UHGV-2123305

Genome information

Genome length 41,235 bps

CDS count 55

Completeness 98.63% (high-quality)

geNomad score 0.9757

Prediction confidence Confident

Genome information
Genome ID	UHGV-2123305
vOTU ID	vOTU-008309
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029711\|Ga0245193_100598\|provirus_428_41662
BioSample	SAMEA3449245
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.63% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	25
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9757
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	63.57
Jumbo phage	No

Genome content
Genome length	41,235 bps
GC content	61.50%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	55
CDS density	92.39%
Average CDS length	694.26 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2123305_1	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-2123305_1	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-2123305_1	UniRef90	UniRef90_A0A316S054	Transcriptional regulator	NA
UHGV-2123305_1	eggNOG-mapper	718252.FP2_06870	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-2123305_1	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2123305_1	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-2123305_1	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-2123305_1	Structural annotation	PF00717, PF01381, MF_00015, MF_00535, TIGR00498, NF041951, COG1974	NA	NA
UHGV-2123305_2	UniRef90	UniRef90_A0A316SCA5	HTH cro/C1-type domain-containing protein	NA
UHGV-2123305_2	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-2123305_3	UniRef90	UniRef90_A0A316S1J6	HTH cro/C1-type domain-containing protein	NA
UHGV-2123305_3	eggNOG-mapper	445972.ANACOL_01800	NA	NA
UHGV-2123305_3	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-2123305_3	Structural annotation	PF05339, MF_00535, NF041951, COG3655	NA	NA
UHGV-2123305_6	eggNOG-mapper	596152.DesU5LDRAFT_1910	NA	NA
UHGV-2123305_6	Structural annotation	PF03787, TIGR02581, COG1604	NA	NA
UHGV-2123305_8	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-2123305_8	UniRef90	UniRef90_A0A3E2XB65	NA	NA
UHGV-2123305_8	eggNOG-mapper	1408437.JNJN01000081_gene1518	NA	NA
UHGV-2123305_8	Pfam	PF10926	NA	DUF2800
UHGV-2123305_8	COG	COG2887	RecB family exonuclease	NA
UHGV-2123305_8	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-2123305_9	PHROG	phrog_112	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2123305_9	UniRef90	UniRef90_A0A3E2XCH4	NA	NA
UHGV-2123305_9	eggNOG-mapper	180332.JTGN01000004_gene2303	NA	NA
UHGV-2123305_9	Pfam	PF10991	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
UHGV-2123305_9	Structural annotation	PF10991, MF_04153	NA	NA
UHGV-2123305_10	KOfam	K02334	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	NA
UHGV-2123305_10	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-2123305_10	UniRef90	UniRef90_A0A3E2XCZ3	POLAc domain-containing protein	NA
UHGV-2123305_10	eggNOG-mapper	1408437.JNJN01000045_gene604	DNA polymerase	NA
UHGV-2123305_10	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-2123305_10	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-2123305_10	Structural annotation	PF00476, MF_04101, NF011540, COG0749	NA	NA
UHGV-2123305_11	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-2123305_12	PHROG	phrog_256	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2123305_12	UniRef90	UniRef90_A0A3E2XCJ5	Virulence-associated protein E	NA
UHGV-2123305_12	eggNOG-mapper	1120971.AUCA01000043_gene1172	Virulence-associated protein E	NA
UHGV-2123305_12	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-2123305_12	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-2123305_12	Structural annotation	PF05272, MF_04000, NF005477, NF040562, COG5545	NA	NA
UHGV-2123305_13	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2123305_13	UniRef90	UniRef90_UPI001A9B532E	VRR-NUC domain-containing protein	NA
UHGV-2123305_13	eggNOG-mapper	411473.RUMCAL_00894	VRR_NUC	NA
UHGV-2123305_13	Structural annotation	PF01870, COG1637	NA	NA
UHGV-2123305_14	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-2123305_14	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2123305_14	UniRef90	UniRef90_A0A3E2XB72	DEAD/DEAH box helicase	NA
UHGV-2123305_14	eggNOG-mapper	1203606.HMPREF1526_00244	snf2 family	NA
UHGV-2123305_14	PADLOC	DpdE_00010	DpdE	DPD
UHGV-2123305_14	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-2123305_14	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-2123305_14	Structural annotation	PF13872, PF16203, MF_01821, NF041790, COG0553	NA	NA
UHGV-2123305_15	Structural annotation	PF07374	NA	NA
UHGV-2123305_16	PHROG	phrog_8680	NA	unknown function
UHGV-2123305_16	UniRef90	UniRef90_A0A3R6D7I3	NA	NA
UHGV-2123305_16	eggNOG-mapper	1229517.AMFD01000023_gene1324	NA	NA
UHGV-2123305_16	Pfam	PF14386	NA	DUF4417
UHGV-2123305_16	Structural annotation	PF14386, NF041059	NA	NA
UHGV-2123305_17	Structural annotation	PF03496, MF_04142, NF040688	NA	NA
UHGV-2123305_21	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-2123305_21	PHROG	phrog_498	DNA methyltransferase	other
UHGV-2123305_21	UniRef90	UniRef90_A0A3E2XCB9	Methyltransferase	NA
UHGV-2123305_21	eggNOG-mapper	1487921.DP68_08835	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-2123305_21	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-2123305_21	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-2123305_21	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-2123305_21	COG	COG0863	DNA modification methylase	NA
UHGV-2123305_21	Structural annotation	PF01555, PF02195, MF_02015, MF_01872, NF010253, TIGR04285, COG0863, COG1475	NA	NA
UHGV-2123305_22	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-2123305_22	UniRef90	UniRef90_A0A1Y0F8T2	Small terminase subunit	NA
UHGV-2123305_22	eggNOG-mapper	1416334.X2CXN2_9CAUD	endonuclease activity	NA
UHGV-2123305_23	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2123305_23	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-2123305_23	UniRef90	UniRef90_A0A3E2XCJ2	PBSX family phage terminase large subunit	NA
UHGV-2123305_23	eggNOG-mapper	665956.HMPREF1032_02957	Phage terminase, large subunit, PBSX family	NA
UHGV-2123305_23	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-2123305_23	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-2123305_23	COG	COG1783	Phage terminase large subunit	NA
UHGV-2123305_23	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-2123305_24	PHROG	phrog_533	portal protein	head and packaging
UHGV-2123305_24	UniRef90	UniRef90_A0A3E2XD02	Phage portal protein	NA
UHGV-2123305_24	eggNOG-mapper	1449050.JNLE01000003_gene3894	NA	NA
UHGV-2123305_24	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2123305_24	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-2123305_25	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2123305_25	UniRef90	UniRef90_A0A1C6H425	Phage minor capsid protein 2	NA
UHGV-2123305_25	eggNOG-mapper	411473.RUMCAL_01925	NA	NA
UHGV-2123305_25	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2123305_25	COG	COG2369	NA	NA
UHGV-2123305_25	Structural annotation	PF06152	NA	NA
UHGV-2123305_26	eggNOG-mapper	1235835.C814_03388	NA	NA
UHGV-2123305_27	PHROG	phrog_4709	NA	unknown function
UHGV-2123305_27	eggNOG-mapper	509191.AEDB02000020_gene3264	NA	NA
UHGV-2123305_32	UniRef90	UniRef90_A0A7C6JWP4	Helix-turn-helix transcriptional regulator	NA
UHGV-2123305_32	eggNOG-mapper	1408437.JNJN01000040_gene204	NA	NA
UHGV-2123305_32	Structural annotation	PF13560, TIGR02612, COG1396	NA	NA
UHGV-2123305_33	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-2123305_33	UniRef90	UniRef90_UPI00033ED4BB	phage scaffolding protein	NA
UHGV-2123305_33	eggNOG-mapper	1449050.JNLE01000003_gene3890	Phage minor structural protein GP20	NA
UHGV-2123305_33	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-2123305_33	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-2123305_34	PHROG	phrog_247	major head protein	head and packaging
UHGV-2123305_34	UniRef90	UniRef90_UPI0009303115	major capsid protein	NA
UHGV-2123305_34	eggNOG-mapper	33035.JPJF01000106_gene3132	NA	NA
UHGV-2123305_34	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-2123305_36	Structural annotation	PF20536	NA	NA
UHGV-2123305_37	PHROG	phrog_556	minor head protein	head and packaging
UHGV-2123305_37	UniRef90	UniRef90_UPI00102FEF69	minor capsid protein	NA
UHGV-2123305_37	eggNOG-mapper	525255.HMPREF0077_0381	Minor capsid protein	NA
UHGV-2123305_37	Structural annotation	PF11114	NA	NA
UHGV-2123305_38	PHROG	phrog_3266	tail completion	connector
UHGV-2123305_38	UniRef90	UniRef90_UPI000D830B30	chloramphenicol resistance protein	NA
UHGV-2123305_38	eggNOG-mapper	573061.Clocel_3537	NA	NA
UHGV-2123305_38	Structural annotation	PF12691	NA	NA
UHGV-2123305_39	PHROG	phrog_820	major tail protein	tail
UHGV-2123305_39	UniRef90	UniRef90_A0A174M1L1	S-l_SbsC_C domain-containing protein	NA
UHGV-2123305_39	eggNOG-mapper	748224.HMPREF9436_03330	NA	NA
UHGV-2123305_39	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-2123305_40	PHROG	phrog_4450	NA	unknown function
UHGV-2123305_40	Structural annotation	PF20378	NA	NA
UHGV-2123305_41	PHROG	phrog_706	NA	unknown function
UHGV-2123305_41	UniRef90	UniRef90_E2ZNP9	Bacteriophage Gp15 protein	NA
UHGV-2123305_41	eggNOG-mapper	748224.HMPREF9436_03328	Bacteriophage Gp15 protein	NA
UHGV-2123305_41	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-2123305_41	Structural annotation	PF06854	NA	NA
UHGV-2123305_42	PHROG	phrog_28775	tail length tape measure protein	tail
UHGV-2123305_42	UniRef90	UniRef90_A0A316RYK9	Phage tail tape measure protein	NA
UHGV-2123305_42	eggNOG-mapper	478749.BRYFOR_07547	Phage tail tape measure protein, TP901 family	NA
UHGV-2123305_42	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-2123305_42	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-2123305_42	COG	COG5283	Phage-related tail protein	NA
UHGV-2123305_42	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-2123305_43	PHROG	phrog_36410	NA	unknown function
UHGV-2123305_43	UniRef90	UniRef90_UPI00130E98E0	phage tail family protein	NA
UHGV-2123305_43	eggNOG-mapper	748224.HMPREF9436_03325	Phage tail protein	NA
UHGV-2123305_43	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-2123305_44	PHROG	phrog_538	minor tail protein	tail
UHGV-2123305_44	UniRef90	UniRef90_UPI001899858F	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-2123305_44	eggNOG-mapper	748224.HMPREF9436_03324	NA	NA
UHGV-2123305_44	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-2123305_44	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-2123305_45	PHROG	phrog_9534	head protein	head and packaging
UHGV-2123305_45	eggNOG-mapper	748224.HMPREF9436_03323	COG NOG18825 non supervised orthologous group	NA
UHGV-2123305_45	Structural annotation	PF21567	NA	NA
UHGV-2123305_46	PHROG	phrog_5717	tail protein	tail
UHGV-2123305_46	UniRef90	UniRef90_UPI001C4A6B93	Tail fiber protein	NA
UHGV-2123305_46	eggNOG-mapper	508419.F8J176_9CAUD	peptidoglycan catabolic process	NA
UHGV-2123305_46	Structural annotation	COG4675	NA	NA
UHGV-2123305_47	PHROG	phrog_5717	tail protein	tail
UHGV-2123305_47	eggNOG-mapper	1042156.CXIVA_07170	tail collar domain protein	NA
UHGV-2123305_47	COG	COG4675	Phage tail collar domain	NA
UHGV-2123305_47	Structural annotation	COG4675	NA	NA
UHGV-2123305_48	PHROG	phrog_5717	tail protein	tail
UHGV-2123305_48	eggNOG-mapper	1042156.CXIVA_07170	tail collar domain protein	NA
UHGV-2123305_48	COG	COG4675	Phage tail collar domain	NA
UHGV-2123305_48	Structural annotation	COG4675	NA	NA
UHGV-2123305_50	PHROG	phrog_1382	NA	unknown function
UHGV-2123305_50	eggNOG-mapper	411468.CLOSCI_00272	NA	NA
UHGV-2123305_51	KOfam	K07273	acm; lysozyme	NA
UHGV-2123305_51	PHROG	phrog_291	endolysin	lysis
UHGV-2123305_51	UniRef90	UniRef90_A0A173W4B0	Autolytic lysozyme	NA
UHGV-2123305_51	eggNOG-mapper	411483.FAEPRAA2165_00002	hydrolase, family 25	NA
UHGV-2123305_51	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-2123305_51	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-2123305_51	Structural annotation	PF01183, COG3757	NA	NA
UHGV-2123305_52	PHROG	phrog_1863	NA	unknown function
UHGV-2123305_52	eggNOG-mapper	748224.HMPREF9436_00408	NA	NA
UHGV-2123305_53	PHROG	phrog_263	holin	lysis
UHGV-2123305_53	UniRef90	UniRef90_A0A329UCA4	Phage holin	NA
UHGV-2123305_53	eggNOG-mapper	1121344.JHZO01000003_gene952	SPP1 phage holin	NA
UHGV-2123305_53	Pfam	PF04688	SPP1 phage holin	Holin_SPP1
UHGV-2123305_53	NCBIFam	TIGR01592.1	phage holin	NA
UHGV-2123305_53	Structural annotation	PF04688, TIGR01592	NA	NA
UHGV-2123305_54	KOfam	K24213	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	NA
UHGV-2123305_54	PHROG	phrog_38806	NA	unknown function
UHGV-2123305_54	eggNOG-mapper	411483.FAEPRAA2165_00757	NA	NA
UHGV-2123305_54	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen