UHGV-2126478

Genome information

vOTU vOTU-042008

Genome length 29,273 bps

CDS count 46

Completeness 62.60% (medium-quality)

geNomad score 0.9763

Prediction confidence Confident

Genome information
Genome ID	UHGV-2126478
vOTU ID	vOTU-042008
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029621\|Ga0245126_1000101\|provirus_11927_45167
BioSample	SAMEA3449178
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	HMM-based
CheckV completeness	62.60% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9763
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	28.97
Jumbo phage	No

Genome content
Genome length	29,273 bps
GC content	47.27%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	46
CDS density	93.62%
Average CDS length	602.80 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2126478_1	PHROG	phrog_643	transcriptional regulator	transcription regulation
UHGV-2126478_1	UniRef90	UniRef90_A0A8E3SKS6	NA	NA
UHGV-2126478_1	eggNOG-mapper	562743.JH976434_gene1050	NA	NA
UHGV-2126478_1	Pfam	PF11195	NA	DUF2829
UHGV-2126478_1	Structural annotation	PF11195	NA	NA
UHGV-2126478_2	PHROG	phrog_750	NA	unknown function
UHGV-2126478_2	eggNOG-mapper	1231377.C426_1696	NA	NA
UHGV-2126478_7	Structural annotation	PF09035	NA	NA
UHGV-2126478_10	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2126478_10	UniRef90	UniRef90_UPI001D0EB55A	helitron helicase-like domain-containing protein	NA
UHGV-2126478_10	eggNOG-mapper	411461.DORFOR_01138	NA	NA
UHGV-2126478_10	Structural annotation	PF21578, NF041486	NA	NA
UHGV-2126478_11	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-2126478_11	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-2126478_11	UniRef90	UniRef90_R6CVM1	RNase H type-1 domain-containing protein	NA
UHGV-2126478_11	eggNOG-mapper	1235793.C809_01903	RNase H	NA
UHGV-2126478_11	Pfam	PF00075	RNase H	RNase_H
UHGV-2126478_11	COG	COG0328	Ribonuclease HI	NA
UHGV-2126478_11	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-2126478_12	eggNOG-mapper	1235793.C809_01906	NA	NA
UHGV-2126478_13	PHROG	phrog_8470	NA	unknown function
UHGV-2126478_13	UniRef90	UniRef90_UPI00042669A6	PcfJ domain-containing protein	NA
UHGV-2126478_13	eggNOG-mapper	457412.RSAG_01172	PcfJ-like protein	NA
UHGV-2126478_13	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-2126478_13	Structural annotation	PF14284	NA	NA
UHGV-2126478_14	PHROG	phrog_15077	NA	unknown function
UHGV-2126478_14	UniRef90	UniRef90_UPI0019165AFE	NA	NA
UHGV-2126478_14	eggNOG-mapper	1235793.C809_01908	NA	NA
UHGV-2126478_14	Structural annotation	PF11300, NF038070	NA	NA
UHGV-2126478_15	PHROG	phrog_24368	NA	unknown function
UHGV-2126478_15	eggNOG-mapper	742740.HMPREF9474_04313	NA	NA
UHGV-2126478_16	PHROG	phrog_7566	NA	unknown function
UHGV-2126478_16	eggNOG-mapper	483218.BACPEC_01171	NA	NA
UHGV-2126478_17	eggNOG-mapper	658655.HMPREF0988_02575	NA	NA
UHGV-2126478_19	UniRef90	UniRef90_R6BYX9	Transcriptional activator	NA
UHGV-2126478_19	Structural annotation	PF05263, TIGR01636	NA	NA
UHGV-2126478_20	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-2126478_20	UniRef90	UniRef90_A0A3A6JBK8	Restriction alleviation protein, Lar family	NA
UHGV-2126478_20	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-2126478_20	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-2126478_20	Structural annotation	PF14354, TIGR03655, TIGR02501	NA	NA
UHGV-2126478_21	COG	COG2822	Iron uptake system EfeUOB, periplasmic (or lipoprotein) component EfeO/EfeM	NA
UHGV-2126478_22	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-2126478_22	UniRef90	UniRef90_R6C1K8	HTH cro/C1-type domain-containing protein	NA
UHGV-2126478_22	eggNOG-mapper	1048834.TC41_1894	sequence-specific DNA binding	NA
UHGV-2126478_22	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2126478_22	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2126478_22	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-2126478_23	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-2126478_23	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2126478_23	UniRef90	UniRef90_A0A1C5W216	HTH-type transcriptional regulator immR	NA
UHGV-2126478_23	eggNOG-mapper	397290.C810_01482	Helix-turn-helix XRE-family like proteins	NA
UHGV-2126478_23	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-2126478_23	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2126478_23	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-2126478_23	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-2126478_25	UniRef90	UniRef90_R6CCZ5	Methyl-accepting chemotaxis protein	NA
UHGV-2126478_25	eggNOG-mapper	1042156.CXIVA_01520	NA	NA
UHGV-2126478_25	Structural annotation	NF008671, COG4710	NA	NA
UHGV-2126478_26	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-2126478_26	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2126478_26	UniRef90	UniRef90_R6C1K3	HNH endonuclease domain protein	NA
UHGV-2126478_26	eggNOG-mapper	235909.GK0526	HNH nucleases	NA
UHGV-2126478_26	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2126478_27	PHROG	phrog_1066	NA	unknown function
UHGV-2126478_27	eggNOG-mapper	1094508.Tsac_2428	NA	NA
UHGV-2126478_27	Structural annotation	PF05119, TIGR01558	NA	NA
