UHGV-2125194

Genome information

Genome length 34,535 bps

CDS count 43

Completeness 97.10% (high-quality)

geNomad score 0.9767

Prediction confidence Confident

Genome information
Genome ID	UHGV-2125194
vOTU ID	vOTU-007725
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029664\|Ga0245211_100043\|provirus_97550_132084
BioSample	SAMEA3449263
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.10% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9767
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	58.49
Jumbo phage	No

Genome content
Genome length	34,535 bps
GC content	60.54%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	43
CDS density	93.84%
Average CDS length	755.58 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2125194_1	KOfam	K14059	int; integrase	NA
UHGV-2125194_1	PHROG	phrog_1	integrase	integration and excision
UHGV-2125194_1	UniRef90	UniRef90_A0A3E2U2B4	Site-specific integrase	NA
UHGV-2125194_1	eggNOG-mapper	718252.FP2_06900	Phage integrase, N-terminal SAM-like domain	NA
UHGV-2125194_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-2125194_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2125194_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2125194_1	Structural annotation	PF00589, PF13102, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-2125194_2	eggNOG-mapper	641112.ACOK01000103_gene519	NA	NA
UHGV-2125194_3	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-2125194_3	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-2125194_3	UniRef90	UniRef90_A0A564U5Z2	LexA repressor	NA
UHGV-2125194_3	eggNOG-mapper	718252.FP2_06870	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-2125194_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2125194_3	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-2125194_3	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-2125194_3	Structural annotation	PF00717, PF12844, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-2125194_4	UniRef90	UniRef90_UPI001CD6A7E5	helix-turn-helix domain-containing protein	NA
UHGV-2125194_4	eggNOG-mapper	718252.FP2_06860	NA	NA
UHGV-2125194_4	Structural annotation	PF21291, NF041951, COG1476	NA	NA
UHGV-2125194_6	Structural annotation	PF13601, MF_01819, TIGR03433, COG1695	NA	NA
UHGV-2125194_7	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-2125194_7	UniRef90	UniRef90_D4K457	Prophage antirepressor	NA
UHGV-2125194_7	eggNOG-mapper	718252.FP2_06840	BRO family, N-terminal domain	NA
UHGV-2125194_7	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-2125194_7	COG	COG3617	Prophage antirepressor	NA
UHGV-2125194_8	UniRef90	UniRef90_A0A3E2U219	DNA-binding protein	NA
UHGV-2125194_8	eggNOG-mapper	718252.FP2_06830	NA	NA
UHGV-2125194_10	UniRef90	UniRef90_UPI001D0E65C2	NA	NA
UHGV-2125194_10	Structural annotation	PF12957	NA	NA
UHGV-2125194_11	Structural annotation	PF03677	NA	NA
UHGV-2125194_12	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-2125194_12	PHROG	phrog_1499	NA	unknown function
UHGV-2125194_12	UniRef90	UniRef90_UPI00122C2DDE	AAA family ATPase	NA
UHGV-2125194_12	eggNOG-mapper	1486428.A0A097BY67_9CAUD	NA	NA
UHGV-2125194_12	Pfam	PF13476	AAA domain	AAA_23
UHGV-2125194_12	Structural annotation	PF11398, MF_00365, TIGR00634, COG0497	NA	NA
UHGV-2125194_13	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2125194_13	UniRef90	UniRef90_UPI00122C2B12	ATP-binding protein	NA
UHGV-2125194_13	eggNOG-mapper	645991.Sgly_0321	AAA domain	NA
UHGV-2125194_13	Pfam	PF13479	AAA domain	AAA_24
UHGV-2125194_13	Structural annotation	PF13479, MF_00268, TIGR01618, COG0468	NA	NA
UHGV-2125194_14	PHROG	phrog_2698	NA	unknown function
UHGV-2125194_14	UniRef90	UniRef90_UPI00122C4984	NA	NA
UHGV-2125194_14	eggNOG-mapper	394503.Ccel_3308	NA	NA
UHGV-2125194_14	Structural annotation	PF05037	NA	NA
