UHGV-2125598

Genome information

Genome length 35,930 bps

CDS count 54

Completeness 99.90% (high-quality)

geNomad score 0.9806

Prediction confidence Confident

Genome information
Genome ID	UHGV-2125598
vOTU ID	vOTU-008699
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029617\|Ga0245125_100100\|provirus_79137_115066
BioSample	SAMEA3449177
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9806
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	31.57
Jumbo phage	No

Genome content
Genome length	35,930 bps
GC content	45.09%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	54
CDS density	96.03%
Average CDS length	644.94 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2125598_1	KOfam	K07273	acm; lysozyme	NA
UHGV-2125598_1	PHROG	phrog_291	endolysin	lysis
UHGV-2125598_1	UniRef90	UniRef90_A0A1Q6MG54	Lyzozyme M1 (1,4-beta-N-acetylmuramidase)	NA
UHGV-2125598_1	eggNOG-mapper	411474.COPEUT_02639	hydrolase, family 25	NA
UHGV-2125598_1	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-2125598_1	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-2125598_1	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-2125598_1	Structural annotation	PF01183, PF01476, TIGR02899, COG3757, COG1388	NA	NA
UHGV-2125598_2	PHROG	phrog_18218	NA	unknown function
UHGV-2125598_2	UniRef90	UniRef90_A0A374AVT4	Ribonuclease	NA
UHGV-2125598_2	eggNOG-mapper	411474.COPEUT_02638	NA	NA
UHGV-2125598_2	Structural annotation	PF06946	NA	NA
UHGV-2125598_3	PHROG	phrog_1009	NA	unknown function
UHGV-2125598_3	UniRef90	UniRef90_A0A1Q6MFX3	Branched-chain amino acid ABC transporter permease	NA
UHGV-2125598_3	eggNOG-mapper	742765.HMPREF9457_03364	NA	NA
UHGV-2125598_5	eggNOG-mapper	657322.FPR_22010	NA	NA
UHGV-2125598_6	PHROG	phrog_9994	NA	unknown function
UHGV-2125598_6	UniRef90	UniRef90_A0A173RZM4	Phage-related holin (Lysis protein)	NA
UHGV-2125598_6	eggNOG-mapper	1121866.AUGK01000014_gene2043	tail collar domain protein	NA
UHGV-2125598_6	COG	COG4675	Phage tail collar domain	NA
UHGV-2125598_6	Structural annotation	PF20747	NA	NA
UHGV-2125598_7	PHROG	phrog_538	minor tail protein	tail
UHGV-2125598_7	UniRef90	UniRef90_W0FH81	Phage head fiber protein	NA
UHGV-2125598_7	eggNOG-mapper	1256908.HMPREF0373_00466	NA	NA
UHGV-2125598_7	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-2125598_8	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-2125598_8	UniRef90	UniRef90_UPI0015709E93	phage tail protein	NA
UHGV-2125598_8	eggNOG-mapper	411461.DORFOR_01176	NA	NA
UHGV-2125598_8	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-2125598_9	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-2125598_9	UniRef90	UniRef90_A0A1Q6MG21	PhageMin_Tail domain-containing protein	NA
UHGV-2125598_9	eggNOG-mapper	908340.HMPREF9406_2570	Phage tail tape measure protein TP901	NA
UHGV-2125598_9	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-2125598_9	COG	COG5280	Phage-related minor tail protein	NA
UHGV-2125598_9	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-2125598_11	UniRef90	UniRef90_A0A374TPV8	Phage tail protein	NA
UHGV-2125598_11	eggNOG-mapper	1384484.AEQU_1175	NA	NA
UHGV-2125598_11	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-2125598_12	PHROG	phrog_5509	neck protein	connector
UHGV-2125598_12	UniRef90	UniRef90_W0FMR6	Gp9 protein	NA
UHGV-2125598_12	eggNOG-mapper	1347392.CCEZ01000045_gene11	NA	NA
UHGV-2125598_12	Structural annotation	TIGR01725	NA	NA
UHGV-2125598_13	eggNOG-mapper	1384484.AEQU_1177	NA	NA
UHGV-2125598_13	Structural annotation	PF05657, COG3167	NA	NA
UHGV-2125598_14	PHROG	phrog_5635	head-tail adaptor	connector
UHGV-2125598_14	UniRef90	UniRef90_UPI0011070497	phage head closure protein	NA
UHGV-2125598_14	eggNOG-mapper	1220589.CD32_01710	NA	NA
UHGV-2125598_14	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-2125598_15	PHROG	phrog_749	NA	unknown function
UHGV-2125598_15	UniRef90	UniRef90_W0FM58	Gp6 protein	NA
UHGV-2125598_15	eggNOG-mapper	349161.Dred_2603	NA	NA
UHGV-2125598_16	PHROG	phrog_10	major head protein	head and packaging
UHGV-2125598_16	UniRef90	UniRef90_W0FH89	MAjor capsid protein a	NA
UHGV-2125598_16	eggNOG-mapper	1384484.AEQU_1180	Phage capsid family	NA
UHGV-2125598_16	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2125598_16	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2125598_16	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2125598_16	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2125598_17	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-2125598_17	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-2125598_17	UniRef90	UniRef90_A0A1Q6MG19	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-2125598_17	eggNOG-mapper	1232452.BAIB02000007_gene1626	Belongs to the peptidase S14 family	NA
UHGV-2125598_17	Pfam	PF00574	Clp protease	CLP_protease
UHGV-2125598_17	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-2125598_17	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-2125598_18	PHROG	phrog_12	portal protein	head and packaging
UHGV-2125598_18	UniRef90	UniRef90_A0A1Q6MFZ4	Phage portal protein	NA
UHGV-2125598_18	eggNOG-mapper	349161.Dred_2606	Phage portal protein, HK97 family	NA
UHGV-2125598_18	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2125598_18	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-2125598_18	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2125598_18	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-2125598_19	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2125598_19	UniRef90	UniRef90_A0A1Q6MG31	Terminase	NA
UHGV-2125598_19	eggNOG-mapper	610130.Closa_0741	Phage Terminase	NA
UHGV-2125598_19	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-2125598_19	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2125598_19	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2125598_19	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-2125598_20	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-2125598_20	UniRef90	UniRef90_A0A4U7JDP0	P27 family phage terminase small subunit	NA
UHGV-2125598_20	eggNOG-mapper	86416.Clopa_0336	NA	NA
UHGV-2125598_20	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-2125598_20	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-2125598_21	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-2125598_21	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2125598_21	UniRef90	UniRef90_A0A1Q6MG73	HNH domain-containing protein	NA
UHGV-2125598_21	eggNOG-mapper	768710.DesyoDRAFT_1275	HNH nucleases	NA
UHGV-2125598_21	Pfam	PF01844	HNH endonuclease	HNH
UHGV-2125598_21	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2125598_22	PHROG	phrog_11237	NA	unknown function
UHGV-2125598_22	eggNOG-mapper	1235798.C817_04578	NA	NA
UHGV-2125598_25	PHROG	phrog_625	NA	unknown function
UHGV-2125598_25	UniRef90	UniRef90_A0A373D1H8	ASCH domain-containing protein	NA
UHGV-2125598_25	eggNOG-mapper	397290.C810_01502	NA	NA
UHGV-2125598_25	Structural annotation	PF12961, COG2028	NA	NA
UHGV-2125598_26	Structural annotation	PF02452, NF010262, COG2337	NA	NA
UHGV-2125598_27	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-2125598_27	UniRef90	UniRef90_A0A3D5LSK2	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-2125598_27	eggNOG-mapper	1321782.HMPREF1986_02257	NA	NA
UHGV-2125598_27	Pfam	PF14359	NA	DUF4406
UHGV-2125598_27	Structural annotation	PF14359, MF_03036, TIGR02133, COG3613	NA	NA
UHGV-2125598_28	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-2125598_28	PHROG	phrog_1	integrase	integration and excision
UHGV-2125598_28	UniRef90	UniRef90_A0A6L5YHS5	Tyrosine-type recombinase/integrase	NA
UHGV-2125598_28	eggNOG-mapper	1161413.HMPREF1510_0782	Belongs to the 'phage' integrase family	NA
UHGV-2125598_28	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-2125598_28	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2125598_28	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-2125598_28	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-2125598_29	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-2125598_29	PHROG	phrog_5696	NA	unknown function
UHGV-2125598_29	UniRef90	UniRef90_A0A1Q6MG41	N6_Mtase domain-containing protein	NA
UHGV-2125598_29	eggNOG-mapper	1235457.C404_25710	N-6 DNA Methylase	NA
UHGV-2125598_29	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-2125598_29	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-2125598_29	Structural annotation	COG0286	NA	NA
UHGV-2125598_30	PHROG	phrog_7566	NA	unknown function
UHGV-2125598_30	eggNOG-mapper	411459.RUMOBE_00948	NA	NA
UHGV-2125598_31	eggNOG-mapper	411468.CLOSCI_00555	NA	NA
UHGV-2125598_32	eggNOG-mapper	411468.CLOSCI_00572	NA	NA
UHGV-2125598_34	Structural annotation	PF06257, TIGR00739, COG4466	NA	NA
UHGV-2125598_35	PHROG	phrog_15077	NA	unknown function
UHGV-2125598_35	UniRef90	UniRef90_A5ZPN2	NA	NA
UHGV-2125598_35	eggNOG-mapper	97139.C824_05986	NA	NA
UHGV-2125598_35	Structural annotation	PF11300, NF033725	NA	NA
UHGV-2125598_36	PHROG	phrog_8470	NA	unknown function
UHGV-2125598_36	UniRef90	UniRef90_UPI001D086F83	PcfJ domain-containing protein	NA
UHGV-2125598_36	eggNOG-mapper	1235792.C808_00066	PcfJ-like protein	NA
UHGV-2125598_36	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-2125598_36	Structural annotation	PF14284	NA	NA
UHGV-2125598_37	eggNOG-mapper	1235792.C808_00065	NA	NA
UHGV-2125598_38	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-2125598_38	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-2125598_38	UniRef90	UniRef90_A0A1Q6MG39	RNase H type-1 domain-containing protein	NA
UHGV-2125598_38	eggNOG-mapper	641147.HMPREF9021_01060	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	NA
UHGV-2125598_38	Pfam	PF00075	RNase H	RNase_H
UHGV-2125598_38	COG	COG0328	Ribonuclease HI	NA
UHGV-2125598_39	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2125598_39	eggNOG-mapper	411459.RUMOBE_00953	NA	NA
UHGV-2125598_39	Structural annotation	PF21578, NF041486	NA	NA
UHGV-2125598_40	PHROG	phrog_20014	NA	unknown function
UHGV-2125598_40	eggNOG-mapper	1235798.C817_02590	NA	NA
UHGV-2125598_42	PHROG	phrog_6058	NA	unknown function
UHGV-2125598_42	UniRef90	UniRef90_A0A1I2TJF0	Helix-turn-helix domain-containing protein	NA
UHGV-2125598_42	eggNOG-mapper	742823.HMPREF9465_00186	NA	NA
UHGV-2125598_42	Structural annotation	PF12728, NF033787	NA	NA
UHGV-2125598_43	PHROG	phrog_3886	NA	unknown function
UHGV-2125598_43	eggNOG-mapper	742740.HMPREF9474_02292	NA	NA
UHGV-2125598_44	KOfam	K03744	lemA; LemA protein	NA
UHGV-2125598_44	PHROG	phrog_1383	virion structural protein	head and packaging
UHGV-2125598_44	UniRef90	UniRef90_A0A1Q6MG17	LemA family protein	NA
UHGV-2125598_44	eggNOG-mapper	742735.HMPREF9467_00879	LemA family	NA
UHGV-2125598_44	Pfam	PF04011	LemA family	LemA
UHGV-2125598_44	COG	COG1704	Magnetosome formation protein MamQ, lipoprotein antigen LemA family	NA
UHGV-2125598_44	Structural annotation	PF04011, NF040966, COG1704	NA	NA
UHGV-2125598_48	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-2125598_48	PHROG	phrog_5823	transcriptional regulator	transcription regulation
UHGV-2125598_48	UniRef90	UniRef90_A0A822LL88	Toxin-antitoxin system antitoxin component Xre family	NA
UHGV-2125598_48	eggNOG-mapper	568703.LGG_00374	DNA-binding helix-turn-helix protein	NA
UHGV-2125598_48	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-2125598_48	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2125598_48	COG	COG3620	Predicted transcriptional regulator, contains an XRE-type HTH domain (archaeal members contain CBS pair)	NA
UHGV-2125598_48	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-2125598_49	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-2125598_49	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-2125598_49	UniRef90	UniRef90_A0A1Q6MG49	HTH cro/C1-type domain-containing protein	NA
UHGV-2125598_49	eggNOG-mapper	706434.HMPREF9429_00405	Peptidase S24-like	NA
UHGV-2125598_49	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2125598_49	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-2125598_49	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-2125598_49	Structural annotation	PF01381, PF00717, MF_00015, NF041951, COG1396	NA	NA
UHGV-2125598_50	PHROG	phrog_8043	NA	unknown function
UHGV-2125598_50	UniRef90	UniRef90_A0A1Q6MG25	HIRAN domain-containing protein	NA
UHGV-2125598_50	eggNOG-mapper	1336234.JAGN01000004_gene559	HIRAN domain	NA
UHGV-2125598_50	Pfam	PF08797	HIRAN domain	HIRAN
UHGV-2125598_52	KOfam	K07339	hicA; mRNA interferase HicA [EC:3.1.-.-]	NA
UHGV-2125598_52	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-2125598_52	UniRef90	UniRef90_A0A3R6X664	Addiction module toxin, HicA family	NA
UHGV-2125598_52	eggNOG-mapper	1408311.JNJM01000002_gene1308	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-2125598_52	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-2125598_52	COG	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-2125598_52	Structural annotation	PF07927, COG1724	NA	NA
UHGV-2125598_53	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-2125598_53	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-2125598_53	UniRef90	UniRef90_A0A1Q6MG32	HicB family protein	NA
UHGV-2125598_53	eggNOG-mapper	397287.C807_02051	HicB_like antitoxin of bacterial toxin-antitoxin system	NA
UHGV-2125598_53	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-2125598_53	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-2125598_53	Structural annotation	PF15919, COG1598	NA	NA
UHGV-2125598_54	KOfam	K14059	int; integrase	NA
UHGV-2125598_54	PHROG	phrog_1	integrase	integration and excision
UHGV-2125598_54	UniRef90	UniRef90_A0A1Q6MGA4	Site-specific integrase	NA
UHGV-2125598_54	eggNOG-mapper	742741.HMPREF9475_00397	Phage integrase family	NA
UHGV-2125598_54	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2125598_54	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2125598_54	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA