UHGV-2123201

Genome information

Genome length 42,930 bps

CDS count 51

Completeness 99.16% (high-quality)

geNomad score 0.9758

Prediction confidence Confident

Genome information
Genome ID	UHGV-2123201
vOTU ID	vOTU-012527
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029686\|Ga0245204_100121\|provirus_61002_103931
BioSample	SAMEA3449256
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.16% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	23
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9758
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	57.9
Jumbo phage	No

Genome content
Genome length	42,930 bps
GC content	43.66%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	51
CDS density	91.15%
Average CDS length	771.06 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2123201_1	KOfam	K06334	cotJC; spore coat protein JC	NA
UHGV-2123201_1	PHROG	phrog_7573	NA	unknown function
UHGV-2123201_1	UniRef90	UniRef90_A0A1C6BUE8	Probable manganese catalase	NA
UHGV-2123201_1	eggNOG-mapper	476272.RUMHYD_01849	NA	NA
UHGV-2123201_1	Pfam	PF05067	Manganese containing catalase	Mn_catalase
UHGV-2123201_1	COG	COG3546	Mn-containing catalase (includes spore coat protein CotJC)	NA
UHGV-2123201_1	Structural annotation	PF05067, MF_00931, TIGR04535, COG3546	NA	NA
UHGV-2123201_2	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-2123201_2	PHROG	phrog_95	integrase	integration and excision
UHGV-2123201_2	UniRef90	UniRef90_A0A417CPX1	Recombinase family protein	NA
UHGV-2123201_2	eggNOG-mapper	411459.RUMOBE_00967	COG COG1961 Site-specific recombinases, DNA invertase Pin homologs	NA
UHGV-2123201_2	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-2123201_2	Pfam	PF07508	Recombinase	Recombinase
UHGV-2123201_2	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-2123201_2	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-2123201_2	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-2123201_3	PHROG	phrog_215	structural protein with Ig domain	head and packaging
UHGV-2123201_3	UniRef90	UniRef90_UPI001896C517	Ig-like domain-containing protein	NA
UHGV-2123201_3	eggNOG-mapper	1160721.RBI_I01524	NA	NA
UHGV-2123201_3	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-2123201_3	Structural annotation	PF02368, PF11611, PF21461, MF_00791, NF003967, NF005261, COG2967	NA	NA
UHGV-2123201_4	PHROG	phrog_87	metallo-protease	other
UHGV-2123201_4	UniRef90	UniRef90_UPI001D02322C	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-2123201_4	eggNOG-mapper	1121115.AXVN01000006_gene2176	NA	NA
UHGV-2123201_4	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-2123201_4	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-2123201_4	Structural annotation	PF06114, COG2856	NA	NA
UHGV-2123201_5	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2123201_5	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-2123201_5	UniRef90	UniRef90_UPI00189B6C8D	helix-turn-helix domain-containing protein	NA
UHGV-2123201_5	eggNOG-mapper	1321779.HMPREF1984_01336	sequence-specific DNA binding	NA
UHGV-2123201_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2123201_5	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-2123201_6	UniRef90	UniRef90_UPI00189AB117	NA	NA
UHGV-2123201_6	eggNOG-mapper	257314.LJ_1456	NA	NA
UHGV-2123201_6	Pfam	PF05339	NA	DUF739
UHGV-2123201_6	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-2123201_6	Structural annotation	PF05339, NF002773, COG1476	NA	NA
UHGV-2123201_7	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-2123201_7	UniRef90	UniRef90_A0A373AA96	Toxin Bro	NA
UHGV-2123201_7	eggNOG-mapper	478749.BRYFOR_07645	Phage regulatory protein	NA
