UHGV-2124566

Genome information

Genome length 33,966 bps

CDS count 35

Completeness 74.30% (medium-quality)

geNomad score 0.9638

Prediction confidence Confident

Genome information
Genome ID	UHGV-2124566
vOTU ID	vOTU-016280
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029715\|Ga0245215_1000141\|provirus_221_34186
BioSample	SAMEA3449267
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	74.30% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9638
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	50.46
Jumbo phage	No

Genome content
Genome length	33,966 bps
GC content	61.35%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	35
CDS density	96.69%
Average CDS length	940.71 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2124566_1	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-2124566_1	PHROG	phrog_498	DNA methyltransferase	other
UHGV-2124566_1	UniRef90	UniRef90_A0A7X7I403	Methyltransferase	NA
UHGV-2124566_1	eggNOG-mapper	994573.T472_0214020	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-2124566_1	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-2124566_1	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-2124566_1	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-2124566_1	COG	COG0863	DNA modification methylase	NA
UHGV-2124566_1	Structural annotation	PF01555, PF02195, MF_02015, MF_01872, NF010253, TIGR04285, COG0863, COG1475	NA	NA
UHGV-2124566_2	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-2124566_2	UniRef90	UniRef90_A0A2V2FLZ3	Phage terminase small subunit P27 family	NA
UHGV-2124566_2	eggNOG-mapper	1209989.TepiRe1_2607	Phage terminase, small subunit	NA
UHGV-2124566_2	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-2124566_2	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-2124566_2	COG	COG3747	Phage terminase, small subunit	NA
UHGV-2124566_2	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-2124566_3	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2124566_3	UniRef90	UniRef90_A0A1Q6PTP4	Terminase	NA
UHGV-2124566_3	eggNOG-mapper	1408324.JNJK01000006_gene1378	Phage Terminase	NA
UHGV-2124566_3	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-2124566_3	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2124566_3	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2124566_3	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-2124566_4	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-2124566_4	PHROG	phrog_2323	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2124566_4	UniRef90	UniRef90_A0A371JDY4	HNH endonuclease	NA
UHGV-2124566_4	eggNOG-mapper	742740.HMPREF9474_01229	HNH endonuclease	NA
UHGV-2124566_4	Pfam	PF01844	HNH endonuclease	HNH
UHGV-2124566_4	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2124566_4	Structural annotation	PF01844, COG1403	NA	NA
UHGV-2124566_5	PHROG	phrog_2268	antitoxin from a toxin-antitoxin system	moron, auxiliary metabolic gene and host takeover
UHGV-2124566_5	UniRef90	UniRef90_A0A2A2I8L2	Antitoxin	NA
UHGV-2124566_5	eggNOG-mapper	646529.Desaci_1840	Antitoxin component of a toxin-antitoxin (TA) module	NA
UHGV-2124566_5	Pfam	PF02604	Antitoxin Phd_YefM, type II toxin-antitoxin system	PhdYeFM_antitox
UHGV-2124566_5	NCBIFam	TIGR01552.1	type II toxin-antitoxin system prevent-host-death family antitoxin	NA
UHGV-2124566_5	COG	COG2161	Antitoxin component YafN of the YafNO toxin-antitoxin module, PHD/YefM family	NA
UHGV-2124566_5	Structural annotation	PF02604, TIGR01552, COG2161	NA	NA
UHGV-2124566_6	KOfam	K19092	parE1_3_4; toxin ParE1/3/4	NA
UHGV-2124566_6	PHROG	phrog_2455	NA	unknown function
UHGV-2124566_6	UniRef90	UniRef90_A0A1G5RY22	Addiction module toxin, RelE/StbE family	NA
UHGV-2124566_6	eggNOG-mapper	555088.DealDRAFT_2737	TIGRFAM addiction module toxin, RelE StbE family	NA
UHGV-2124566_6	Pfam	PF05016	ParE toxin of type II toxin-antitoxin system, parDE	ParE_toxin
UHGV-2124566_6	COG	COG3668	Plasmid stabilization system protein ParE	NA
UHGV-2124566_6	Structural annotation	PF05016, TIGR00053, COG3668	NA	NA
UHGV-2124566_7	PHROG	phrog_12	portal protein	head and packaging
UHGV-2124566_7	UniRef90	UniRef90_A0A1Q6PTQ2	Phage portal protein	NA
UHGV-2124566_7	eggNOG-mapper	1121289.JHVL01000007_gene2755	Phage portal protein, HK97 family	NA
UHGV-2124566_7	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2124566_7	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-2124566_7	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2124566_7	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-2124566_8	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-2124566_8	PHROG	phrog_116	DNA methyltransferase	other
UHGV-2124566_8	UniRef90	UniRef90_A0A7X7P3W8	DNA (cytosine-5-)-methyltransferase	NA
UHGV-2124566_8	eggNOG-mapper	1216932.CM240_0666	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-2124566_8	PADLOC	oMTase_00004	orphan methyltransferase	RM
UHGV-2124566_8	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-2124566_8	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-2124566_8	COG	COG0270	DNA-cytosine methylase	NA
UHGV-2124566_8	Structural annotation	PF00145, MF_00786, TIGR00675, COG0270	NA	NA
UHGV-2124566_9	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-2124566_9	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-2124566_9	UniRef90	UniRef90_A0A2V2FK72	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-2124566_9	eggNOG-mapper	158190.SpiGrapes_2826	Belongs to the peptidase S14 family	NA
UHGV-2124566_9	Pfam	PF00574	Clp protease	CLP_protease
UHGV-2124566_9	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-2124566_9	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-2124566_10	PHROG	phrog_10	major head protein	head and packaging
UHGV-2124566_10	UniRef90	UniRef90_A0A2V2FGW4	Phage major capsid protein	NA
UHGV-2124566_10	eggNOG-mapper	696281.Desru_3549	TIGRFAM phage major capsid protein, HK97 family	NA
UHGV-2124566_10	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2124566_10	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2124566_10	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2124566_10	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2124566_11	PHROG	phrog_12102	NA	unknown function
UHGV-2124566_11	UniRef90	UniRef90_A0A7X7FI45	Head fiber protein	NA
UHGV-2124566_11	eggNOG-mapper	665956.HMPREF1032_02264	NA	NA
UHGV-2124566_12	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-2124566_12	UniRef90	UniRef90_A0A7X7FKE4	Phage gp6-like head-tail connector protein	NA
UHGV-2124566_12	eggNOG-mapper	1121116.KB894776_gene1858	Phage gp6-like head-tail connector protein	NA
UHGV-2124566_12	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-2124566_12	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-2124566_12	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-2124566_13	PHROG	phrog_25	head closure Hc1	connector
UHGV-2124566_13	UniRef90	UniRef90_A0A7X7FI16	Phage head closure protein	NA
UHGV-2124566_13	eggNOG-mapper	1027292.HMPREF9372_1256	Phage head-tail adaptor	NA
UHGV-2124566_13	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-2124566_13	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-2124566_13	COG	COG5614	Phage head-tail adaptor	NA
UHGV-2124566_13	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-2124566_14	Structural annotation	PF05657	NA	NA
UHGV-2124566_15	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2124566_15	UniRef90	UniRef90_UPI0004D682BE	HK97 gp10 family phage protein	NA
UHGV-2124566_15	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-2124566_15	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-2124566_15	Structural annotation	PF04883, TIGR01725	NA	NA
UHGV-2124566_16	PHROG	phrog_88	major tail protein	tail
UHGV-2124566_16	UniRef90	UniRef90_A0A7C6BMC6	Phage tail protein	NA
UHGV-2124566_16	eggNOG-mapper	1382315.JPOI01000001_gene276	Phage major tail protein phi13	NA
UHGV-2124566_16	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-2124566_16	COG	COG5276	NA	NA
UHGV-2124566_16	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-2124566_17	PHROG	phrog_8680	NA	unknown function
UHGV-2124566_17	UniRef90	UniRef90_A0A373V619	NA	NA
UHGV-2124566_17	eggNOG-mapper	411470.RUMGNA_02208	NA	NA
UHGV-2124566_17	Pfam	PF14386	NA	DUF4417
UHGV-2124566_17	Structural annotation	PF14386	NA	NA
UHGV-2124566_18	eggNOG-mapper	1321779.HMPREF1984_01309	Phage Mu protein F like protein	NA
UHGV-2124566_18	COG	COG2369	NA	NA
UHGV-2124566_18	Structural annotation	PF06167, NF041907	NA	NA
UHGV-2124566_20	eggNOG-mapper	1196031.ALEG01000039_gene1823	NA	NA
UHGV-2124566_22	KOfam	K19092	parE1_3_4; toxin ParE1/3/4	NA
UHGV-2124566_22	PHROG	phrog_2455	NA	unknown function
UHGV-2124566_22	UniRef90	UniRef90_A0A7C6FVQ7	Type II toxin-antitoxin system RelE/ParE family toxin	NA
UHGV-2124566_22	eggNOG-mapper	1449126.JQKL01000052_gene3065	addiction module toxin, RelE StbE family	NA
UHGV-2124566_22	Pfam	PF05016	ParE toxin of type II toxin-antitoxin system, parDE	ParE_toxin
UHGV-2124566_22	COG	COG3668	Plasmid stabilization system protein ParE	NA
UHGV-2124566_22	Structural annotation	PF05016, TIGR00053, COG3668	NA	NA
UHGV-2124566_23	PHROG	phrog_2268	antitoxin from a toxin-antitoxin system	moron, auxiliary metabolic gene and host takeover
UHGV-2124566_23	UniRef90	UniRef90_A0A7C6FS16	Antitoxin	NA
UHGV-2124566_23	eggNOG-mapper	580327.Tthe_0822	Antitoxin component of a toxin-antitoxin (TA) module	NA
UHGV-2124566_23	Pfam	PF02604	Antitoxin Phd_YefM, type II toxin-antitoxin system	PhdYeFM_antitox
UHGV-2124566_23	NCBIFam	TIGR01552.1	type II toxin-antitoxin system prevent-host-death family antitoxin	NA
UHGV-2124566_23	COG	COG2161	Antitoxin component YafN of the YafNO toxin-antitoxin module, PHD/YefM family	NA
UHGV-2124566_23	Structural annotation	PF02604, TIGR01552, COG2161	NA	NA
UHGV-2124566_24	KOfam	K10421	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	NA
UHGV-2124566_24	PHROG	phrog_13339	tail length tape measure protein	tail
UHGV-2124566_24	UniRef90	UniRef90_A0A1Q6PTR6	Phage tail tape measure protein	NA
UHGV-2124566_24	eggNOG-mapper	1476973.JMMB01000007_gene1771	Phage-related minor tail protein	NA
UHGV-2124566_24	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-2124566_24	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-2124566_24	COG	COG5283	Phage-related tail protein	NA
UHGV-2124566_24	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-2124566_25	PHROG	phrog_10079	NA	unknown function
UHGV-2124566_25	eggNOG-mapper	621372.ACIH01000214_gene1012	NA	NA
UHGV-2124566_26	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-2124566_26	UniRef90	UniRef90_A0A7C6FS63	Phage tail protein	NA
UHGV-2124566_26	eggNOG-mapper	931276.Cspa_c07550	tail component	NA
UHGV-2124566_26	COG	COG4722	Phage-related protein YomH	NA
UHGV-2124566_26	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-2124566_27	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-2124566_27	UniRef90	UniRef90_A0A7C6FP44	SH3 domain-containing protein	NA