UHGV-2126478_28	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2126478_28	UniRef90	UniRef90_R6BYX0	Terminase	NA
UHGV-2126478_28	eggNOG-mapper	1160721.RBI_I01585	large subunit	NA
UHGV-2126478_28	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-2126478_28	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2126478_28	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2126478_28	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-2126478_29	PHROG	phrog_12	portal protein	head and packaging
UHGV-2126478_29	UniRef90	UniRef90_R6CVK3	HK97 family phage portal protein	NA
UHGV-2126478_29	eggNOG-mapper	457415.HMPREF1006_01804	Portal protein	NA
UHGV-2126478_29	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2126478_29	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2126478_29	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-2126478_30	KOfam	K06904	NA	NA
UHGV-2126478_30	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-2126478_30	UniRef90	UniRef90_R6CCZ0	Phage prohead protease HK97 family	NA
UHGV-2126478_30	eggNOG-mapper	324057.Pjdr2_1542	Caudovirus prohead serine protease	NA
UHGV-2126478_30	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-2126478_30	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-2126478_30	COG	COG3740	Phage head maturation protease	NA
UHGV-2126478_30	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-2126478_31	PHROG	phrog_10	major head protein	head and packaging
UHGV-2126478_31	UniRef90	UniRef90_UPI001C038412	phage major capsid protein	NA
UHGV-2126478_31	eggNOG-mapper	742740.HMPREF9474_04304	Phage capsid family	NA
UHGV-2126478_31	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2126478_31	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2126478_31	Structural annotation	PF05065, PF09032, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2126478_33	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-2126478_33	COG	COG5614	Phage head-tail adaptor	NA
UHGV-2126478_33	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-2126478_34	UniRef90	UniRef90_R6CVJ7	HK97 gp10 family phage protein	NA
UHGV-2126478_34	eggNOG-mapper	1235793.C809_01923	NA	NA
UHGV-2126478_34	Structural annotation	TIGR01725	NA	NA
UHGV-2126478_35	Structural annotation	PF05657, NF040576, COG3167	NA	NA
UHGV-2126478_36	PHROG	phrog_88	major tail protein	tail
UHGV-2126478_36	UniRef90	UniRef90_R6C1J4	Phage major tail protein phi13 family	NA
UHGV-2126478_36	eggNOG-mapper	1235792.C808_03059	phage major tail protein, phi13 family	NA
UHGV-2126478_36	Pfam	PF13290	Chitobiase/beta-hexosaminidase C-terminal domain	CHB_HEX_C_1
UHGV-2126478_36	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-2126478_36	COG	COG5492	NA	NA
UHGV-2126478_36	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-2126478_37	eggNOG-mapper	1235792.C808_03058	NA	NA
UHGV-2126478_37	Structural annotation	PF11836	NA	NA
UHGV-2126478_38	PHROG	phrog_28775	tail length tape measure protein	tail
UHGV-2126478_38	UniRef90	UniRef90_R6CVJ2	Phage tail tape measure protein TP901 family core region	NA
UHGV-2126478_38	eggNOG-mapper	748224.HMPREF9436_03326	Phage tail tape measure protein, TP901 family	NA
UHGV-2126478_38	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-2126478_38	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-2126478_38	COG	COG5283	Phage-related tail protein	NA
UHGV-2126478_38	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-2126478_39	PHROG	phrog_20385	minor tail protein	tail
UHGV-2126478_39	UniRef90	UniRef90_UPI001C013719	phage baseplate protein	NA
UHGV-2126478_39	eggNOG-mapper	1235793.C809_04317	NA	NA
UHGV-2126478_39	Pfam	PF16774	Distal tail protein, N-terminal domain	Dit_N
UHGV-2126478_39	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-2126478_40	PHROG	phrog_7064	tail protein	tail
UHGV-2126478_40	eggNOG-mapper	1235793.C809_04316	NA	NA
UHGV-2126478_40	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-2126478_41	PHROG	phrog_5811	NA	unknown function
UHGV-2126478_41	eggNOG-mapper	665956.HMPREF1032_00105	NA	NA
UHGV-2126478_45	PHROG	phrog_199	holin	lysis
UHGV-2126478_45	UniRef90	UniRef90_UPI001EE92C08	phage holin family protein	NA
UHGV-2126478_45	eggNOG-mapper	1235793.C809_01935	Bacteriophage holin family	NA
UHGV-2126478_45	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-2126478_45	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-2126478_45	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-2126478_45	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-2126478_46	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2126478_46	PHROG	phrog_435	endolysin	lysis
UHGV-2126478_46	UniRef90	UniRef90_A0A371ILS0	Muramidase (Flagellum-specific)	NA
UHGV-2126478_46	eggNOG-mapper	1449050.JNLE01000003_gene185	Ami_3	NA
UHGV-2126478_46	Pfam	PF01832	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
UHGV-2126478_46	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-2126478_46	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-2126478_46	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2126478_46	Structural annotation	PF01520, PF01832, MF_00562, NF038016, TIGR02883, COG1705, COG0860	NA	NA