UHGV-2125194_15	KOfam	K17677	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	NA
UHGV-2125194_15	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2125194_15	UniRef90	UniRef90_UPI00122D00F7	DEAD/DEAH box helicase	NA
UHGV-2125194_15	eggNOG-mapper	610130.Closa_1369	DEAD-like helicases superfamily	NA
UHGV-2125194_15	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-2125194_15	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-2125194_15	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-2125194_15	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-2125194_15	Structural annotation	PF04851, PF16203, MF_01489, NF008521, COG1061	NA	NA
UHGV-2125194_16	KOfam	K07505	repA; regulatory protein RepA	NA
UHGV-2125194_16	PHROG	phrog_2597	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-2125194_16	UniRef90	UniRef90_UPI00122CD8B8	AAA family ATPase	NA
UHGV-2125194_16	eggNOG-mapper	742738.HMPREF9460_01357	Primase C terminal 2 (PriCT-2)	NA
UHGV-2125194_16	Pfam	PF08707	Primase C terminal 2 (PriCT-2)	PriCT_2
UHGV-2125194_16	Pfam	PF13481	AAA domain	AAA_25
UHGV-2125194_16	COG	COG3598	RecA-family ATPase	NA
UHGV-2125194_16	Structural annotation	PF13481, PF16793, PF08220, MF_00350, MF_00700, NF006606, NF001641, COG3598, COG3285	NA	NA
UHGV-2125194_17	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-2125194_17	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2125194_17	UniRef90	UniRef90_UPI00122CFAB3	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-2125194_17	eggNOG-mapper	478749.BRYFOR_07588	endodeoxyribonuclease RusA	NA
UHGV-2125194_17	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-2125194_17	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-2125194_17	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-2125194_18	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2125194_18	UniRef90	UniRef90_A0A6N7TNN9	NA	NA
UHGV-2125194_18	eggNOG-mapper	748224.HMPREF9436_01463	NA	NA
UHGV-2125194_18	Structural annotation	PF04545, MF_00674, NF009180, COG1342	NA	NA
UHGV-2125194_19	PHROG	phrog_2412	NA	unknown function
UHGV-2125194_19	eggNOG-mapper	742738.HMPREF9460_02504	NA	NA
UHGV-2125194_20	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2125194_20	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-2125194_20	UniRef90	UniRef90_A0A844EGH8	PBSX family phage terminase large subunit	NA
UHGV-2125194_20	eggNOG-mapper	1449050.JNLE01000003_gene3895	phage terminase, large subunit, PBSX family	NA
UHGV-2125194_20	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-2125194_20	COG	COG1783	Phage terminase large subunit	NA
UHGV-2125194_20	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-2125194_21	PHROG	phrog_533	portal protein	head and packaging
UHGV-2125194_21	UniRef90	UniRef90_A0A7G9WF85	Phage portal protein	NA
UHGV-2125194_21	eggNOG-mapper	718252.FP2_06700	NA	NA
UHGV-2125194_21	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-2125194_22	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2125194_22	UniRef90	UniRef90_UPI00122C2EE8	phage minor capsid protein	NA
UHGV-2125194_22	eggNOG-mapper	718252.FP2_06690	NA	NA
UHGV-2125194_22	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2125194_22	COG	COG2369	NA	NA
UHGV-2125194_22	Structural annotation	PF06152	NA	NA
UHGV-2125194_23	Structural annotation	PF10827	NA	NA
UHGV-2125194_24	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-2125194_24	UniRef90	UniRef90_D4K444	Phage minor structural protein GP20	NA
UHGV-2125194_24	eggNOG-mapper	748224.HMPREF9436_03336	Phage minor structural protein GP20	NA
UHGV-2125194_24	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-2125194_24	Structural annotation	PF06810	NA	NA
UHGV-2125194_25	PHROG	phrog_267	major head protein	head and packaging
UHGV-2125194_25	UniRef90	UniRef90_A0A0D8J2H9	p22 coat protein 5	NA
UHGV-2125194_25	eggNOG-mapper	718252.FP2_06660	NA	NA
UHGV-2125194_25	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-2125194_26	PHROG	phrog_541	head-tail adaptor	connector
UHGV-2125194_27	PHROG	phrog_3366	NA	unknown function
UHGV-2125194_27	Structural annotation	PF20536	NA	NA
UHGV-2125194_28	PHROG	phrog_556	minor head protein	head and packaging
UHGV-2125194_28	UniRef90	UniRef90_UPI0016528549	minor capsid protein	NA
UHGV-2125194_28	eggNOG-mapper	718252.FP2_06630	Minor capsid protein	NA
UHGV-2125194_28	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-2125194_28	Structural annotation	PF11114	NA	NA
UHGV-2125194_29	PHROG	phrog_3266	tail completion	connector
UHGV-2125194_29	eggNOG-mapper	718252.FP2_06620	NA	NA
UHGV-2125194_29	Structural annotation	PF12691	NA	NA
UHGV-2125194_30	PHROG	phrog_820	major tail protein	tail
UHGV-2125194_30	eggNOG-mapper	718252.FP2_06610	NA	NA
UHGV-2125194_30	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-2125194_31	PHROG	phrog_4450	NA	unknown function
UHGV-2125194_31	Structural annotation	PF20378	NA	NA
UHGV-2125194_32	PHROG	phrog_706	NA	unknown function
UHGV-2125194_32	UniRef90	UniRef90_D4K437	Bacteriophage Gp15 protein	NA
UHGV-2125194_32	eggNOG-mapper	718252.FP2_06590	Bacteriophage Gp15 protein	NA
UHGV-2125194_32	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-2125194_32	Structural annotation	PF06854	NA	NA
UHGV-2125194_33	PHROG	phrog_28775	tail length tape measure protein	tail
UHGV-2125194_33	UniRef90	UniRef90_UPI00030AC5DB	tape measure protein	NA
UHGV-2125194_33	eggNOG-mapper	748224.HMPREF9436_03326	Phage tail tape measure protein, TP901 family	NA
UHGV-2125194_33	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-2125194_33	COG	COG5283	Phage-related tail protein	NA
UHGV-2125194_33	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-2125194_34	PHROG	phrog_36410	NA	unknown function
UHGV-2125194_34	UniRef90	UniRef90_UPI00130E98E0	phage tail family protein	NA
UHGV-2125194_34	eggNOG-mapper	748224.HMPREF9436_03325	Phage tail protein	NA
UHGV-2125194_34	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-2125194_35	PHROG	phrog_538	minor tail protein	tail
UHGV-2125194_35	UniRef90	UniRef90_UPI0011064D4D	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-2125194_35	eggNOG-mapper	748224.HMPREF9436_03324	NA	NA
UHGV-2125194_35	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-2125194_35	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-2125194_36	PHROG	phrog_9534	head protein	head and packaging
UHGV-2125194_36	eggNOG-mapper	748224.HMPREF9436_03323	COG NOG18825 non supervised orthologous group	NA
UHGV-2125194_36	Structural annotation	PF21567	NA	NA
UHGV-2125194_37	UniRef90	UniRef90_UPI0018835F0C	collagen-like protein	NA
UHGV-2125194_37	eggNOG-mapper	411483.FAEPRAA2165_00757	NA	NA
UHGV-2125194_37	Structural annotation	PF10651	NA	NA
UHGV-2125194_41	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-2125194_41	PHROG	phrog_894	endolysin	lysis
UHGV-2125194_41	UniRef90	UniRef90_A0A3E2U540	NA	NA
UHGV-2125194_41	eggNOG-mapper	718252.FP2_05470	Peptidase M15A	NA
UHGV-2125194_41	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-2125194_41	COG	COG3108	NA	NA
UHGV-2125194_41	Structural annotation	PF05951, COG3108	NA	NA
UHGV-2125194_42	PHROG	phrog_4105	NA	unknown function
UHGV-2125194_42	eggNOG-mapper	718252.FP2_06480	NA	NA
UHGV-2125194_43	PHROG	phrog_263	holin	lysis
UHGV-2125194_43	UniRef90	UniRef90_A0A564SW15	Phage lysis protein, holin	NA
UHGV-2125194_43	eggNOG-mapper	718252.FP2_06470	SPP1 phage holin	NA
UHGV-2125194_43	Pfam	PF04688	SPP1 phage holin	Holin_SPP1
UHGV-2125194_43	NCBIFam	TIGR01592.1	phage holin	NA
UHGV-2125194_43	Structural annotation	PF04688, TIGR01592	NA	NA