UHGV-2123598

Genome information

Genome length 42,395 bps

CDS count 70

Completeness 85.81% (medium-quality)

geNomad score 0.9696

Prediction confidence Confident

Genome information
Genome ID	UHGV-2123598
vOTU ID	vOTU-030433
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029672\|Ga0243361_100041\|provirus_200_44843
BioSample	SAMEA2582079
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	85.81% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	20
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9696
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.81
Jumbo phage	No

Genome content
Genome length	42,395 bps
GC content	41.66%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	70
CDS density	91.84%
Average CDS length	562.20 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2123598_1	KOfam	K14059	int; integrase	NA
UHGV-2123598_1	PHROG	phrog_1	integrase	integration and excision
UHGV-2123598_1	UniRef90	UniRef90_C9LU47	Integrase family protein	NA
UHGV-2123598_1	eggNOG-mapper	546271.Selsp_1366	Belongs to the 'phage' integrase family	NA
UHGV-2123598_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-2123598_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2123598_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2123598_1	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-2123598_2	PHROG	phrog_2158	abortive infection resistance protein	moron, auxiliary metabolic gene and host takeover
UHGV-2123598_2	UniRef90	UniRef90_A0A7X2XHE0	Abi family protein	NA
UHGV-2123598_2	eggNOG-mapper	999423.HMPREF9161_01426	Abi-like protein	NA
UHGV-2123598_2	PADLOC	AbiD	AbiD	Abi
UHGV-2123598_2	Pfam	PF07751	Abi-like protein	Abi_2
UHGV-2123598_2	COG	COG4823	Abortive infection bacteriophage resistance protein	NA
UHGV-2123598_2	Structural annotation	PF07751, COG4823	NA	NA
UHGV-2123598_4	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-2123598_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2123598_4	UniRef90	UniRef90_A0A1H6Y6Z1	Helix-turn-helix domain-containing protein	NA
UHGV-2123598_4	eggNOG-mapper	445974.CLORAM_02966	Helix-turn-helix XRE-family like proteins	NA
UHGV-2123598_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2123598_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2123598_4	Structural annotation	PF13560, NF041951, COG3655	NA	NA
UHGV-2123598_5	UniRef90	UniRef90_A0A1B3X2M5	NA	NA
UHGV-2123598_5	eggNOG-mapper	445974.CLORAM_02965	NA	NA
UHGV-2123598_5	Pfam	PF02954	Bacterial regulatory protein, Fis family	HTH_8
UHGV-2123598_5	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-2123598_10	PHROG	phrog_7338	NA	unknown function
UHGV-2123598_10	Pfam	PF09035	Excisionase from transposon Tn916	Tn916-Xis
UHGV-2123598_10	Structural annotation	PF09035, TIGR01764, COG3311	NA	NA
UHGV-2123598_12	PHROG	phrog_34679	NA	unknown function
UHGV-2123598_16	PHROG	phrog_986	RNA-binding protein	DNA, RNA and nucleotide metabolism
UHGV-2123598_16	UniRef90	UniRef90_C7D2A3	ASCH domain-containing protein	NA
UHGV-2123598_16	eggNOG-mapper	226185.EF_2118	NA	NA
UHGV-2123598_16	Pfam	PF12961	NA	DUF3850
UHGV-2123598_19	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-2123598_19	PHROG	phrog_67	DNA methyltransferase	other
UHGV-2123598_19	UniRef90	UniRef90_A0A837R2P0	Methyltransferase	NA
UHGV-2123598_19	eggNOG-mapper	1217656.F964_00563	DNA methylase	NA
UHGV-2123598_19	PADLOC	MTase_II_00037	Type II methyltransferase	RM
UHGV-2123598_19	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-2123598_19	COG	COG0863	DNA modification methylase	NA
UHGV-2123598_19	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-2123598_22	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-2123598_22	PHROG	phrog_67	DNA methyltransferase	other
UHGV-2123598_22	UniRef90	UniRef90_A0A412X698	Methyltransferase	NA
UHGV-2123598_22	eggNOG-mapper	749222.Nitsa_1817	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-2123598_22	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-2123598_22	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-2123598_22	COG	COG0863	DNA modification methylase	NA
UHGV-2123598_22	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-2123598_24	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2123598_24	UniRef90	UniRef90_A0A7X2XHL8	NA	NA
UHGV-2123598_24	eggNOG-mapper	1009370.ALO_12696	NA	NA
UHGV-2123598_24	Pfam	PF06356	NA	DUF1064
UHGV-2123598_24	Structural annotation	PF06356, NF033179	NA	NA
UHGV-2123598_25	PHROG	phrog_2776	NA	unknown function
UHGV-2123598_25	UniRef90	UniRef90_K8E4E2	Lin2596 protein	NA
UHGV-2123598_25	eggNOG-mapper	663241.C9E2P0_9CAUD	NA	NA
UHGV-2123598_25	Structural annotation	PF06319, NF033832, COG5321	NA	NA
UHGV-2123598_26	PHROG	phrog_8514	NA	unknown function
UHGV-2123598_28	PHROG	phrog_1997	NA	unknown function
UHGV-2123598_31	UniRef90	UniRef90_A0A412X6I8	Zinc ribbon domain-containing protein	NA
UHGV-2123598_33	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2123598_33	eggNOG-mapper	1196322.A370_05744	NA	NA
UHGV-2123598_33	Structural annotation	PF21578	NA	NA
UHGV-2123598_34	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-2123598_34	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2123598_34	UniRef90	UniRef90_UPI0010329F51	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-2123598_34	eggNOG-mapper	401526.TcarDRAFT_1308	Endodeoxyribonuclease RusA	NA
UHGV-2123598_34	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-2123598_34	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-2123598_34	Structural annotation	PF05866, MF_00107, NF007305, COG4570	NA	NA
UHGV-2123598_35	Structural annotation	PF05263, TIGR01636	NA	NA
UHGV-2123598_36	KOfam	K22014	Nu1, Noh; terminase small subunit / prophage DNA-packing protein	NA
UHGV-2123598_36	PHROG	phrog_57	terminase small subunit	head and packaging
UHGV-2123598_36	UniRef90	UniRef90_UPI001E630431	terminase small subunit	NA
UHGV-2123598_36	eggNOG-mapper	864563.HMPREF9166_0572	transposase activity	NA
UHGV-2123598_36	COG	COG4220	Phage DNA packaging protein, Nu1 subunit of terminase	NA
UHGV-2123598_37	KOfam	K21512	gpA; terminase, large subunit [EC:3.1.21.4]	NA
UHGV-2123598_37	PHROG	phrog_15	terminase large subunit	head and packaging
UHGV-2123598_37	UniRef90	UniRef90_UPI001032C1C3	phage terminase large subunit family protein	NA
UHGV-2123598_37	eggNOG-mapper	883156.HMPREF9282_01236	Phage terminase large subunit (GpA)	NA
UHGV-2123598_37	Pfam	PF05876	Phage terminase large subunit gpA, ATPase domain	GpA_ATPase
UHGV-2123598_37	Pfam	PF20454	Terminase large subunit gpA, endonuclease domain	GpA_nuclease
UHGV-2123598_37	COG	COG5525	Phage terminase, large subunit GpA	NA
UHGV-2123598_37	Structural annotation	PF05876, PF20454, MF_04144, TIGR01547, COG5525	NA	NA
UHGV-2123598_38	PHROG	phrog_118	head-tail adaptor	connector
UHGV-2123598_39	PHROG	phrog_21	portal protein	head and packaging
UHGV-2123598_39	UniRef90	UniRef90_UPI001032DCB2	phage portal protein	NA
UHGV-2123598_39	eggNOG-mapper	935948.KE386495_gene1189	Phage portal protein, lambda family	NA
UHGV-2123598_39	Pfam	PF05136	Phage portal protein, lambda family	Phage_portal_2
UHGV-2123598_39	NCBIFam	TIGR01539.1	phage portal protein	NA
UHGV-2123598_39	COG	COG5511	Phage capsid protein	NA
UHGV-2123598_39	Structural annotation	PF05136, MF_04135, TIGR01539, COG5511	NA	NA
UHGV-2123598_40	KOfam	K06904	NA	NA
UHGV-2123598_40	PHROG	phrog_4523	major head and protease protein	head and packaging
UHGV-2123598_40	UniRef90	UniRef90_UPI0010329B31	HK97 family phage prohead protease	NA
UHGV-2123598_40	eggNOG-mapper	935948.KE386495_gene1188	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides	NA
UHGV-2123598_40	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-2123598_40	Pfam	PF10124	Mu-like prophage major head subunit gpT	Mu-like_gpT
UHGV-2123598_40	COG	COG3087	Cell division protein FtsN	NA
UHGV-2123598_40	Structural annotation	PF19821, PF04586, MF_04119, TIGR04387, TIGR01543, COG3740, COG4653	NA	NA
UHGV-2123598_41	PHROG	phrog_122	head decoration	head and packaging
UHGV-2123598_41	UniRef90	UniRef90_UPI0010328C61	NA	NA
UHGV-2123598_41	eggNOG-mapper	1235835.C814_03476	NA	NA
UHGV-2123598_41	Pfam	PF09956	NA	DUF2190
UHGV-2123598_41	COG	COG5471	Predicted phage recombinase, RecA/RadA family	NA
UHGV-2123598_41	Structural annotation	PF09956, COG5471	NA	NA
UHGV-2123598_42	Structural annotation	PF13856, COG5614	NA	NA
UHGV-2123598_43	eggNOG-mapper	910314.HMPREF9220_0616	NA	NA
UHGV-2123598_43	Structural annotation	PF05069, TIGR01725	NA	NA
UHGV-2123598_44	Structural annotation	PF20765, COG5003	NA	NA
UHGV-2123598_45	PHROG	phrog_290	minor tail protein	tail
UHGV-2123598_45	UniRef90	UniRef90_UPI001032C993	phage tail tube protein	NA
UHGV-2123598_45	eggNOG-mapper	910314.HMPREF9220_0614	NA	NA
UHGV-2123598_45	Pfam	PF18906	Phage tail tube protein	Phage_tube_2
UHGV-2123598_45	Structural annotation	PF18906, TIGR02241, TIGR02126, COG5437, COG3498	NA	NA
UHGV-2123598_48	PHROG	phrog_30973	NA	unknown function
UHGV-2123598_48	UniRef90	UniRef90_UPI001032C687	phage tail tape measure protein	NA
UHGV-2123598_48	eggNOG-mapper	484770.UFO1_2454	nuclear chromosome segregation	NA
UHGV-2123598_48	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-2123598_48	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-2123598_49	eggNOG-mapper	1273103.NM10_03091	NA	NA
UHGV-2123598_49	Structural annotation	PF05939, TIGR02217, COG4718	NA	NA
UHGV-2123598_50	PHROG	phrog_18	minor tail protein	tail
UHGV-2123598_50	UniRef90	UniRef90_UPI0018C58A28	NA	NA
UHGV-2123598_50	eggNOG-mapper	1273103.NM10_03086	Phage minor tail protein L	NA
UHGV-2123598_50	Pfam	PF05100	Phage minor tail protein L	Phage_tail_L
UHGV-2123598_50	COG	COG4672	Phage tail protein	NA
UHGV-2123598_50	Structural annotation	PF08875, TIGR01600, COG4672	NA	NA
UHGV-2123598_51	KOfam	K13695	nlpC; probable lipoprotein NlpC	NA
UHGV-2123598_51	PHROG	phrog_329	minor tail protein	tail
UHGV-2123598_51	UniRef90	UniRef90_UPI001032D989	NlpC/P60 family protein	NA
UHGV-2123598_51	eggNOG-mapper	1273103.NM10_03081	NlpC/P60 family	NA
UHGV-2123598_51	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-2123598_51	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-2123598_51	Structural annotation	PF00877, NF008096, COG0791	NA	NA
UHGV-2123598_52	PHROG	phrog_31	baseplate hub protein Tal	tail
UHGV-2123598_52	UniRef90	UniRef90_A0A316S7W9	Phage-tail_3 domain-containing protein	NA
UHGV-2123598_52	eggNOG-mapper	1273103.NM10_03076	cellulase activity	NA
UHGV-2123598_52	Pfam	PF13550	Putative phage tail protein	Phage-tail_3
UHGV-2123598_52	COG	COG1511	NA	NA
UHGV-2123598_52	Structural annotation	PF13550, PF00041, PF16323, NF040662, COG4733	NA	NA
UHGV-2123598_53	PHROG	phrog_9116	tail protein	tail
UHGV-2123598_53	UniRef90	UniRef90_UPI000DAE2B09	phage tail protein	NA
UHGV-2123598_53	eggNOG-mapper	556269.ACDQ01000009_gene1944	Phage Tail Collar Domain	NA
UHGV-2123598_53	Pfam	PF07484	Phage Tail Collar Domain	Collar
UHGV-2123598_53	COG	COG4675	Phage tail collar domain	NA
UHGV-2123598_53	Structural annotation	PF07484	NA	NA
UHGV-2123598_54	PHROG	phrog_1348	tail fiber protein	tail
UHGV-2123598_54	COG	COG2110	O-acetyl-ADP-ribose deacetylase (regulator of RNase III), contains Macro domain	NA
UHGV-2123598_54	Structural annotation	PF14301	NA	NA
UHGV-2123598_58	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-2123598_58	UniRef90	UniRef90_UPI000F0C7FC9	D-Ala-D-Ala carboxypeptidase family metallohydrolase	NA
UHGV-2123598_58	eggNOG-mapper	445971.ANASTE_02319	Peptidase M15	NA
UHGV-2123598_58	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-2123598_58	COG	COG3108	NA	NA
UHGV-2123598_58	Structural annotation	PF08291, COG3108	NA	NA
UHGV-2123598_61	UniRef90	UniRef90_UPI0010330145	ECF-type sigma factor	NA
UHGV-2123598_61	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-2123598_61	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-2123598_61	Structural annotation	PF08281, MF_00674, NF009180, COG1595	NA	NA
UHGV-2123598_62	eggNOG-mapper	1203606.HMPREF1526_01932	NA	NA
UHGV-2123598_63	UniRef90	UniRef90_A0A2A2IJF6	CopG family transcriptional regulator	NA
UHGV-2123598_63	eggNOG-mapper	469604.HMPREF0946_00961	NA	NA
UHGV-2123598_63	Structural annotation	PF12651, NF041793, COG4710	NA	NA
UHGV-2123598_64	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-2123598_64	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-2123598_64	UniRef90	UniRef90_A0A6S6XGD0	Phage antirepressor Ant	NA
UHGV-2123598_64	eggNOG-mapper	573061.Clocel_3580	Phage antirepressor protein	NA
UHGV-2123598_64	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-2123598_64	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-2123598_64	COG	COG3617	Prophage antirepressor	NA
UHGV-2123598_64	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA
UHGV-2123598_67	eggNOG-mapper	476272.RUMHYD_01954	NA	NA
UHGV-2123598_68	eggNOG-mapper	397290.C810_01330	NA	NA
UHGV-2123598_69	UniRef90	UniRef90_A0A7M1RS47	RNA polymerase sigma factor/ubiquitin-like protein	NA
UHGV-2123598_69	eggNOG-mapper	1378168.N510_03079	NA	NA
UHGV-2123598_70	PHROG	phrog_2389	QueD-like 6-pyruvoyl-tetrahydropterin synthase	moron, auxiliary metabolic gene and host takeover
UHGV-2123598_70	UniRef90	UniRef90_A0A1Y4N3X2	6-carboxy-5,6,7,8-tetrahydropterin synthase	NA
UHGV-2123598_70	eggNOG-mapper	1262914.BN533_01225	NA	NA
UHGV-2123598_70	Pfam	PF01242	6-pyruvoyl tetrahydropterin synthase	PTPS