UHGV-2122512

Genome information

Genome length 39,815 bps

CDS count 63

Completeness 99.90% (high-quality)

geNomad score 0.9731

Prediction confidence Confident

Genome information
Genome ID	UHGV-2122512
vOTU ID	vOTU-014578
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029709\|Ga0245177_100029\|provirus_51707_93800
BioSample	SAMEA3449229
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9731
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	48.54
Jumbo phage	No

Genome content
Genome length	39,815 bps
GC content	44.46%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	63
CDS density	95.19%
Average CDS length	605.95 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2122512_5	UniRef90	UniRef90_A0A373VSJ4	Prok-JAB domain-containing protein	NA
UHGV-2122512_5	eggNOG-mapper	344747.PM8797T_16750	proteolysis	NA
UHGV-2122512_5	COG	COG1179	tRNA A37 threonylcarbamoyladenosine dehydratase	NA
UHGV-2122512_7	eggNOG-mapper	1463887.KL589980_gene5841	NA	NA
UHGV-2122512_8	UniRef90	UniRef90_R6RKJ1	LPD3 domain-containing protein	NA
UHGV-2122512_9	UniRef90	UniRef90_D4MLA0	PBECR5 domain-containing protein	NA
UHGV-2122512_9	eggNOG-mapper	1410650.JHWL01000003_gene2814	NA	NA
UHGV-2122512_9	Pfam	PF18814	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease5	PBECR5
UHGV-2122512_10	PHROG	phrog_2841	minor head protein	head and packaging
UHGV-2122512_10	UniRef90	UniRef90_A0A2V2CZS1	Phage_Mu_F domain-containing protein	NA
UHGV-2122512_10	eggNOG-mapper	1294142.CINTURNW_1685	Phage Mu protein F like protein	NA
UHGV-2122512_10	COG	COG2369	NA	NA
UHGV-2122512_13	PHROG	phrog_585	NA	unknown function
UHGV-2122512_13	UniRef90	UniRef90_A0A2T0DZJ3	NA	NA
UHGV-2122512_13	eggNOG-mapper	1220551.SCHR_00805	NA	NA
UHGV-2122512_13	Pfam	PF10711	NA	DUF2513
UHGV-2122512_13	Structural annotation	PF10711, TIGR04176, COG1695	NA	NA
UHGV-2122512_15	KOfam	K14059	int; integrase	NA
UHGV-2122512_15	PHROG	phrog_1	integrase	integration and excision
UHGV-2122512_15	UniRef90	UniRef90_B0ML01	Site-specific recombinase, phage integrase family	NA
UHGV-2122512_15	eggNOG-mapper	641112.ACOK01000073_gene2860	Phage integrase family	NA
UHGV-2122512_15	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2122512_15	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2122512_15	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-2122512_16	eggNOG-mapper	755731.Clo1100_1139	NA	NA
UHGV-2122512_17	KOfam	K02342	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	NA
UHGV-2122512_17	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-2122512_17	UniRef90	UniRef90_D4JVL7	Exonuclease, DNA polymerase III, epsilon subunit family	NA
UHGV-2122512_17	eggNOG-mapper	877424.ATWC01000001_gene2107	EXOIII	NA
UHGV-2122512_17	PADLOC	cd06127	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
UHGV-2122512_17	Pfam	PF00929	Exonuclease	RNase_T
UHGV-2122512_17	Pfam	PF00533	BRCA1 C Terminus (BRCT) domain	BRCT
UHGV-2122512_17	NCBIFam	TIGR00573.1	exonuclease, DNA polymerase III, epsilon subunit family	NA
UHGV-2122512_17	COG	COG0272	NAD-dependent DNA ligase	NA
UHGV-2122512_17	Structural annotation	PF00929, PF00533, MF_00157, NF005289, COG0847, COG5275	NA	NA
UHGV-2122512_19	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2122512_19	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2122512_19	UniRef90	UniRef90_A0A3B8P2Z5	Transcriptional regulator	NA
UHGV-2122512_19	eggNOG-mapper	1121335.Clst_0369	helix-turn-helix	NA
UHGV-2122512_19	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2122512_19	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2122512_20	UniRef90	UniRef90_A0A2N6UIC0	NA	NA
UHGV-2122512_20	eggNOG-mapper	445974.CLORAM_02965	NA	NA
UHGV-2122512_20	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-2122512_22	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-2122512_22	COG	COG2452	Predicted site-specific integrase-resolvase	NA
UHGV-2122512_22	Structural annotation	PF12728, NF040990, COG3311	NA	NA
UHGV-2122512_25	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-2122512_25	PHROG	phrog_13621	NA	unknown function
UHGV-2122512_25	eggNOG-mapper	1121334.KB911073_gene1852	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-2122512_25	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-2122512_25	COG	COG0270	DNA-cytosine methylase	NA
UHGV-2122512_27	PHROG	phrog_21613	NA	unknown function
UHGV-2122512_27	eggNOG-mapper	1120998.AUFC01000030_gene2214	NA	NA
UHGV-2122512_28	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-2122512_28	PHROG	phrog_1499	NA	unknown function
UHGV-2122512_28	UniRef90	UniRef90_A0A1C6FNE5	Chromosome segregation protein	NA
UHGV-2122512_28	eggNOG-mapper	1120998.AUFC01000030_gene2215	DNA recombination	NA
UHGV-2122512_28	Pfam	PF13476	AAA domain	AAA_23
UHGV-2122512_28	COG	COG0497	DNA repair ATPase RecN	NA