UHGV-2124566_27	eggNOG-mapper	1443125.Z962_05575	Prophage endopeptidase tail	NA
UHGV-2124566_27	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-2124566_27	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-2124566_27	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-2124566_27	COG	COG4926	Phage-related protein	NA
UHGV-2124566_27	Structural annotation	PF14594, PF06848, TIGR01665, COG4926	NA	NA
UHGV-2124566_28	KOfam	K18454	deaA; chitin disaccharide deacetylase [EC:3.5.1.105]	NA
UHGV-2124566_28	UniRef90	UniRef90_C0W5W2	Carbohydrate binding domain protein	NA
UHGV-2124566_28	eggNOG-mapper	1195236.CTER_2813	Belongs to the glycosyl hydrolase 18 family	NA
UHGV-2124566_28	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-2124566_28	COG	COG3325	Chitinase, GH18 family	NA
UHGV-2124566_29	PHROG	phrog_4105	NA	unknown function
UHGV-2124566_29	eggNOG-mapper	610130.Closa_0762	NA	NA
UHGV-2124566_30	PHROG	phrog_962	holin	lysis
UHGV-2124566_30	UniRef90	UniRef90_A0A1W2A7S4	Holin, phage phi LC3 family	NA
UHGV-2124566_30	eggNOG-mapper	714961.BFZC1_06948	Bacteriophage holin	NA
UHGV-2124566_30	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-2124566_30	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-2124566_30	COG	COG5546	NA	NA
UHGV-2124566_30	Structural annotation	PF04531	NA	NA
UHGV-2124566_31	PHROG	phrog_1493	endolysin	lysis
UHGV-2124566_31	UniRef90	UniRef90_A0A1Q6PTR5	PG_binding_1 domain-containing protein	NA
UHGV-2124566_31	eggNOG-mapper	138119.DSY4643	NLP P60 protein	NA
UHGV-2124566_31	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-2124566_31	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-2124566_31	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-2124566_31	Structural annotation	PF01471, PF19087, NF041850, TIGR02219, COG3409, COG3103, COG0791	NA	NA
UHGV-2124566_32	PHROG	phrog_2308	NA	unknown function
UHGV-2124566_32	UniRef90	UniRef90_A0A853JLS7	Zinc finger MYND domain-containing protein	NA
UHGV-2124566_32	eggNOG-mapper	1235835.C814_01293	COG1961 Site-specific recombinases, DNA invertase Pin homologs	NA
UHGV-2124566_32	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-2124566_32	Structural annotation	PF06056, COG2771	NA	NA
UHGV-2124566_33	PHROG	phrog_2996	NA	unknown function
UHGV-2124566_33	Pfam	PF20612	SHOCT domain	SHOCT_2
UHGV-2124566_33	Structural annotation	PF20612	NA	NA
UHGV-2124566_34	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-2124566_34	PHROG	phrog_95	integrase	integration and excision
UHGV-2124566_34	UniRef90	UniRef90_UPI0005915061	recombinase family protein	NA
UHGV-2124566_34	eggNOG-mapper	573061.Clocel_0846	Resolvase, N terminal domain	NA
UHGV-2124566_34	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-2124566_34	Pfam	PF07508	Recombinase	Recombinase
UHGV-2124566_34	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-2124566_34	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-2124566_34	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-2124566_35	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-2124566_35	PHROG	phrog_95	integrase	integration and excision
UHGV-2124566_35	UniRef90	UniRef90_A0A6B4QSS5	Recombinase family protein	NA
UHGV-2124566_35	eggNOG-mapper	398512.JQKC01000005_gene5478	NA	NA
UHGV-2124566_35	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-2124566_35	Pfam	PF07508	Recombinase	Recombinase
UHGV-2124566_35	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-2124566_35	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-2124566_35	Structural annotation	PF00239, PF07508, PF18822, NF041201, COG1961	NA	NA