UHGV-2125808

Genome information

Genome length 34,983 bps

CDS count 52

Completeness 99.66% (high-quality)

geNomad score 0.9636

Prediction confidence Confident

Genome information
Genome ID	UHGV-2125808
vOTU ID	vOTU-014586
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029671\|Ga0245181_100410\|provirus_1_34983
BioSample	NA
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.66% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9636
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	22.14
Jumbo phage	No

Genome content
Genome length	34,983 bps
GC content	57.10%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	92.33%
Average CDS length	624.75 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2125808_2	KOfam	K07079	NA	NA
UHGV-2125808_2	PHROG	phrog_8735	NA	unknown function
UHGV-2125808_2	UniRef90	UniRef90_A0A316PJI0	Aldo/keto reductase	NA
UHGV-2125808_2	eggNOG-mapper	665956.HMPREF1032_00210	PFAM aldo keto reductase	NA
UHGV-2125808_2	Pfam	PF00248	Aldo/keto reductase family	Aldo_ket_red
UHGV-2125808_2	Pfam	PF13534	4Fe-4S dicluster domain	Fer4_17
UHGV-2125808_2	COG	COG1453	Predicted oxidoreductase of the aldo/keto reductase family	NA
UHGV-2125808_2	Structural annotation	PF00248, MF_02227, NF007912, COG1453	NA	NA
UHGV-2125808_4	UniRef90	UniRef90_UPI0004793C89	NA	NA
UHGV-2125808_4	eggNOG-mapper	1280671.AUJH01000008_gene357	NA	NA
UHGV-2125808_5	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-2125808_5	PHROG	phrog_95	integrase	integration and excision
UHGV-2125808_5	UniRef90	UniRef90_A0A3A9I8F7	Recombinase family protein	NA
UHGV-2125808_5	eggNOG-mapper	665956.HMPREF1032_00152	Resolvase, N terminal domain	NA
UHGV-2125808_5	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-2125808_5	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-2125808_5	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-2125808_5	Structural annotation	PF00239, NF041201, COG1961	NA	NA
UHGV-2125808_7	eggNOG-mapper	1262449.CP6013_2082	NA	NA
UHGV-2125808_7	Structural annotation	PF11631, TIGR03066	NA	NA
UHGV-2125808_8	UniRef90	UniRef90_UPI0011227539	Arc family DNA-binding protein	NA
UHGV-2125808_8	eggNOG-mapper	1235793.C809_03874	Arc-like DNA binding domain	NA
UHGV-2125808_9	UniRef90	UniRef90_UPI0018A04FE7	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-2125808_9	eggNOG-mapper	428125.CLOLEP_02739	NA	NA
UHGV-2125808_9	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-2125808_10	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2125808_10	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-2125808_10	UniRef90	UniRef90_A0A316PM85	XRE family transcriptional regulator	NA
UHGV-2125808_10	eggNOG-mapper	411469.EUBHAL_01994	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-2125808_10	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-2125808_10	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-2125808_10	Structural annotation	PF08667, NF041951, COG3655	NA	NA
UHGV-2125808_11	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2125808_11	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-2125808_11	UniRef90	UniRef90_A0A316Q0H9	XRE family transcriptional regulator	NA
UHGV-2125808_11	eggNOG-mapper	411490.ANACAC_00814	Helix-turn-helix XRE-family like proteins	NA
UHGV-2125808_11	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2125808_11	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2125808_11	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-2125808_15	Pfam	PF12957	NA	DUF3846
UHGV-2125808_15	COG	COG4734	Antirestriction protein ArdA	NA
UHGV-2125808_16	PHROG	phrog_1733	NA	unknown function
UHGV-2125808_16	eggNOG-mapper	665956.HMPREF1032_03597	DNA binding	NA
UHGV-2125808_16	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-2125808_16	Structural annotation	PF03677	NA	NA
UHGV-2125808_19	PHROG	phrog_1366	NA	unknown function
UHGV-2125808_19	UniRef90	UniRef90_A0A1I0CM14	AAA domain-containing protein	NA
UHGV-2125808_19	eggNOG-mapper	748224.HMPREF9436_01458	AAA domain	NA
UHGV-2125808_19	Pfam	PF13479	AAA domain	AAA_24