UHGV-2123201_7	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-2123201_7	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-2123201_7	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-2123201_7	Structural annotation	PF09669, TIGR02681, COG3646	NA	NA
UHGV-2123201_9	PHROG	phrog_9607	NA	unknown function
UHGV-2123201_9	eggNOG-mapper	1304866.K413DRAFT_4791	NA	NA
UHGV-2123201_9	Structural annotation	PF02883, MF_00791, NF012200, COG3354	NA	NA
UHGV-2123201_10	PHROG	phrog_2717	NA	unknown function
UHGV-2123201_10	eggNOG-mapper	552398.HMPREF0866_02231	NA	NA
UHGV-2123201_13	PHROG	phrog_3777	NA	unknown function
UHGV-2123201_13	UniRef90	UniRef90_UPI0018AB338A	NA	NA
UHGV-2123201_13	eggNOG-mapper	411460.RUMTOR_02064	NA	NA
UHGV-2123201_13	Pfam	PF12957	NA	DUF3846
UHGV-2123201_13	Structural annotation	PF12957	NA	NA
UHGV-2123201_14	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-2123201_14	PHROG	phrog_1499	NA	unknown function
UHGV-2123201_14	UniRef90	UniRef90_UPI00189C25B6	AAA family ATPase	NA
UHGV-2123201_14	eggNOG-mapper	411462.DORLON_00812	AAA ATPase domain	NA
UHGV-2123201_14	Pfam	PF13476	AAA domain	AAA_23
UHGV-2123201_14	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-2123201_14	Structural annotation	PF11398, MF_00365, TIGR00634, COG0497	NA	NA
UHGV-2123201_15	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2123201_15	UniRef90	UniRef90_A0A0R1VMU2	Pathogenesis-related transcriptional factor and ERF protein	NA
UHGV-2123201_15	eggNOG-mapper	645991.Sgly_0324	NA	NA
UHGV-2123201_15	Structural annotation	PF17375	NA	NA
UHGV-2123201_16	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2123201_16	UniRef90	UniRef90_UPI001897B051	AAA family ATPase	NA
UHGV-2123201_16	eggNOG-mapper	411462.DORLON_00811	AAA domain	NA
UHGV-2123201_16	Pfam	PF13479	AAA domain	AAA_24
UHGV-2123201_16	Structural annotation	PF13479, MF_00268, TIGR01618, COG0468	NA	NA
UHGV-2123201_17	PHROG	phrog_2698	NA	unknown function
UHGV-2123201_17	UniRef90	UniRef90_UPI00189B1EC1	NA	NA
UHGV-2123201_17	eggNOG-mapper	478749.BRYFOR_07585	NA	NA
UHGV-2123201_17	Structural annotation	PF05037	NA	NA
UHGV-2123201_18	KOfam	K17677	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	NA
UHGV-2123201_18	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2123201_18	UniRef90	UniRef90_A0A174B1D7	Type-1 restriction enzyme R protein	NA
UHGV-2123201_18	eggNOG-mapper	411462.DORLON_00809	helicase superfamily c-terminal domain	NA
UHGV-2123201_18	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-2123201_18	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-2123201_18	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-2123201_18	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-2123201_18	Structural annotation	PF04851, PF16203, MF_01489, NF008521, COG1061	NA	NA
UHGV-2123201_19	KOfam	K07505	repA; regulatory protein RepA	NA
UHGV-2123201_19	PHROG	phrog_2597	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-2123201_19	UniRef90	UniRef90_UPI0018AABA9E	AAA family ATPase	NA
UHGV-2123201_19	eggNOG-mapper	610130.Closa_1370	Primase C terminal 2 (PriCT-2)	NA
UHGV-2123201_19	Pfam	PF08707	Primase C terminal 2 (PriCT-2)	PriCT_2
UHGV-2123201_19	Pfam	PF13481	AAA domain	AAA_25
UHGV-2123201_19	COG	COG3598	RecA-family ATPase	NA
UHGV-2123201_19	Structural annotation	PF13481, MF_00348, MF_00700, TIGR03878, COG3598	NA	NA
UHGV-2123201_20	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-2123201_20	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2123201_20	UniRef90	UniRef90_UPI001D011E89	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-2123201_20	eggNOG-mapper	1235792.C808_05386	Endodeoxyribonuclease RusA	NA
UHGV-2123201_20	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-2123201_20	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-2123201_20	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-2123201_23	eggNOG-mapper	1298920.KI911353_gene4863	NA	NA
UHGV-2123201_27	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2123201_27	UniRef90	UniRef90_R6ZAS5	GED domain-containing protein	NA
UHGV-2123201_27	eggNOG-mapper	476272.RUMHYD_02841	NA	NA
UHGV-2123201_27	Structural annotation	PF02996	NA	NA
UHGV-2123201_28	PHROG	phrog_3634	NA	unknown function
UHGV-2123201_28	eggNOG-mapper	411459.RUMOBE_00941	COG NOG22561 non supervised orthologous group	NA
UHGV-2123201_28	COG	COG0457	Tetratricopeptide (TPR) repeat	NA
UHGV-2123201_29	PHROG	phrog_509	terminase small subunit	head and packaging
UHGV-2123201_29	UniRef90	UniRef90_UPI00189AF2D9	phage terminase small subunit	NA
UHGV-2123201_29	eggNOG-mapper	552396.HMPREF0863_04210	DNA packaging	NA
UHGV-2123201_29	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-2123201_29	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-2123201_29	COG	COG5484	NA	NA
UHGV-2123201_29	Structural annotation	NF040601, COG5484	NA	NA
UHGV-2123201_30	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2123201_30	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-2123201_30	UniRef90	UniRef90_UPI0018985A97	PBSX family phage terminase large subunit	NA
UHGV-2123201_30	eggNOG-mapper	411461.DORFOR_00750	COG COG1783 Phage terminase large subunit	NA
UHGV-2123201_30	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-2123201_30	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-2123201_30	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2123201_30	COG	COG1783	Phage terminase large subunit	NA
UHGV-2123201_30	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-2123201_31	PHROG	phrog_533	portal protein	head and packaging
UHGV-2123201_31	UniRef90	UniRef90_UPI001897501E	phage portal protein	NA
UHGV-2123201_31	eggNOG-mapper	411461.DORFOR_00749	COG NOG25118 non supervised orthologous group	NA
UHGV-2123201_31	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2123201_31	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-2123201_32	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2123201_32	UniRef90	UniRef90_UPI001C03686D	phage minor capsid protein	NA
UHGV-2123201_32	eggNOG-mapper	1235799.C818_04219	Phage minor capsid protein 2	NA
UHGV-2123201_32	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2123201_32	COG	COG2369	NA	NA
UHGV-2123201_32	Structural annotation	PF06152	NA	NA
UHGV-2123201_33	PHROG	phrog_15041	NA	unknown function
UHGV-2123201_33	eggNOG-mapper	1304866.K413DRAFT_0808	NA	NA
UHGV-2123201_33	Structural annotation	PF10827	NA	NA
UHGV-2123201_34	UniRef90	UniRef90_UPI0011C722A7	ribbon-helix-helix domain-containing protein	NA
UHGV-2123201_34	eggNOG-mapper	663952.SDD27957_09060	NA	NA
UHGV-2123201_34	Structural annotation	PF01402, NF041793, COG4710	NA	NA
UHGV-2123201_35	PHROG	phrog_1760	anti-termination protein	transcription regulation
UHGV-2123201_35	UniRef90	UniRef90_UPI00189A7D41	ORF6N domain-containing protein	NA
UHGV-2123201_35	eggNOG-mapper	476272.RUMHYD_02879	ORF6N domain	NA
UHGV-2123201_35	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-2123201_35	Structural annotation	PF10543, PF13058, TIGR02681, COG3646, COG2856	NA	NA
UHGV-2123201_36	KOfam	K07584	NA	NA
UHGV-2123201_36	PHROG	phrog_4478	peptidase	other
UHGV-2123201_36	UniRef90	UniRef90_UPI0018973E3D	ribosomal-processing cysteine protease Prp	NA
UHGV-2123201_36	eggNOG-mapper	411461.DORFOR_00746	Pfam:Peptidase_C108	NA
UHGV-2123201_36	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-2123201_36	COG	COG2868	NA	NA
UHGV-2123201_36	Structural annotation	PF04327, NF011124, COG2868	NA	NA
UHGV-2123201_37	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-2123201_37	eggNOG-mapper	411461.DORFOR_00745	NA	NA
UHGV-2123201_37	Structural annotation	PF10788, MF_02110	NA	NA
UHGV-2123201_38	PHROG	phrog_10	major head protein	head and packaging
UHGV-2123201_38	UniRef90	UniRef90_UPI0018984B83	phage major capsid protein	NA
UHGV-2123201_38	eggNOG-mapper	411461.DORFOR_00744	COG NOG20168 non supervised orthologous group	NA
UHGV-2123201_38	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2123201_38	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2123201_38	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2123201_38	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2123201_39	PHROG	phrog_541	head-tail adaptor	connector
UHGV-2123201_39	eggNOG-mapper	1304866.K413DRAFT_3039	NA	NA
UHGV-2123201_40	PHROG	phrog_3366	NA	unknown function
UHGV-2123201_40	Pfam	PF20536	NA	DUF6751
UHGV-2123201_40	Structural annotation	PF20536	NA	NA
UHGV-2123201_41	PHROG	phrog_556	minor head protein	head and packaging
UHGV-2123201_41	UniRef90	UniRef90_UPI001D084F02	minor capsid protein	NA
UHGV-2123201_41	eggNOG-mapper	1449050.JNLE01000003_gene3886	NA	NA
UHGV-2123201_41	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-2123201_41	Structural annotation	PF11114	NA	NA
UHGV-2123201_42	PHROG	phrog_3266	tail completion	connector
UHGV-2123201_42	Structural annotation	PF12691	NA	NA
UHGV-2123201_43	PHROG	phrog_3099	NA	unknown function
UHGV-2123201_43	eggNOG-mapper	476272.RUMHYD_01782	NA	NA
UHGV-2123201_43	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-2123201_44	PHROG	phrog_11299	NA	unknown function
UHGV-2123201_44	eggNOG-mapper	33035.JPJF01000106_gene3125	NA	NA
UHGV-2123201_44	Structural annotation	PF10666	NA	NA
UHGV-2123201_45	PHROG	phrog_706	NA	unknown function
UHGV-2123201_45	UniRef90	UniRef90_UPI00189B451E	Gp15 family bacteriophage protein	NA
UHGV-2123201_45	eggNOG-mapper	476272.RUMHYD_01784	Bacteriophage Gp15 protein	NA
UHGV-2123201_45	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-2123201_45	Structural annotation	PF06854	NA	NA
UHGV-2123201_46	PHROG	phrog_28918	NA	unknown function
UHGV-2123201_46	UniRef90	UniRef90_A0A1C5P271	Chromosome segregation protein	NA
UHGV-2123201_46	eggNOG-mapper	411459.RUMOBE_01384	phage tail tape measure protein	NA
UHGV-2123201_46	COG	COG5412	Phage-related protein	NA
UHGV-2123201_47	PHROG	phrog_1194	NA	unknown function
UHGV-2123201_47	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-2123201_48	KOfam	K06237	COL4A; collagen type IV alpha	NA
UHGV-2123201_48	PHROG	phrog_6616	tail protein	tail
UHGV-2123201_48	UniRef90	UniRef90_UPI001899D1AB	collagen-like protein	NA
UHGV-2123201_48	eggNOG-mapper	33035.JPJF01000043_gene1002	NA	NA
UHGV-2123201_48	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-2123201_48	Structural annotation	PF05113, PF13884, NF033848, COG3500	NA	NA
UHGV-2123201_50	PHROG	phrog_199	holin	lysis
UHGV-2123201_50	UniRef90	UniRef90_A0A417CRV5	Holin	NA
UHGV-2123201_50	eggNOG-mapper	411460.RUMTOR_02100	NA	NA
UHGV-2123201_50	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-2123201_50	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-2123201_50	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-2123201_51	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2123201_51	PHROG	phrog_435	endolysin	lysis
UHGV-2123201_51	UniRef90	UniRef90_A0A1C6J814	Sporulation-specific N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2123201_51	eggNOG-mapper	1522092.A0A090D823_9CAUD	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2123201_51	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-2123201_51	Pfam	PF05036	SPOR domain	SPOR
UHGV-2123201_51	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA