UHGV-2125740

Genome information

vOTU vOTU-042004

Genome length 26,701 bps

CDS count 33

Completeness 57.37% (medium-quality)

geNomad score 0.9737

Prediction confidence Confident

Genome information
Genome ID	UHGV-2125740
vOTU ID	vOTU-042004
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029711\|Ga0245193_101138\|provirus_4258_30958
BioSample	NA
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	57.37% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9737
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	18.69
Jumbo phage	No

Genome content
Genome length	26,701 bps
GC content	51.20%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	33
CDS density	97.28%
Average CDS length	792.46 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2125740_1	eggNOG-mapper	457412.RSAG_00329	NA	NA
UHGV-2125740_5	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-2125740_5	UniRef90	UniRef90_A0A1W1YQ31	Putative phage-type endonuclease	NA
UHGV-2125740_5	eggNOG-mapper	742765.HMPREF9457_02105	YqaJ viral recombinase family	NA
UHGV-2125740_5	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-2125740_5	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-2125740_5	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-2125740_5	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-2125740_6	PHROG	phrog_674	NA	unknown function
UHGV-2125740_6	UniRef90	UniRef90_A0A4P9C8L7	NA	NA
UHGV-2125740_6	eggNOG-mapper	658655.HMPREF0988_02587	NA	NA
UHGV-2125740_6	Pfam	PF07083	NA	DUF1351
UHGV-2125740_6	Structural annotation	PF07083	NA	NA
UHGV-2125740_7	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-2125740_7	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2125740_7	UniRef90	UniRef90_UPI000F53F699	recombinase RecT	NA
UHGV-2125740_7	eggNOG-mapper	1408437.JNJN01000039_gene372	RecT family	NA
UHGV-2125740_7	Pfam	PF03837	RecT family	RecT
UHGV-2125740_7	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-2125740_7	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-2125740_7	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-2125740_8	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-2125740_8	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2125740_8	UniRef90	UniRef90_A0A350TIB2	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-2125740_8	eggNOG-mapper	1123263.AUKY01000072_gene2102	Endodeoxyribonuclease RusA	NA
UHGV-2125740_8	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-2125740_8	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-2125740_8	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-2125740_9	eggNOG-mapper	742817.HMPREF9449_01803	NA	NA
UHGV-2125740_9	Structural annotation	PF14297, TIGR01714, COG3756	NA	NA
UHGV-2125740_10	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-2125740_10	PHROG	phrog_26861	NA	unknown function
UHGV-2125740_10	UniRef90	UniRef90_A0A3D2K7P5	Single-stranded DNA-binding protein	NA
UHGV-2125740_10	eggNOG-mapper	1128398.Curi_c08360	Single-strand binding protein family	NA
UHGV-2125740_10	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-2125740_10	NCBIFam	NF004476.0	single-stranded DNA-binding protein	NA
UHGV-2125740_10	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2125740_10	Structural annotation	PF00436, PF13567, MF_00984, NF004476, COG0629	NA	NA
UHGV-2125740_11	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-2125740_11	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2125740_11	UniRef90	UniRef90_A0A2V2ET02	Single-stranded DNA-binding protein	NA
UHGV-2125740_11	eggNOG-mapper	1329516.JPST01000014_gene609	Single-strand binding protein family	NA
UHGV-2125740_11	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-2125740_11	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-2125740_11	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2125740_11	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-2125740_11	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-2125740_12	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-2125740_12	UniRef90	UniRef90_UPI0011581F2E	replication terminator protein	NA
UHGV-2125740_12	eggNOG-mapper	562743.JH976434_gene1044	NA	NA
UHGV-2125740_13	PHROG	phrog_1029	NA	unknown function
UHGV-2125740_13	eggNOG-mapper	411483.FAEPRAA2165_01887	NA	NA
UHGV-2125740_14	PHROG	phrog_1029	NA	unknown function
UHGV-2125740_14	UniRef90	UniRef90_A0A4V6L4T1	NA	NA
UHGV-2125740_14	eggNOG-mapper	349161.Dred_1186	NA	NA
UHGV-2125740_16	Structural annotation	PF18195, MF_00257, NF041655, COG1923	NA	NA
UHGV-2125740_17	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-2125740_17	PHROG	phrog_116	DNA methyltransferase	other
UHGV-2125740_17	UniRef90	UniRef90_A0A2Z4GUI8	Site-specific DNA methylase	NA
UHGV-2125740_17	eggNOG-mapper	1519439.JPJG01000060_gene1872	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-2125740_17	PADLOC	MTase_II_00164	Type II methyltransferase	RM
UHGV-2125740_17	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-2125740_17	COG	COG0270	DNA-cytosine methylase	NA
UHGV-2125740_17	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-2125740_18	PHROG	phrog_9298	radical SAM domain protein	other
UHGV-2125740_18	UniRef90	UniRef90_UPI0019113502	radical SAM protein	NA
UHGV-2125740_18	eggNOG-mapper	97138.C820_02863	NA	NA
UHGV-2125740_18	COG	COG1032	Radical SAM superfamily enzyme YgiQ, UPF0313 family	NA
UHGV-2125740_18	Structural annotation	MF_01864, NF010916, COG2516	NA	NA
UHGV-2125740_25	PHROG	phrog_918	NA	unknown function
UHGV-2125740_25	UniRef90	UniRef90_UPI001D020797	NA	NA
UHGV-2125740_25	eggNOG-mapper	357809.Cphy_2966	NA	NA
UHGV-2125740_25	Pfam	PF19791	NA	DUF6275
UHGV-2125740_25	Structural annotation	PF19791	NA	NA
UHGV-2125740_28	PHROG	phrog_3064	terminase	head and packaging
UHGV-2125740_28	UniRef90	UniRef90_A0A2I7QK24	Coil containing protein (Fragment)	NA
UHGV-2125740_29	KOfam	K21523	gp17; terminase, large subunit [EC:3.1.-.-]	NA
UHGV-2125740_29	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-2125740_29	UniRef90	UniRef90_UPI001F401ABC	terminase family protein	NA
UHGV-2125740_29	eggNOG-mapper	696281.Desru_1088	Phage terminase large subunit	NA
UHGV-2125740_29	COG	COG1783	Phage terminase large subunit	NA
UHGV-2125740_29	Structural annotation	PF03354, PF17289, MF_04146, TIGR01547, COG4373	NA	NA
UHGV-2125740_30	PHROG	phrog_156	portal protein	head and packaging
UHGV-2125740_30	eggNOG-mapper	1519439.JPJG01000060_gene1886	NA	NA
UHGV-2125740_30	Structural annotation	PF16510, MF_04120, TIGR01542, COG4695	NA	NA
UHGV-2125740_31	eggNOG-mapper	1961.JOAK01000002_gene907	TIGRFAM YD repeat protein	NA
UHGV-2125740_31	COG	COG3209	NA	NA
UHGV-2125740_33	PHROG	phrog_21376	NA	unknown function
UHGV-2125740_33	eggNOG-mapper	36875.HQ29_02650	acetyltransferase	NA
UHGV-2125740_33	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-2125740_33	Pfam	PF18812	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease3	PBECR3
UHGV-2125740_33	Pfam	PF18760	ADP-Ribosyltransferase in polyvalent proteins	ART-PolyVal
UHGV-2125740_33	Pfam	PF13151	NA	DUF3990
UHGV-2125740_33	COG	COG0454	N-acetyltransferase, GNAT superfamily (includes histone acetyltransferase HPA2)	NA