14	eggNOG-mapper	1297617.JPJD01000059_gene2633	P22 coat protein - gene protein 5	NA
UHGV-2121790_14	Pfam	PF11651	P22 coat protein - gene protein 5	P22_CoatProtein
UHGV-2121790_14	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-2121790_15	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-2121790_15	UniRef90	UniRef90_UPI001651708C	phage scaffolding protein	NA
UHGV-2121790_15	eggNOG-mapper	1196028.ALEF01000043_gene465	Phage minor structural protein GP20	NA
UHGV-2121790_15	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-2121790_17	PHROG	phrog_115	minor head protein	head and packaging
UHGV-2121790_17	UniRef90	UniRef90_A0A3D2QEP6	Phage_Mu_F domain-containing protein	NA
UHGV-2121790_17	eggNOG-mapper	1209989.TepiRe1_1146	Phage Mu protein F like protein	NA
UHGV-2121790_17	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-2121790_17	Pfam	PF14424	The BURPS668_1122 family of deaminases	Toxin-deaminase
UHGV-2121790_17	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-2121790_17	COG	COG2369	NA	NA
UHGV-2121790_18	PHROG	phrog_64	portal protein	head and packaging
UHGV-2121790_18	UniRef90	UniRef90_R6IBR5	Phage portal protein	NA
UHGV-2121790_18	eggNOG-mapper	97138.C820_00238	Phage portal protein, SPP1 Gp6-like	NA
UHGV-2121790_18	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2121790_18	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-2121790_19	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2121790_19	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-2121790_19	UniRef90	UniRef90_R6I0M1	Phage terminase large subunit PBSX family	NA
UHGV-2121790_19	eggNOG-mapper	203119.Cthe_2474	Phage terminase, large subunit, PBSX family	NA
UHGV-2121790_19	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-2121790_19	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-2121790_19	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2121790_19	COG	COG1783	Phage terminase large subunit	NA
UHGV-2121790_19	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-2121790_20	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-2121790_20	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-2121790_20	UniRef90	UniRef90_A0A374UNI2	Terminase small subunit	NA
UHGV-2121790_20	eggNOG-mapper	608534.GCWU000341_02298	Terminase small subunit	NA
UHGV-2121790_20	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-2121790_20	COG	COG3728	Phage terminase, small subunit	NA
UHGV-2121790_20	Structural annotation	PF03592, COG3728	NA	NA
UHGV-2121790_21	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2121790_21	UniRef90	UniRef90_UPI001D05F87A	RNA polymerase subunit sigma-24	NA
UHGV-2121790_21	eggNOG-mapper	1235835.C814_01174	NA	NA
UHGV-2121790_21	Structural annotation	PF04545	NA	NA
UHGV-2121790_22	Pfam	PF09643	YopX protein	YopX
UHGV-2121790_24	Structural annotation	NF001606	NA	NA
UHGV-2121790_25	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-2121790_25	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2121790_25	UniRef90	UniRef90_R6HY68	Endodeoxyribonuclease RusA	NA
UHGV-2121790_25	eggNOG-mapper	394503.Ccel_3302	endodeoxyribonuclease RusA	NA
UHGV-2121790_25	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-2121790_25	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-2121790_25	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-2121790_26	PHROG	phrog_16687	NA	unknown function
UHGV-2121790_26	eggNOG-mapper	1123511.KB905868_gene197	NA	NA
UHGV-2121790_27	KOfam	K07505	repA; regulatory protein RepA	NA
UHGV-2121790_27	PHROG	phrog_2597	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-2121790_27	UniRef90	UniRef90_A0A1C6CSE0	Regulatory protein repA	NA
UHGV-2121790_27	eggNOG-mapper	552396.HMPREF0863_02435	Primase C terminal 2 (PriCT-2)	NA
UHGV-2121790_27	Pfam	PF08707	Primase C terminal 2 (PriCT-2)	PriCT_2
UHGV-2121790_27	Pfam	PF13481	AAA domain	AAA_25
UHGV-2121790_27	COG	COG3598	RecA-family ATPase	NA
UHGV-2121790_27	Structural annotation	PF13481, PF16793, PF08220, MF_00350, MF_00700, NF006606, NF001641, COG3598, COG3285	NA	NA
UHGV-2121790_28	KOfam	K17677	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	NA
UHGV-2121790_28	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2121790_28	UniRef90	UniRef90_R6I0L6	Type III restriction protein res subunit	NA
UHGV-2121790_28	eggNOG-mapper	394503.Ccel_3307	helicase	NA
UHGV-2121790_28	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-2121790_28	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-2121790_28	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-2121790_28	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-2121790_28	Structural annotation	PF04851, PF16203, MF_01489, NF008521, COG1061	NA	NA
UHGV-2121790_29	PHROG	phrog_2698	NA	unknown function
UHGV-2121790_29	UniRef90	UniRef90_A0A417IL23	NA	NA
UHGV-2121790_29	eggNOG-mapper	1123511.KB905868_gene200	NA	NA
UHGV-2121790_29	Structural annotation	PF05037	NA	NA
UHGV-2121790_30	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2121790_30	UniRef90	UniRef90_UPI001411FE86	ATP-binding protein	NA
UHGV-2121790_30	eggNOG-mapper	394503.Ccel_3309	AAA domain	NA
UHGV-2121790_30	Pfam	PF13479	AAA domain	AAA_24
UHGV-2121790_30	Structural annotation	PF13479, MF_00268, TIGR01618, COG0468	NA	NA
UHGV-2121790_31	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-2121790_31	PHROG	phrog_1499	NA	unknown function
UHGV-2121790_31	UniRef90	UniRef90_R6IXY5	AAA_15 domain-containing protein	NA
UHGV-2121790_31	eggNOG-mapper	478749.BRYFOR_07583	domain protein	NA
UHGV-2121790_31	PADLOC	AAA_15	NA	NA
UHGV-2121790_31	Pfam	PF13476	AAA domain	AAA_23
UHGV-2121790_31	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-2121790_31	Structural annotation	PF11398, MF_00365, TIGR00634, COG0497	NA	NA
UHGV-2121790_32	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-2121790_32	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2121790_32	UniRef90	UniRef90_R6HY73	HTH cro/C1-type domain-containing protein	NA
UHGV-2121790_32	eggNOG-mapper	457412.RSAG_04663	sequence-specific DNA binding	NA
UHGV-2121790_32	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2121790_32	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2121790_32	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-2121790_34	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-2121790_34	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-2121790_34	UniRef90	UniRef90_UPI001D091C0C	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-2121790_34	eggNOG-mapper	1291050.JAGE01000002_gene3264	sulfate reduction	NA
UHGV-2121790_34	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-2121790_34	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-2121790_34	Structural annotation	PF01507, MF_00064, NF010367, COG0175	NA	NA
UHGV-2121790_35	KOfam	K01449	cwlJ, sleB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2121790_35	PHROG	phrog_18750	NA	unknown function
UHGV-2121790_35	UniRef90	UniRef90_A0A3D5TM41	Hydrolase_2 domain-containing protein	NA
UHGV-2121790_35	eggNOG-mapper	445972.ANACOL_03333	Cell wall hydrolase	NA
UHGV-2121790_35	Pfam	PF07486	Cell Wall Hydrolase	Hydrolase_2
UHGV-2121790_35	COG	COG3773	Cell wall hydrolase CwlJ, involved in spore germination	NA
UHGV-2121790_35	Structural annotation	PF07486, TIGR02869, COG3773	NA	NA
UHGV-2121790_37	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-2121790_37	UniRef90	UniRef90_A0A3M1PVL4	XRE family transcriptional regulator (Fragment)	NA
UHGV-2121790_37	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2121790_37	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2121790_37	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-2121790_40	PHROG	phrog_4583	transcriptional repressor	transcription regulation
UHGV-2121790_40	UniRef90	UniRef90_A0A374UNQ5	XRE family transcriptional regulator	NA
UHGV-2121790_40	eggNOG-mapper	1211817.CCAT010000053_gene2103	Helix-turn-helix	NA
UHGV-2121790_40	Pfam	PF05339	NA	DUF739
UHGV-2121790_40	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-2121790_41	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-2121790_41	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-2121790_41	UniRef90	UniRef90_R6MAH2	LexA repressor	NA
UHGV-2121790_41	eggNOG-mapper	641112.ACOK01000103_gene520	DNA-binding helix-turn-helix protein	NA
UHGV-2121790_41	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2121790_41	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-2121790_41	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-2121790_41	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-2121790_42	PHROG	phrog_5783	NA	unknown function
UHGV-2121790_42	UniRef90	UniRef90_R5XZX4	NYN domain-containing protein	NA
UHGV-2121790_42	eggNOG-mapper	1219581.HMPREF1628_01875	NYN domain	NA
UHGV-2121790_42	Pfam	PF01936	NYN domain	NYN
UHGV-2121790_42	COG	COG1432	NYN domain, predicted PIN-related RNAse, tRNA/rRNA maturation	NA
UHGV-2121790_42	Structural annotation	PF01936, TIGR00288, COG1432	NA	NA
UHGV-2121790_43	KOfam	K14059	int; integrase	NA
UHGV-2121790_43	PHROG	phrog_1	integrase	integration and excision
UHGV-2121790_43	UniRef90	UniRef90_UPI0005AA7FA8	site-specific integrase	NA
UHGV-2121790_43	eggNOG-mapper	1378168.N510_03298	Belongs to the 'phage' integrase family	NA
UHGV-2121790_43	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2121790_43	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-2121790_43	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-2121790_44	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-2121790_44	PHROG	phrog_1	integrase	integration and excision
UHGV-2121790_44	UniRef90	UniRef90_A0A3D1HZV1	Tyr recombinase domain-containing protein	NA
UHGV-2121790_44	eggNOG-mapper	350688.Clos_1827	Belongs to the 'phage' integrase family	NA
UHGV-2121790_44	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2121790_44	COG	COG4974	Site-specific recombinase XerD	NA