UHGV-2125808_19	COG	COG0468	RecA/RadA recombinase	NA
UHGV-2125808_19	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-2125808_20	Structural annotation	PF03838, MF_00130, TIGR00648, COG3331	NA	NA
UHGV-2125808_21	KOfam	K18959	uvsW; ATP-dependent DNA helicase UvsW [EC:5.6.2.4]	NA
UHGV-2125808_21	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2125808_21	UniRef90	UniRef90_A0A316Q0I4	Helicase ATP-binding domain-containing protein	NA
UHGV-2125808_21	eggNOG-mapper	748224.HMPREF9436_01460	Type III restriction protein res subunit	NA
UHGV-2125808_21	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-2125808_21	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-2125808_21	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-2125808_21	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-2125808_21	Structural annotation	PF04851, PF16203, MF_01489, TIGR00603, COG1061	NA	NA
UHGV-2125808_22	Structural annotation	PF05037	NA	NA
UHGV-2125808_23	KOfam	K06919	K06919; putative DNA primase/helicase	NA
UHGV-2125808_23	PHROG	phrog_1829	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-2125808_23	UniRef90	UniRef90_A0A316PJJ9	DNA primase	NA
UHGV-2125808_23	eggNOG-mapper	748224.HMPREF9436_01462	Phage plasmid primase, P4 family	NA
UHGV-2125808_23	Pfam	PF08706	D5 N terminal like	D5_N
UHGV-2125808_23	Pfam	PF19263	NA	DUF5906
UHGV-2125808_23	Pfam	PF03288	Poxvirus D5 protein-like	Pox_D5
UHGV-2125808_23	NCBIFam	TIGR01613.1	phage/plasmid primase, P4 family	NA
UHGV-2125808_23	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-2125808_23	Structural annotation	PF08706, PF05272, PF02257, MF_04000, NF011296, COG3378, COG4983	NA	NA
UHGV-2125808_24	UniRef90	UniRef90_UPI00155AEB1C	transposase	NA
UHGV-2125808_25	eggNOG-mapper	428125.CLOLEP_01806	NA	NA
UHGV-2125808_25	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-2125808_26	Structural annotation	PF09274, NF008671, COG4710	NA	NA
UHGV-2125808_29	Structural annotation	PF19962	NA	NA
UHGV-2125808_30	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2125808_30	UniRef90	UniRef90_UPI001F1A3C47	terminase large subunit	NA
UHGV-2125808_30	eggNOG-mapper	748224.HMPREF9436_01467	phage terminase, large subunit	NA
UHGV-2125808_30	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2125808_30	Structural annotation	PF20441, PF03354, MF_04146, NF033889, COG4626	NA	NA
UHGV-2125808_31	PHROG	phrog_104	portal protein	head and packaging
UHGV-2125808_31	UniRef90	UniRef90_A0A316PMS0	Phage portal protein	NA
UHGV-2125808_31	eggNOG-mapper	748224.HMPREF9436_01468	Phage portal protein, SPP1 Gp6-like	NA
UHGV-2125808_31	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-2125808_32	PHROG	phrog_193	head maturation protease	head and packaging
UHGV-2125808_32	UniRef90	UniRef90_A0A6N8H118	CdiA_C domain-containing protein	NA
UHGV-2125808_32	eggNOG-mapper	748224.HMPREF9436_01469	NA	NA
UHGV-2125808_32	COG	COG5529	Phage-encoded DNA-binding protein ECs1768, contains HTH and DnaT DNA-binding domains	NA
UHGV-2125808_34	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-2125808_34	UniRef90	UniRef90_UPI00195B7610	phage scaffolding protein	NA
UHGV-2125808_34	eggNOG-mapper	663278.Ethha_0497	NA	NA
UHGV-2125808_34	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-2125808_34	Structural annotation	PF06810	NA	NA
UHGV-2125808_35	PHROG	phrog_10	major head protein	head and packaging
UHGV-2125808_35	UniRef90	UniRef90_A0A1Y4TJU9	Phage major capsid protein	NA
UHGV-2125808_35	eggNOG-mapper	748224.HMPREF9436_00690	Phage capsid family	NA
UHGV-2125808_35	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2125808_35	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2125808_35	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2125808_35	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2125808_37	PHROG	phrog_137	head-tail adaptor Ad1	connector
UHGV-2125808_37	UniRef90	UniRef90_E2ZGA8	Phage protein Gp19/Gp15/Gp42	NA
UHGV-2125808_37	Structural annotation	PF09355	NA	NA
UHGV-2125808_38	PHROG	phrog_501	head closure Hc1	connector
UHGV-2125808_38	eggNOG-mapper	748224.HMPREF9436_00693	NA	NA
UHGV-2125808_38	Structural annotation	PF12206, COG5614	NA	NA
UHGV-2125808_39	PHROG	phrog_387	neck protein	connector
UHGV-2125808_39	UniRef90	UniRef90_A0A139NAV7	Phage-associated protein	NA
UHGV-2125808_39	eggNOG-mapper	908337.HMPREF9257_0534	NA	NA
UHGV-2125808_40	PHROG	phrog_123	tail terminator	connector
UHGV-2125808_40	UniRef90	UniRef90_A0A139NAV0	Phage-associated protein	NA
UHGV-2125808_40	eggNOG-mapper	1321372.AQQB01000060_gene68	NA	NA
UHGV-2125808_40	Structural annotation	PF06141	NA	NA
UHGV-2125808_41	PHROG	phrog_117	major tail protein	tail
UHGV-2125808_41	UniRef90	UniRef90_A0A316PMT1	Phage tail protein	NA
UHGV-2125808_41	eggNOG-mapper	748224.HMPREF9436_00696	domain, Protein	NA
UHGV-2125808_41	COG	COG5492	NA	NA
UHGV-2125808_41	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-2125808_42	PHROG	phrog_1526	NA	unknown function
UHGV-2125808_42	UniRef90	UniRef90_G2SN49	NA	NA
UHGV-2125808_42	eggNOG-mapper	936375.HMPREF1152_0686	NA	NA
UHGV-2125808_43	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-2125808_43	UniRef90	UniRef90_A0A316Q0J4	PblA	NA
UHGV-2125808_43	eggNOG-mapper	1089553.Tph_c23060	lysine exporter protein (LysE YggA)	NA
UHGV-2125808_43	COG	COG5185	Chromosome segregation protein NDC80, interacts with SMC proteins	NA
UHGV-2125808_43	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-2125808_44	PHROG	phrog_36410	NA	unknown function
UHGV-2125808_44	UniRef90	UniRef90_A0A3A6ECR2	Phage tail family protein	NA
UHGV-2125808_44	eggNOG-mapper	665956.HMPREF1032_02941	Phage tail protein	NA
UHGV-2125808_44	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-2125808_45	PHROG	phrog_538	minor tail protein	tail
UHGV-2125808_45	UniRef90	UniRef90_UPI000C7C9115	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-2125808_45	eggNOG-mapper	665956.HMPREF1032_02940	NA	NA
UHGV-2125808_45	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-2125808_45	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-2125808_46	PHROG	phrog_9534	head protein	head and packaging
UHGV-2125808_46	UniRef90	UniRef90_K4Z6J0	Putative phage protein	NA
UHGV-2125808_46	eggNOG-mapper	665956.HMPREF1032_02939	COG NOG18825 non supervised orthologous group	NA
UHGV-2125808_46	Structural annotation	PF20747	NA	NA
UHGV-2125808_47	Structural annotation	PF11514	NA	NA
UHGV-2125808_49	KOfam	K21472	lytH; peptidoglycan LD-endopeptidase LytH [EC:3.4.-.-]	NA
UHGV-2125808_49	UniRef90	UniRef90_G9RT42	Peptidase_M23 domain-containing protein	NA
UHGV-2125808_49	eggNOG-mapper	665956.HMPREF1032_02928	NA	NA
UHGV-2125808_49	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-2125808_49	Structural annotation	PF01551, NF040883, COG0739	NA	NA
UHGV-2125808_50	PHROG	phrog_4105	NA	unknown function
UHGV-2125808_50	eggNOG-mapper	1687.BCOR_0969	NA	NA
UHGV-2125808_51	PHROG	phrog_1129	holin	lysis
UHGV-2125808_51	UniRef90	UniRef90_A0A316PMB0	Enolase	NA
UHGV-2125808_51	eggNOG-mapper	1007096.BAGW01000036_gene2663	Phage holin family Hol44, in holin superfamily V	NA
UHGV-2125808_51	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-2125808_51	Structural annotation	PF06946	NA	NA
UHGV-2125808_52	KOfam	K07699	spo0A; two-component system, response regulator, stage 0 sporulation protein A	NA
UHGV-2125808_52	PHROG	phrog_24603	NA	unknown function
UHGV-2125808_52	UniRef90	UniRef90_A0A316Q0K0	Spo0A_C domain-containing protein	NA
UHGV-2125808_52	eggNOG-mapper	292459.STH1832	May play the central regulatory role in sporulation. It may be an element of the effector pathway responsible for the activation of sporulation genes in response to nutritional stress. Spo0A may act in concert with spo0H (a sigma factor) to control the expression of some genes that are critical to the sporulation process	NA
UHGV-2125808_52	Pfam	PF08769	Sporulation initiation factor Spo0A C terminal	Spo0A_C
UHGV-2125808_52	COG	COG0745	DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain	NA
UHGV-2125808_52	Structural annotation	PF08769, TIGR02875	NA	NA