UHGV-2125224

Genome information

Genome length 45,966 bps

CDS count 64

Completeness 99.90% (high-quality)

geNomad score 0.9743

Prediction confidence Confident

Genome information
Genome ID	UHGV-2125224
vOTU ID	vOTU-010358
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029620\|Ga0245130_100102\|provirus_24365_70330
BioSample	SAMEA3449182
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	23
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9743
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	47.21
Jumbo phage	No

Genome content
Genome length	45,966 bps
GC content	37.13%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	64
CDS density	92.20%
Average CDS length	666.70 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2125224_1	PHROG	phrog_4980	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
UHGV-2125224_1	eggNOG-mapper	1123075.AUDP01000020_gene1514	Host cell surface-exposed lipoprotein	NA
UHGV-2125224_1	Pfam	PF07553	Host cell surface-exposed lipoprotein	Lipoprotein_Ltp
UHGV-2125224_1	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-2125224_2	eggNOG-mapper	411902.CLOBOL_03862	COG NOG16320 non supervised orthologous group	NA
UHGV-2125224_2	COG	COG1705	Flagellum-specific peptidoglycan hydrolase FlgJ	NA
UHGV-2125224_3	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2125224_3	eggNOG-mapper	1449050.JNLE01000003_gene3892	Phage minor capsid protein 2	NA
UHGV-2125224_3	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2125224_3	COG	COG2369	NA	NA
UHGV-2125224_5	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2125224_5	UniRef90	UniRef90_UPI001593C099	minor capsid protein	NA
UHGV-2125224_5	eggNOG-mapper	1449050.JNLE01000003_gene3892	Phage minor capsid protein 2	NA
UHGV-2125224_5	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2125224_5	COG	COG2369	NA	NA
UHGV-2125224_6	PHROG	phrog_533	portal protein	head and packaging
UHGV-2125224_6	UniRef90	UniRef90_A0A3E2UZW6	Phage portal protein (Fragment)	NA
UHGV-2125224_6	eggNOG-mapper	411461.DORFOR_00749	COG NOG25118 non supervised orthologous group	NA
UHGV-2125224_8	UniRef90	UniRef90_UPI001D0090A6	NA	NA
UHGV-2125224_8	eggNOG-mapper	171693.BN988_01635	NA	NA
UHGV-2125224_8	Pfam	PF05339	NA	DUF739
UHGV-2125224_8	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-2125224_8	Structural annotation	PF05339, NF002773, COG1476	NA	NA
UHGV-2125224_9	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2125224_9	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-2125224_9	UniRef90	UniRef90_A0A6N7Y5A0	DNA-binding protein	NA
UHGV-2125224_9	eggNOG-mapper	457412.RSAG_00795	sequence-specific DNA binding	NA
UHGV-2125224_9	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2125224_9	Structural annotation	PF01381, NF007257, COG1396	NA	NA
UHGV-2125224_10	PHROG	phrog_87	metallo-protease	other
UHGV-2125224_10	UniRef90	UniRef90_A0A3R6AQ03	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-2125224_10	eggNOG-mapper	397288.C806_00132	Zn peptidase	NA
UHGV-2125224_10	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-2125224_10	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-2125224_10	Structural annotation	PF06114, COG2856	NA	NA
UHGV-2125224_11	Pfam	PF04434	SWIM zinc finger	SWIM
UHGV-2125224_12	eggNOG-mapper	658655.HMPREF0988_00902	NA	NA
UHGV-2125224_13	PHROG	phrog_2158	abortive infection resistance protein	moron, auxiliary metabolic gene and host takeover
UHGV-2125224_13	UniRef90	UniRef90_B0MB90	Abi-like protein	NA
UHGV-2125224_13	eggNOG-mapper	411490.ANACAC_00817	Abi-like protein	NA
UHGV-2125224_13	PADLOC	AbiD	AbiD	Abi
UHGV-2125224_13	Pfam	PF07751	Abi-like protein	Abi_2
UHGV-2125224_13	COG	COG4823	Abortive infection bacteriophage resistance protein	NA
UHGV-2125224_13	Structural annotation	PF07751, COG4823	NA	NA
