UHGV-2126118

Genome information

Genome length 42,699 bps

CDS count 42

Completeness 62.66% (medium-quality)

geNomad score 0.9806

Prediction confidence Confident

Genome information
Genome ID	UHGV-2126118
vOTU ID	vOTU-018069
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029714\|Ga0245242_1000210\|provirus_66623_109321
BioSample	SAMEA3449293
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	62.66% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9806
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	15.87
Jumbo phage	No

Genome content
Genome length	42,699 bps
GC content	46.80%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	42
CDS density	94.54%
Average CDS length	963.64 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2126118_1	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-2126118_1	PHROG	phrog_6700	endolysin	lysis
UHGV-2126118_1	UniRef90	UniRef90_A0A1Q6R3Y6	Peptidase_M23 domain-containing protein	NA
UHGV-2126118_1	eggNOG-mapper	626939.HMPREF9443_02107	Peptidase M23	NA
UHGV-2126118_1	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-2126118_1	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-2126118_2	UniRef90	UniRef90_A0A7M1RTM1	RNA polymerase sigma factor/ubiquitin-like protein	NA
UHGV-2126118_2	eggNOG-mapper	1408437.JNJN01000043_gene801	NA	NA
UHGV-2126118_3	Structural annotation	PF18573, NF033147	NA	NA
UHGV-2126118_4	PHROG	phrog_16490	NA	unknown function
UHGV-2126118_4	eggNOG-mapper	445972.ANACOL_01880	NA	NA
UHGV-2126118_5	eggNOG-mapper	476272.RUMHYD_01953	NA	NA
UHGV-2126118_6	PHROG	phrog_21718	NA	unknown function
UHGV-2126118_7	UniRef90	UniRef90_R6WL32	HTH luxR-type domain-containing protein	NA
UHGV-2126118_7	Pfam	PF07638	ECF sigma factor	Sigma70_ECF
UHGV-2126118_9	KOfam	K01446	PGRP; peptidoglycan recognition protein	NA
UHGV-2126118_9	PHROG	phrog_822	amidase	lysis
UHGV-2126118_9	UniRef90	UniRef90_A0A1Q6R2Z9	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2126118_9	eggNOG-mapper	864563.HMPREF9166_0546	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-2126118_9	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-2126118_9	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-2126118_9	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-2126118_12	KOfam	K13836	CSP; circumsporozoite protein	NA
UHGV-2126118_12	PHROG	phrog_9854	NA	unknown function
UHGV-2126118_12	eggNOG-mapper	401526.TcarDRAFT_1293	protein secretion by the type IV secretion system	NA
UHGV-2126118_12	Pfam	PF18819	Phage MuF-C-terminal domain	MuF_C
UHGV-2126118_12	Pfam	PF18857	Large polyvalent protein associated domain 38	LPD38
UHGV-2126118_12	COG	COG0503	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	NA
UHGV-2126118_14	UniRef90	UniRef90_UPI00047F33D6	Hint domain-containing protein	NA
UHGV-2126118_14	eggNOG-mapper	1232428.CAVO010000067_gene416	NA	NA
UHGV-2126118_14	Pfam	PF07591	Pretoxin HINT domain	PT-HINT
UHGV-2126118_14	Structural annotation	PF01079, NF038136	NA	NA
UHGV-2126118_15	Structural annotation	PF00765, MF_02210, NF007644, COG2153	NA	NA
UHGV-2126118_16	eggNOG-mapper	1401067.HMPREF0872_03755	NA	NA
UHGV-2126118_16	Structural annotation	PF11134, MF_03008, NF010237, TIGR04362, COG4257	NA	NA
UHGV-2126118_17	PHROG	phrog_2837	tail protein	tail
UHGV-2126118_17	UniRef90	UniRef90_A0A1Q6R2G9	NA	NA
UHGV-2126118_17	eggNOG-mapper	1286631.X805_38770	NA	NA
UHGV-2126118_17	Pfam	PF14301	NA	DUF4376
UHGV-2126118_17	Structural annotation	PF14301	NA	NA
UHGV-2126118_18	Structural annotation	PF16116	NA	NA
UHGV-2126118_19	eggNOG-mapper	742735.HMPREF9467_00719	NA	NA
UHGV-2126118_21	KOfam	K16628	COL7A; collagen type VII alpha	NA
UHGV-2126118_21	PHROG	phrog_819	tail protein	tail
UHGV-2126118_21	eggNOG-mapper	1203606.HMPREF1526_02029	Collagen triple helix repeat (20 copies)	NA
UHGV-2126118_21	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-2126118_21	COG	COG1409	3',5'-cyclic AMP phosphodiesterase CpdA	NA
UHGV-2126118_21	Structural annotation	PF10651	NA	NA
UHGV-2126118_22	PHROG	phrog_1330	tail protein	tail
UHGV-2126118_22	eggNOG-mapper	1401067.HMPREF0872_03800	cellulase activity	NA
UHGV-2126118_22	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-2126118_23	PHROG	phrog_399	structural protein	head and packaging
UHGV-2126118_23	Pfam	PF20387	NA	DUF6682
UHGV-2126118_23	Structural annotation	PF20387	NA	NA
UHGV-2126118_24	PHROG	phrog_334	major head protein	head and packaging
UHGV-2126118_24	UniRef90	UniRef90_A0A316SB53	N4-gp56 family major capsid protein	NA
UHGV-2126118_24	eggNOG-mapper	401526.TcarDRAFT_1286	NA	NA
UHGV-2126118_24	Pfam	PF13252	NA	DUF4043
UHGV-2126118_24	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-2126118_24	Structural annotation	PF13252, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-2126118_27	PHROG	phrog_156	portal protein	head and packaging
UHGV-2126118_27	UniRef90	UniRef90_F7NK66	Putative phage portal protein	NA
UHGV-2126118_27	eggNOG-mapper	401526.TcarDRAFT_1284	Tfp pilus assembly protein FimV	NA
UHGV-2126118_27	COG	COG3170	Type IV pilus assembly protein FimV	NA
UHGV-2126118_27	Structural annotation	PF16510, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-2126118_28	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-2126118_28	Structural annotation	PF04327, NF011124, COG2868	NA	NA
UHGV-2126118_29	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2126118_29	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-2126118_29	UniRef90	UniRef90_A0A316S7L1	PBSX family phage terminase large subunit	NA
UHGV-2126118_29	eggNOG-mapper	1009370.ALO_12436	Phage terminase, large subunit	NA
UHGV-2126118_29	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-2126118_29	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2126118_29	COG	COG1783	Phage terminase large subunit	NA
UHGV-2126118_29	Structural annotation	PF04466, PF20454, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-2126118_31	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-2126118_31	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-2126118_31	UniRef90	UniRef90_UPI0015C469A8	terminase small subunit	NA
UHGV-2126118_31	eggNOG-mapper	1347392.CCEZ01000005_gene1228	Terminase small subunit	NA
UHGV-2126118_31	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-2126118_31	COG	COG3728	Phage terminase, small subunit	NA
UHGV-2126118_32	eggNOG-mapper	1280689.AUJC01000003_gene960	NA	NA
UHGV-2126118_34	UniRef90	UniRef90_W1I432	Uncultured bacterium plasmid pRGI00226	NA
UHGV-2126118_35	PHROG	phrog_13470	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2126118_35	eggNOG-mapper	742738.HMPREF9460_00886	NA	NA
UHGV-2126118_36	PHROG	phrog_2329	NA	unknown function
UHGV-2126118_36	UniRef90	UniRef90_A0A2R2ZGX3	Putative PemI	NA
UHGV-2126118_36	eggNOG-mapper	1120746.CCNL01000005_gene152	NA	NA
UHGV-2126118_36	Pfam	PF04014	Antidote-toxin recognition MazE, bacterial antitoxin	MazE_antitoxin
UHGV-2126118_36	Structural annotation	PF04014, NF007312, COG2336	NA	NA
UHGV-2126118_37	eggNOG-mapper	401526.TcarDRAFT_1279	phage transcriptional regulator, RinA family	NA
UHGV-2126118_37	Structural annotation	PF05263, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-2126118_38	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2126118_38	UniRef90	UniRef90_UPI0018C4B0C5	NA	NA
UHGV-2126118_38	eggNOG-mapper	1347392.CCEZ01000043_gene417	NA	NA
UHGV-2126118_38	Pfam	PF06356	NA	DUF1064
UHGV-2126118_38	Structural annotation	PF06356	NA	NA
UHGV-2126118_39	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-2126118_39	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2126118_39	UniRef90	UniRef90_R6WK64	Single-stranded DNA-binding protein	NA
UHGV-2126118_39	eggNOG-mapper	626939.HMPREF9443_01150	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-2126118_39	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-2126118_39	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-2126118_39	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2126118_39	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-2126118_39	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-2126118_41	Structural annotation	PF16857, MF_00273, NF001981, COG2157	NA	NA