UHGV-2122512_28	Structural annotation	PF11398, MF_00365, NF008121, COG0497	NA	NA
UHGV-2122512_29	PHROG	phrog_1227	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-2122512_29	UniRef90	UniRef90_A0A352DNR3	NA	NA
UHGV-2122512_29	eggNOG-mapper	1120998.AUFC01000030_gene2216	NA	NA
UHGV-2122512_29	Pfam	PF12684	NA	DUF3799
UHGV-2122512_29	COG	COG1074	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-2122512_29	Structural annotation	PF12684, TIGR01896, COG4343	NA	NA
UHGV-2122512_30	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-2122512_30	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2122512_30	UniRef90	UniRef90_A0A174Z7R4	Single-stranded DNA-binding protein	NA
UHGV-2122512_30	eggNOG-mapper	445972.ANACOL_04434	Single-stranded DNA-binding protein	NA
UHGV-2122512_30	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-2122512_30	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-2122512_30	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2122512_30	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-2122512_30	Structural annotation	PF00436, MF_00984, NF005242, COG0629	NA	NA
UHGV-2122512_31	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-2122512_31	UniRef90	UniRef90_A0A1C6FPW9	Superfamily II helicase and inactivated derivatives	NA
UHGV-2122512_31	eggNOG-mapper	742738.HMPREF9460_02495	NA	NA
UHGV-2122512_31	Pfam	PF06048	NA	DUF927
UHGV-2122512_31	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-2122512_31	COG	COG5519	NA	NA
UHGV-2122512_31	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-2122512_33	KOfam	K19789	radD; DNA repair protein RadD	NA
UHGV-2122512_33	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2122512_33	UniRef90	UniRef90_A0A6N8HZM3	Putative DNA repair helicase RadD	NA
UHGV-2122512_33	eggNOG-mapper	1410670.JHXF01000015_gene2270	helicase	NA
UHGV-2122512_33	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-2122512_33	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-2122512_33	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-2122512_33	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-2122512_33	Structural annotation	PF04851, PF00271, MF_01489, TIGR04095, COG1061	NA	NA
UHGV-2122512_34	PHROG	phrog_5702	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2122512_34	UniRef90	UniRef90_A0A150BAU8	VRR-NUC domain-containing protein	NA
UHGV-2122512_34	eggNOG-mapper	1347392.CCEZ01000005_gene1219	VRR_NUC	NA
UHGV-2122512_34	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-2122512_34	Structural annotation	PF01870, MF_00130, NF002581, COG1591	NA	NA
UHGV-2122512_37	PHROG	phrog_6721	NA	unknown function
UHGV-2122512_37	eggNOG-mapper	478749.BRYFOR_08540	NA	NA
UHGV-2122512_37	Structural annotation	PF02511, MF_01408, TIGR02170, COG1351	NA	NA
UHGV-2122512_38	PHROG	phrog_236	nucleotide kinase	other
UHGV-2122512_38	UniRef90	UniRef90_A0A5M8SIX7	NA	NA
UHGV-2122512_38	eggNOG-mapper	546273.VEIDISOL_00707	NA	NA
UHGV-2122512_38	Pfam	PF11753	NA	DUF3310
UHGV-2122512_41	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2122512_41	UniRef90	UniRef90_A0A7I8D1K2	Sigma70_r4 domain-containing protein	NA
UHGV-2122512_41	eggNOG-mapper	1392487.JIAD01000001_gene536	sigma factor activity	NA
UHGV-2122512_41	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-2122512_41	Structural annotation	PF04545, MF_00674, NF009180, COG1342	NA	NA
UHGV-2122512_42	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-2122512_42	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2122512_42	UniRef90	UniRef90_B0MKX5	HNHc domain-containing protein	NA
UHGV-2122512_42	eggNOG-mapper	1414720.CBYM010000002_gene577	HNH nucleases	NA
UHGV-2122512_42	Pfam	PF01844	HNH endonuclease	HNH
UHGV-2122512_43	UniRef90	UniRef90_UPI001898F58A	P27 family phage terminase small subunit	NA
UHGV-2122512_43	eggNOG-mapper	1414720.CBYM010000002_gene576	NA	NA
UHGV-2122512_43	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-2122512_44	PHROG	phrog_12	portal protein	head and packaging
UHGV-2122512_44	UniRef90	UniRef90_D4JVJ5	Phage portal protein, HK97 family	NA
UHGV-2122512_44	eggNOG-mapper	397288.C806_00075	Portal protein	NA
UHGV-2122512_44	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2122512_44	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-2122512_44	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2122512_44	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-2122512_46	KOfam	K06904	NA	NA
UHGV-2122512_46	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-2122512_46	UniRef90	UniRef90_D4JVJ3	Phage head maturation protease	NA
UHGV-2122512_46	eggNOG-mapper	1196031.ALEG01000039_gene1815	Phage prohead protease, HK97 family	NA
UHGV-2122512_46	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-2122512_46	COG	COG3740	Phage head maturation protease	NA
UHGV-2122512_46	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-2122512_47	PHROG	phrog_10	major head protein	head and packaging
UHGV-2122512_47	UniRef90	UniRef90_D4JVJ2	Phage major capsid protein, HK97 family	NA
UHGV-2122512_47	eggNOG-mapper	1304866.K413DRAFT_1225	phage major capsid protein, HK97 family	NA
UHGV-2122512_47	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2122512_47	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2122512_47	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2122512_47	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2122512_48	PHROG	phrog_6865	NA	unknown function
UHGV-2122512_48	Structural annotation	PF01281	NA	NA
UHGV-2122512_49	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-2122512_49	UniRef90	UniRef90_A0A352DNU5	Phage gp6-like head-tail connector protein	NA
UHGV-2122512_49	eggNOG-mapper	632245.CLP_2693	Phage gp6-like head-tail connector protein	NA
UHGV-2122512_49	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-2122512_49	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-2122512_49	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-2122512_50	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-2122512_50	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-2122512_50	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-2122512_51	Structural annotation	PF05657	NA	NA
UHGV-2122512_52	PHROG	phrog_88	major tail protein	tail
UHGV-2122512_52	UniRef90	UniRef90_D4JVI8	Phage major tail protein, phi13 family	NA
UHGV-2122512_52	eggNOG-mapper	927704.SELR_11340	NA	NA
UHGV-2122512_52	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-2122512_52	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-2122512_53	UniRef90	UniRef90_D4JVI7	CdiA_C domain-containing protein	NA
UHGV-2122512_53	eggNOG-mapper	1042156.CXIVA_01840	Phage Mu protein F like protein	NA
UHGV-2122512_53	Pfam	PF18451	Contact-dependent growth inhibition CdiA C-terminal domain	CdiA_C
UHGV-2122512_53	COG	COG2369	NA	NA
UHGV-2122512_54	Structural annotation	PF11836	NA	NA
UHGV-2122512_55	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2122512_55	UniRef90	UniRef90_D4JVI5	Phage terminase-like protein, large subunit	NA
UHGV-2122512_55	eggNOG-mapper	903814.ELI_1296	Phage Terminase	NA
UHGV-2122512_55	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-2122512_55	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2122512_55	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2122512_55	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-2122512_56	PHROG	phrog_888	NA	unknown function
UHGV-2122512_56	UniRef90	UniRef90_B0MKT9	SHOCT domain-containing protein	NA
UHGV-2122512_56	eggNOG-mapper	445335.CBN_2977	Short C-terminal domain	NA
UHGV-2122512_56	Pfam	PF09851	Short C-terminal domain	SHOCT
UHGV-2122512_57	Structural annotation	PF17395, TIGR01725	NA	NA
UHGV-2122512_58	KOfam	K20283	GOLGA4; golgin subfamily A member 4	NA
UHGV-2122512_58	PHROG	phrog_9959	tail length tape measure protein	tail
UHGV-2122512_58	UniRef90	UniRef90_D4JVI1	Tape measure domain	NA
UHGV-2122512_58	eggNOG-mapper	755731.Clo1100_1173	tape measure	NA
UHGV-2122512_58	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-2122512_58	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-2122512_58	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-2122512_58	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-2122512_59	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-2122512_60	PHROG	phrog_25468	NA	unknown function
UHGV-2122512_60	UniRef90	UniRef90_B0MKT5	Hep/Hag repeat protein	NA
UHGV-2122512_60	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-2122512_60	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-2122512_60	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-2122512_62	PHROG	phrog_199	holin	lysis
UHGV-2122512_62	UniRef90	UniRef90_D4JVH8	Toxin secretion/phage lysis holin	NA
UHGV-2122512_62	eggNOG-mapper	1216932.CM240_0630	toxin secretion phage lysis holin	NA
UHGV-2122512_62	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-2122512_62	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-2122512_62	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-2122512_62	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-2122512_63	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-2122512_63	PHROG	phrog_7767	metallo-endopeptidase	other
UHGV-2122512_63	UniRef90	UniRef90_R6RKB1	Lyzozyme M1 (1 4-beta-N-acetylmuramidase)	NA
UHGV-2122512_63	eggNOG-mapper	515620.EUBELI_01811	NA	NA
UHGV-2122512_63	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-2122512_63	Pfam	PF17516	ProQ C-terminal domain	ProQ_C
UHGV-2122512_63	COG	COG4942	Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB	NA
UHGV-2122512_63	Structural annotation	PF01551, PF18342, MF_01354, MF_00664, NF040883, COG0739	NA	NA