UHGV-2125224_14	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-2125224_14	PHROG	phrog_95	integrase	integration and excision
UHGV-2125224_14	UniRef90	UniRef90_UPI001C0F7357	recombinase family protein	NA
UHGV-2125224_14	eggNOG-mapper	1256908.HMPREF0373_00206	Resolvase, N terminal domain	NA
UHGV-2125224_14	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-2125224_14	Pfam	PF07508	Recombinase	Recombinase
UHGV-2125224_14	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-2125224_14	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-2125224_16	KOfam	K07273	acm; lysozyme	NA
UHGV-2125224_16	PHROG	phrog_291	endolysin	lysis
UHGV-2125224_16	UniRef90	UniRef90_A0A356C4L5	LysM domain-containing protein	NA
UHGV-2125224_16	eggNOG-mapper	515620.EUBELI_01316	Glycoside Hydrolase Family 25-like lysozyme endolysin	NA
UHGV-2125224_16	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-2125224_16	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-2125224_16	Structural annotation	PF01183, NF007404, COG3757	NA	NA
UHGV-2125224_17	PHROG	phrog_199	holin	lysis
UHGV-2125224_17	UniRef90	UniRef90_A0A356C4Q2	Holin	NA
UHGV-2125224_17	eggNOG-mapper	483218.BACPEC_01140	Bacteriophage holin family	NA
UHGV-2125224_17	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-2125224_17	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-2125224_17	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-2125224_17	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-2125224_19	PHROG	phrog_6616	tail protein	tail
UHGV-2125224_19	UniRef90	UniRef90_A0A356C4L7	Peptidase S74 domain-containing protein	NA
UHGV-2125224_19	eggNOG-mapper	1294142.CINTURNW_1706	Phage minor structural protein	NA
UHGV-2125224_19	COG	COG4926	Phage-related protein	NA
UHGV-2125224_19	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-2125224_20	PHROG	phrog_1401	NA	unknown function
UHGV-2125224_20	UniRef90	UniRef90_UPI0007099B7A	NA	NA
UHGV-2125224_20	eggNOG-mapper	1294142.CINTURNW_1705	NA	NA
UHGV-2125224_20	Structural annotation	PF07761	NA	NA
UHGV-2125224_21	PHROG	phrog_1194	NA	unknown function
UHGV-2125224_21	eggNOG-mapper	33035.JPJF01000093_gene2242	NA	NA
UHGV-2125224_21	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-2125224_22	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-2125224_22	UniRef90	UniRef90_R6TDK7	Phage-related protein-like protein	NA
UHGV-2125224_22	eggNOG-mapper	33035.JPJF01000093_gene2243	phage tail tape measure protein	NA
UHGV-2125224_22	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-2125224_22	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-2125224_23	PHROG	phrog_8355	NA	unknown function
UHGV-2125224_23	UniRef90	UniRef90_UPI0006BBA9AA	Gp15 family bacteriophage protein	NA
UHGV-2125224_23	eggNOG-mapper	394503.Ccel_3036	Bacteriophage Gp15 protein	NA
UHGV-2125224_23	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-2125224_23	Structural annotation	PF06854	NA	NA
UHGV-2125224_24	PHROG	phrog_8300	NA	unknown function
UHGV-2125224_24	eggNOG-mapper	1151292.QEW_2425	NA	NA
UHGV-2125224_24	Structural annotation	PF06896	NA	NA
UHGV-2125224_25	PHROG	phrog_820	major tail protein	tail
UHGV-2125224_25	UniRef90	UniRef90_T3DDR1	Phage major tail 2 family protein	NA
UHGV-2125224_25	eggNOG-mapper	1151292.QEW_2426	NA	NA
UHGV-2125224_25	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-2125224_26	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-2125224_26	UniRef90	UniRef90_UPI001D068DAC	minor capsid protein	NA
UHGV-2125224_26	eggNOG-mapper	742740.HMPREF9474_03510	NA	NA
UHGV-2125224_26	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-2125224_26	Structural annotation	PF12691, COG5003	NA	NA
UHGV-2125224_27	PHROG	phrog_556	minor head protein	head and packaging
UHGV-2125224_27	eggNOG-mapper	742740.HMPREF9474_03509	NA	NA
