UHGV-2122931

Genome information

Genome length 29,761 bps

CDS count 32

Completeness 72.54% (medium-quality)

geNomad score 0.9807

Prediction confidence Confident

Genome information
Genome ID	UHGV-2122931
vOTU ID	vOTU-030458
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029606\|Ga0242783_100467
BioSample	SAMN05545029
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	72.54% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	7
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9807
Virus hallmark genes (geNomad)	1
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	12.88
Jumbo phage	No

Genome content
Genome length	29,761 bps
GC content	51.87%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	32
CDS density	93.22%
Average CDS length	871.59 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2122931_1	UniRef90	UniRef90_A0A350U042	MuF_C domain-containing protein (Fragment)	NA
UHGV-2122931_1	eggNOG-mapper	1232449.BAHV02000016_gene1805	NA	NA
UHGV-2122931_1	Pfam	PF18819	Phage MuF-C-terminal domain	MuF_C
UHGV-2122931_3	KOfam	K01371	CTSK; cathepsin K [EC:3.4.22.38]	NA
UHGV-2122931_3	PHROG	phrog_16701	peptidase	other
UHGV-2122931_3	UniRef90	UniRef90_A0A396NGZ7	Pept_C1 domain-containing protein	NA
UHGV-2122931_3	eggNOG-mapper	755731.Clo1100_1882	Papain family cysteine protease	NA
UHGV-2122931_3	Pfam	PF00112	Papain family cysteine protease	Peptidase_C1
UHGV-2122931_3	Pfam	PF07833	Copper amine oxidase N-terminal domain	Cu_amine_oxidN1
UHGV-2122931_3	COG	COG4870	Cysteine protease, C1A family	NA
UHGV-2122931_3	Structural annotation	PF00112, PF07833, COG4870	NA	NA
UHGV-2122931_4	KOfam	K17733	cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-]	NA
UHGV-2122931_4	PHROG	phrog_6523	endolysin	lysis
UHGV-2122931_4	UniRef90	UniRef90_A0A401LGC2	Peptidase_M15_4 domain-containing protein	NA
UHGV-2122931_4	eggNOG-mapper	642492.Clole_2733	D-alanyl-D-alanine carboxypeptidase	NA
UHGV-2122931_4	Pfam	PF13539	D-alanyl-D-alanine carboxypeptidase	Peptidase_M15_4
UHGV-2122931_4	COG	COG1876	LD-carboxypeptidase LdcB, LAS superfamily	NA
UHGV-2122931_5	PHROG	phrog_199	holin	lysis
UHGV-2122931_5	UniRef90	UniRef90_R5ABW3	Putative holin	NA
UHGV-2122931_5	eggNOG-mapper	411460.RUMTOR_02100	NA	NA
UHGV-2122931_5	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-2122931_5	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-2122931_5	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-2122931_6	PHROG	phrog_2310	NA	unknown function
UHGV-2122931_6	eggNOG-mapper	1460635.JCM19038_2823	NA	NA
UHGV-2122931_8	Structural annotation	PF13157	NA	NA
UHGV-2122931_9	PHROG	phrog_18723	NA	unknown function
UHGV-2122931_10	KOfam	K19721	COL5AS; collagen type V/XI/XXIV/XXVII, alpha	NA
UHGV-2122931_10	PHROG	phrog_25888	NA	unknown function
UHGV-2122931_10	eggNOG-mapper	1232443.BAIA02000078_gene14	nuclear chromosome segregation	NA
UHGV-2122931_10	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-2122931_10	Pfam	PF17891	Mu-like prophage FluMu N-terminal domain	FluMu_N
UHGV-2122931_10	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-2122931_11	PHROG	phrog_15239	NA	unknown function
UHGV-2122931_11	UniRef90	UniRef90_R5AJ41	Conserved domain protein	NA
UHGV-2122931_12	PHROG	phrog_1357	major head protein	head and packaging
UHGV-2122931_12	UniRef90	UniRef90_UPI000B8B3F29	N4-gp56 family major capsid protein	NA
UHGV-2122931_12	eggNOG-mapper	657322.FPR_02330	NA	NA
UHGV-2122931_12	Pfam	PF13252	NA	DUF4043
UHGV-2122931_12	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-2122931_12	Structural annotation	PF13252, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-2122931_13	PHROG	phrog_13908	NA	unknown function
UHGV-2122931_13	eggNOG-mapper	1321782.HMPREF1986_00346	NA	NA
UHGV-2122931_14	KOfam	K07584	NA	NA
UHGV-2122931_14	PHROG	phrog_4478	peptidase	other
UHGV-2122931_14	UniRef90	UniRef90_A0A7C6L8N4	Ribosomal-processing cysteine protease Prp	NA
UHGV-2122931_14	eggNOG-mapper	1449126.JQKL01000003_gene1697	Cysteine protease Prp	NA
UHGV-2122931_14	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-2122931_14	COG	COG2868	NA	NA
UHGV-2122931_14	Structural annotation	PF04327, NF011124, COG2868	NA	NA
UHGV-2122931_15	PHROG	phrog_156	portal protein	head and packaging
UHGV-2122931_15	eggNOG-mapper	748224.HMPREF9436_01396	NA	NA
UHGV-2122931_15	Structural annotation	PF16510, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-2122931_16	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2122931_16	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-2122931_16	UniRef90	UniRef90_A0A329UJ95	Terminase-like family protein	NA
UHGV-2122931_16	eggNOG-mapper	748224.HMPREF9436_02548	Terminase-like family	NA
UHGV-2122931_16	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-2122931_16	COG	COG1783	Phage terminase large subunit	NA
UHGV-2122931_16	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-2122931_17	Structural annotation	PF06056	NA	NA
UHGV-2122931_19	PHROG	phrog_4292	NA	unknown function
UHGV-2122931_19	eggNOG-mapper	743719.PaelaDRAFT_5640	NA	NA
UHGV-2122931_20	Structural annotation	PF11132	NA	NA
UHGV-2122931_21	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-2122931_21	eggNOG-mapper	693746.OBV_43240	NA	NA
UHGV-2122931_21	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-2122931_21	Structural annotation	PF01507, MF_00064, TIGR00434, COG0175	NA	NA
UHGV-2122931_22	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-2122931_22	PHROG	phrog_116	DNA methyltransferase	other
UHGV-2122931_22	UniRef90	UniRef90_R5AC34	DNA (cytosine-5-)-methyltransferase	NA
UHGV-2122931_22	eggNOG-mapper	1121334.KB911073_gene1852	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-2122931_22	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-2122931_22	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-2122931_22	COG	COG0270	DNA-cytosine methylase	NA
UHGV-2122931_22	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-2122931_23	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-2122931_23	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2122931_23	UniRef90	UniRef90_A0A352UR43	Single-stranded DNA-binding protein	NA
UHGV-2122931_23	eggNOG-mapper	97138.C820_02339	Single-stranded DNA-binding protein	NA
UHGV-2122931_23	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-2122931_23	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-2122931_23	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2122931_23	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-2122931_23	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-2122931_25	PHROG	phrog_7566	NA	unknown function
UHGV-2122931_25	eggNOG-mapper	1280698.AUJS01000007_gene1020	NA	NA
UHGV-2122931_26	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2122931_26	eggNOG-mapper	642492.Clole_0725	NA	NA
UHGV-2122931_26	Structural annotation	PF21578, NF041486	NA	NA
UHGV-2122931_27	PHROG	phrog_24518	NA	unknown function
UHGV-2122931_29	Structural annotation	PF06257, COG4466	NA	NA
UHGV-2122931_32	UniRef90	UniRef90_A0A352SIQ1	HTH cro/C1-type domain-containing protein	NA
UHGV-2122931_32	eggNOG-mapper	632245.CLP_2721	NA	NA
UHGV-2122931_32	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-2122931_32	Structural annotation	PF05339, NF041951, COG1396	NA	NA