UHGV-2125224_28	PHROG	phrog_8710	NA	unknown function
UHGV-2125224_28	eggNOG-mapper	33035.JPJF01000093_gene2249	NA	NA
UHGV-2125224_28	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-2125224_29	PHROG	phrog_541	head-tail adaptor	connector
UHGV-2125224_29	eggNOG-mapper	1304866.K413DRAFT_0783	NA	NA
UHGV-2125224_31	PHROG	phrog_422	major head protein	head and packaging
UHGV-2125224_31	UniRef90	UniRef90_W0U896	Phage major capsid protein	NA
UHGV-2125224_31	eggNOG-mapper	1121947.AUHK01000002_gene935	NA	NA
UHGV-2125224_31	Structural annotation	PF05065, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-2125224_32	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-2125224_32	eggNOG-mapper	1304866.K413DRAFT_0806	NA	NA
UHGV-2125224_33	PHROG	phrog_872	NA	unknown function
UHGV-2125224_33	UniRef90	UniRef90_A0A413P9Z7	NA	NA
UHGV-2125224_33	eggNOG-mapper	573413.Spirs_2170	NA	NA
UHGV-2125224_33	Pfam	PF11195	NA	DUF2829
UHGV-2125224_33	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-2125224_33	Structural annotation	PF11195	NA	NA
UHGV-2125224_35	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2125224_35	UniRef90	UniRef90_A0A413YU28	Minor capsid protein	NA
UHGV-2125224_35	eggNOG-mapper	1282664.H354_06636	Phage minor capsid protein 2	NA
UHGV-2125224_35	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2125224_35	Structural annotation	PF06152	NA	NA
UHGV-2125224_36	PHROG	phrog_533	portal protein	head and packaging
UHGV-2125224_36	UniRef90	UniRef90_A0A413YU90	Phage portal protein	NA
UHGV-2125224_36	eggNOG-mapper	33035.JPJF01000093_gene2257	NA	NA
UHGV-2125224_36	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-2125224_37	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2125224_37	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-2125224_37	UniRef90	UniRef90_A0A413YU24	Terminase	NA
UHGV-2125224_37	eggNOG-mapper	1294142.CINTURNW_1023	Phage terminase, large subunit, PBSX family	NA
UHGV-2125224_37	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-2125224_37	COG	COG1783	Phage terminase large subunit	NA
UHGV-2125224_37	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-2125224_38	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-2125224_38	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-2125224_38	UniRef90	UniRef90_A0A413YU49	Terminase small subunit	NA
UHGV-2125224_38	eggNOG-mapper	1499683.CCFF01000014_gene3916	Terminase small subunit	NA
UHGV-2125224_38	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-2125224_38	COG	COG3728	Phage terminase, small subunit	NA
UHGV-2125224_38	Structural annotation	PF03592, COG3728	NA	NA
UHGV-2125224_39	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2125224_39	eggNOG-mapper	397290.C810_01391	NA	NA
UHGV-2125224_39	Structural annotation	PF02996	NA	NA
UHGV-2125224_40	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2125224_42	PHROG	phrog_874	NA	unknown function
UHGV-2125224_42	UniRef90	UniRef90_A0A6N7W7Q7	ASCH domain-containing protein	NA
UHGV-2125224_42	eggNOG-mapper	411468.CLOSCI_00298	NA	NA
UHGV-2125224_42	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-2125224_43	PHROG	phrog_20593	NA	unknown function
UHGV-2125224_43	AcrCatalog	cluster_27421	NA	NA
UHGV-2125224_44	PHROG	phrog_10714	NA	unknown function
UHGV-2125224_44	eggNOG-mapper	537007.BLAHAN_05460	NA	NA
UHGV-2125224_45	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-2125224_45	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2125224_45	UniRef90	UniRef90_R5ZJF1	HNH endonuclease	NA
UHGV-2125224_45	eggNOG-mapper	610130.Closa_0730	HNH endonuclease	NA
UHGV-2125224_45	Pfam	PF01844	HNH endonuclease	HNH
UHGV-2125224_45	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2125224_46	UniRef90	UniRef90_UPI001D072F7E	NA	NA
UHGV-2125224_46	eggNOG-mapper	1235790.C805_00035	NA	NA
UHGV-2125224_49	PHROG	phrog_15077	NA	unknown function
UHGV-2125224_49	UniRef90	UniRef90_A0A3A6HZA9	NA	NA
UHGV-2125224_49	eggNOG-mapper	1280698.AUJS01000007_gene1019	NA	NA
UHGV-2125224_49	Structural annotation	PF11300, NF038070	NA	NA
UHGV-2125224_50	PHROG	phrog_8470	NA	unknown function
UHGV-2125224_50	UniRef90	UniRef90_UPI0018999714	PcfJ domain-containing protein	NA
UHGV-2125224_50	eggNOG-mapper	742733.HMPREF9469_00219	PcfJ-like protein	NA
UHGV-2125224_50	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-2125224_50	Structural annotation	PF14284	NA	NA
UHGV-2125224_51	PHROG	phrog_4433	NA	unknown function
UHGV-2125224_51	eggNOG-mapper	1235792.C808_01138	regulation of DNA-templated transcription, elongation	NA
UHGV-2125224_51	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-2125224_51	Structural annotation	PF12120, NF000318	NA	NA
UHGV-2125224_52	eggNOG-mapper	1280698.AUJS01000007_gene1016	NA	NA
UHGV-2125224_53	PHROG	phrog_7566	NA	unknown function
UHGV-2125224_53	eggNOG-mapper	97139.C824_05985	NA	NA
UHGV-2125224_54	Structural annotation	PF19962, NF011863	NA	NA
UHGV-2125224_55	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-2125224_55	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-2125224_55	UniRef90	UniRef90_A0A413YU26	RNase H type-1 domain-containing protein	NA
UHGV-2125224_55	eggNOG-mapper	1121447.JONL01000002_gene2134	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	NA
UHGV-2125224_55	Pfam	PF00075	RNase H	RNase_H
UHGV-2125224_55	COG	COG0328	Ribonuclease HI	NA
UHGV-2125224_55	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-2125224_56	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2125224_56	UniRef90	UniRef90_A0A4P8IFK4	NA	NA
UHGV-2125224_56	eggNOG-mapper	742741.HMPREF9475_00404	NA	NA
UHGV-2125224_56	Structural annotation	PF21578	NA	NA
UHGV-2125224_58	UniRef90	UniRef90_A0A413YU34	XRE family transcriptional regulator	NA
UHGV-2125224_58	eggNOG-mapper	706433.HMPREF9430_01294	Helix-turn-helix XRE-family like proteins	NA
UHGV-2125224_58	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2125224_58	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-2125224_59	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-2125224_59	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2125224_59	UniRef90	UniRef90_A0A413YU20	Helix-turn-helix domain-containing protein	NA
UHGV-2125224_59	eggNOG-mapper	553973.CLOHYLEM_07297	Transcriptional	NA
UHGV-2125224_59	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-2125224_59	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2125224_59	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-2125224_59	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-2125224_60	PHROG	phrog_20936	NA	unknown function
UHGV-2125224_60	UniRef90	UniRef90_UPI0013E038FD	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-2125224_60	Structural annotation	PF06114	NA	NA
UHGV-2125224_61	UniRef90	UniRef90_UPI001C10185D	phage minor capsid protein	NA
UHGV-2125224_61	eggNOG-mapper	1123263.AUKY01000072_gene2115	NA	NA
UHGV-2125224_61	Structural annotation	PF13424, TIGR01641	NA	NA
UHGV-2125224_62	Pfam	PF04434	SWIM zinc finger	SWIM
UHGV-2125224_63	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-2125224_63	PHROG	phrog_95	integrase	integration and excision
UHGV-2125224_63	UniRef90	UniRef90_A0A413YU13	Recombinase family protein	NA
UHGV-2125224_63	eggNOG-mapper	411462.DORLON_00823	Resolvase, N terminal domain	NA
UHGV-2125224_63	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-2125224_63	Pfam	PF07508	Recombinase	Recombinase
UHGV-2125224_63	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-2125224_63	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-2125224_63	Structural annotation	PF00239, PF07508, PF13408, NF041201, COG1961	NA	NA