UHGV-2126714

Genome information

vOTU vOTU-042009

Genome length 32,426 bps

CDS count 38

Completeness 70.03% (medium-quality)

geNomad score 0.9649

Prediction confidence Confident

Genome information
Genome ID	UHGV-2126714
vOTU ID	vOTU-042009
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029718\|Ga0245237_1000889
BioSample	SAMEA3449289
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	70.03% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9649
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	13.78
Jumbo phage	No

Genome content
Genome length	32,426 bps
GC content	49.45%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	38
CDS density	88.29%
Average CDS length	755.61 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2126714_1	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-2126714_1	UniRef90	UniRef90_A0A660M5U1	ATP-dependent Clp protease proteolytic subunit (Fragment)	NA
UHGV-2126714_1	eggNOG-mapper	641112.ACOK01000108_gene1798	Belongs to the peptidase S14 family	NA
UHGV-2126714_1	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-2126714_2	PHROG	phrog_12	portal protein	head and packaging
UHGV-2126714_2	UniRef90	UniRef90_A0A1K1YMT8	Phage portal protein, HK97 family	NA
UHGV-2126714_2	eggNOG-mapper	1384066.JAGT01000001_gene939	Phage portal protein, HK97 family	NA
UHGV-2126714_2	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2126714_2	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-2126714_2	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2126714_2	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-2126714_3	KOfam	K08281	pncA; nicotinamidase/pyrazinamidase [EC:3.5.1.19 3.5.1.-]	NA
UHGV-2126714_3	UniRef90	UniRef90_A0A1H7JDS1	Nicotinamidase-related amidase	NA
UHGV-2126714_3	eggNOG-mapper	697329.Rumal_0904	Isochorismatase family	NA
UHGV-2126714_3	Pfam	PF00857	Isochorismatase family	Isochorismatase
UHGV-2126714_3	COG	COG1335	Nicotinamidase-related amidase	NA
UHGV-2126714_4	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2126714_4	UniRef90	UniRef90_A0A1K1YL55	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2126714_4	eggNOG-mapper	1384066.JAGT01000001_gene941	large subunit	NA
UHGV-2126714_4	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-2126714_4	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2126714_4	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2126714_4	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-2126714_5	PHROG	phrog_4709	NA	unknown function
UHGV-2126714_5	eggNOG-mapper	1384066.JAGT01000001_gene942	NA	NA
UHGV-2126714_5	AcrCatalog	cluster_3300	NA	NA
UHGV-2126714_6	PHROG	phrog_3777	NA	unknown function
UHGV-2126714_6	UniRef90	UniRef90_UPI001EDDAED0	NA	NA
UHGV-2126714_6	eggNOG-mapper	1384066.JAGT01000001_gene944	NA	NA
UHGV-2126714_6	Pfam	PF12957	NA	DUF3846
UHGV-2126714_6	COG	COG4734	Antirestriction protein ArdA	NA
UHGV-2126714_6	Structural annotation	PF12957	NA	NA
UHGV-2126714_7	PHROG	phrog_2945	NA	unknown function
UHGV-2126714_7	UniRef90	UniRef90_W7US45	Hydrogenase maturation protein HypF	NA
UHGV-2126714_7	eggNOG-mapper	1341157.RF007C_02690	NA	NA
UHGV-2126714_8	KOfam	K00682	GGCT; gamma-glutamylcyclotransferase [EC:4.3.2.9]	NA
UHGV-2126714_8	PHROG	phrog_2520	gamma-glutamyl cyclotransferase	moron, auxiliary metabolic gene and host takeover
UHGV-2126714_8	UniRef90	UniRef90_W7UZM5	Gamma-glutamyl cyclotransferase	NA
UHGV-2126714_8	eggNOG-mapper	1341157.RF007C_02695	Gamma-glutamyl cyclotransferase, AIG2-like	NA
UHGV-2126714_8	Pfam	PF06094	Gamma-glutamyl cyclotransferase, AIG2-like	GGACT
UHGV-2126714_8	COG	COG2105	Predicted gamma-glutamylamine cyclotransferase YtfP, GGCT/AIG2-like family	NA
UHGV-2126714_8	Structural annotation	PF06094, COG2105	NA	NA
UHGV-2126714_9	PHROG	phrog_2443	amidoligase enzyme	other
UHGV-2126714_9	UniRef90	UniRef90_A0A1K1YLZ1	Putative amidoligase enzyme	NA
UHGV-2126714_9	eggNOG-mapper	1341157.RF007C_02705	Putative amidoligase enzyme	NA
UHGV-2126714_9	AcrCatalog	cluster_58247	NA	NA
UHGV-2126714_9	Pfam	PF12224	Putative amidoligase enzyme	Amidoligase_2
UHGV-2126714_9	Structural annotation	PF12224	NA	NA
UHGV-2126714_10	PHROG	phrog_3782	NA	unknown function
UHGV-2126714_10	UniRef90	UniRef90_A0A1H7KZT6	NA	NA
UHGV-2126714_10	eggNOG-mapper	1341157.RF007C_02710	NA	NA
UHGV-2126714_10	Pfam	PF14192	NA	DUF4314
UHGV-2126714_10	COG	COG2105	Predicted gamma-glutamylamine cyclotransferase YtfP, GGCT/AIG2-like family	NA
UHGV-2126714_10	Structural annotation	PF14192, MF_00754, NF003019	NA	NA
UHGV-2126714_11	PHROG	phrog_2443	amidoligase enzyme	other
UHGV-2126714_11	UniRef90	UniRef90_A0A374VL88	Virulence protein	NA
UHGV-2126714_11	eggNOG-mapper	641112.ACOK01000108_gene1786	NA	NA
UHGV-2126714_12	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-2126714_12	PHROG	phrog_498	DNA methyltransferase	other
UHGV-2126714_12	UniRef90	UniRef90_A0A1K1YLD1	DNA modification methylase	NA
UHGV-2126714_12	eggNOG-mapper	1384066.JAGT01000001_gene951	NA	NA
UHGV-2126714_12	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-2126714_12	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-2126714_12	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-2126714_12	COG	COG0863	DNA modification methylase	NA
UHGV-2126714_12	Structural annotation	PF01555, PF02195, MF_02015, MF_01872, NF010253, TIGR04285, COG0863, COG1475	NA	NA
UHGV-2126714_13	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-2126714_13	UniRef90	UniRef90_A0A374VKN7	Terminase	NA
UHGV-2126714_13	eggNOG-mapper	641112.ACOK01000108_gene1784	NA	NA
UHGV-2126714_13	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-2126714_14	PHROG	phrog_5978	NA	unknown function
UHGV-2126714_14	UniRef90	UniRef90_W7UJF4	Fido domain-containing protein	NA
UHGV-2126714_14	eggNOG-mapper	1341157.RF007C_05735	Fic/DOC family	NA
UHGV-2126714_14	Pfam	PF02661	Fic/DOC family	Fic
UHGV-2126714_14	COG	COG3177	Fic family protein	NA
UHGV-2126714_14	Structural annotation	PF02661, PF07106, TIGR02613, NF000244, COG3177	NA	NA
UHGV-2126714_15	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-2126714_15	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2126714_15	UniRef90	UniRef90_A0A1K1LJC3	5-methylcytosine-specific restriction enzyme A	NA
UHGV-2126714_15	eggNOG-mapper	1384066.JAGT01000001_gene953	HNH endonuclease	NA
UHGV-2126714_15	Pfam	PF01844	HNH endonuclease	HNH
UHGV-2126714_15	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2126714_15	Structural annotation	PF01844, COG1403	NA	NA
UHGV-2126714_16	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2126714_16	UniRef90	UniRef90_A0A898FNB6	NA	NA
UHGV-2126714_16	eggNOG-mapper	1384066.JAGT01000001_gene954	NA	NA
UHGV-2126714_16	Pfam	PF07374	NA	DUF1492
UHGV-2126714_16	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-2126714_17	KOfam	K20093	ERCC6L, PICH; DNA excision repair protein ERCC-6-like [EC:5.6.2.-]	NA
UHGV-2126714_17	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2126714_17	UniRef90	UniRef90_A0A374VT12	ATP-dependent helicase	NA
UHGV-2126714_17	eggNOG-mapper	1384066.JAGT01000001_gene956	helicase	NA
UHGV-2126714_17	PADLOC	DpdE_00012	DpdE	DPD
UHGV-2126714_17	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-2126714_17	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-2126714_17	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-2126714_17	Structural annotation	PF13872, PF16203, MF_01821, NF041790, COG0553	NA	NA
UHGV-2126714_18	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2126714_18	UniRef90	UniRef90_UPI0004902E1A	VRR-NUC domain-containing protein	NA
UHGV-2126714_18	eggNOG-mapper	1384066.JAGT01000001_gene957	VRR_NUC	NA
UHGV-2126714_18	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-2126714_18	Structural annotation	PF01870, MF_00130, NF002584, COG1591	NA	NA
UHGV-2126714_19	KOfam	K06919	K06919; putative DNA primase/helicase	NA
UHGV-2126714_19	PHROG	phrog_1883	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2126714_19	UniRef90	UniRef90_UPI0004636BFA	phage/plasmid primase, P4 family	NA
UHGV-2126714_19	eggNOG-mapper	1384066.JAGT01000001_gene958	Phage plasmid primase, P4 family	NA
UHGV-2126714_19	Pfam	PF08706	D5 N terminal like	D5_N
UHGV-2126714_19	Pfam	PF19263	NA	DUF5906
UHGV-2126714_19	NCBIFam	TIGR01613.1	phage/plasmid primase, P4 family	NA
UHGV-2126714_19	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-2126714_19	Structural annotation	PF19263, PF08706, PF03288, PF09250, MF_04000, TIGR01613, COG3378	NA	NA
UHGV-2126714_20	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-2126714_20	UniRef90	UniRef90_A0A374VUF7	NA	NA
UHGV-2126714_20	eggNOG-mapper	1384066.JAGT01000001_gene959	NA	NA
UHGV-2126714_20	Pfam	PF14359	NA	DUF4406
UHGV-2126714_20	Structural annotation	PF14359, NF007979, COG3613	NA	NA
UHGV-2126714_22	PHROG	phrog_21057	NA	unknown function
UHGV-2126714_22	eggNOG-mapper	1384066.JAGT01000001_gene961	NA	NA
UHGV-2126714_22	Structural annotation	PF13451	NA	NA
UHGV-2126714_23	KOfam	K02334	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	NA
UHGV-2126714_23	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-2126714_23	UniRef90	UniRef90_A0A1K1YJA3	DNA polymerase	NA
UHGV-2126714_23	eggNOG-mapper	1384066.JAGT01000001_gene962	NA	NA
UHGV-2126714_23	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-2126714_23	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-2126714_23	Structural annotation	PF00476, MF_04101, NF011540, COG0749	NA	NA
UHGV-2126714_25	PHROG	phrog_112	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2126714_25	UniRef90	UniRef90_A0A7X7VRJ8	NA	NA
UHGV-2126714_25	eggNOG-mapper	1384066.JAGT01000001_gene964	NA	NA
UHGV-2126714_25	Pfam	PF10991	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
UHGV-2126714_25	Structural annotation	PF10991, MF_04153	NA	NA
UHGV-2126714_26	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-2126714_26	UniRef90	UniRef90_A0A374VT23	NA	NA
UHGV-2126714_26	eggNOG-mapper	1384066.JAGT01000001_gene965	NA	NA
UHGV-2126714_26	Pfam	PF10926	NA	DUF2800
UHGV-2126714_26	COG	COG2887	RecB family exonuclease	NA
UHGV-2126714_26	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-2126714_27	PHROG	phrog_408	NA	unknown function
UHGV-2126714_27	UniRef90	UniRef90_A0A3C0QQ05	rRNA biogenesis protein rrp5	NA
UHGV-2126714_27	eggNOG-mapper	1384066.JAGT01000001_gene966	NA	NA
UHGV-2126714_28	PHROG	phrog_13787	NA	unknown function
UHGV-2126714_28	UniRef90	UniRef90_A0A7X9C5X9	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-2126714_28	eggNOG-mapper	1384066.JAGT01000001_gene967	NA	NA
UHGV-2126714_28	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-2126714_28	Structural annotation	PF13412, MF_00959, NF006146, COG1191	NA	NA
UHGV-2126714_30	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-2126714_30	UniRef90	UniRef90_A0A1K1YIQ6	DNA-binding transcriptional regulator, XRE family	NA
UHGV-2126714_30	eggNOG-mapper	641112.ACOK01000108_gene1770	Cro/C1-type HTH DNA-binding domain	NA
UHGV-2126714_30	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-2126714_30	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-2126714_30	Structural annotation	PF13443, NF000090, COG3655	NA	NA
UHGV-2126714_31	UniRef90	UniRef90_UPI0010FCFA87	SAVED domain-containing protein	NA
UHGV-2126714_31	eggNOG-mapper	641112.ACOK01000108_gene1769	NA	NA
UHGV-2126714_31	PADLOC	HamA1_00015	NA	Hachiman
UHGV-2126714_31	Pfam	PF08878	HamA	HamA
UHGV-2126714_31	Structural annotation	PF08878	NA	NA
UHGV-2126714_32	KOfam	K03726	helS; ATP-dependent DNA helicase [EC:5.6.2.4]	NA
UHGV-2126714_32	PHROG	phrog_35989	NA	unknown function
UHGV-2126714_32	UniRef90	UniRef90_A0A1K1YIJ0	DEAD/DEAH box helicase	NA
UHGV-2126714_32	eggNOG-mapper	457415.HMPREF1006_00433	response to ionizing radiation	NA
UHGV-2126714_32	PADLOC	HamB1_00017	DEAD-box helicase	Hachiman
UHGV-2126714_32	Pfam	PF00270	DEAD/DEAH box helicase	DEAD
UHGV-2126714_32	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-2126714_32	COG	COG1204	Replicative superfamily II helicase	NA
UHGV-2126714_32	Structural annotation	PF02399, MF_00442, NF040935, COG1204	NA	NA
UHGV-2126714_33	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-2126714_33	PHROG	phrog_2713	NA	unknown function
UHGV-2126714_33	UniRef90	UniRef90_W7V2M6	Site-specific DNA-methyltransferase (adenine-specific)	NA
UHGV-2126714_33	eggNOG-mapper	1341157.RF007C_02855	type I restriction-modification system DNA methylase K03427	NA
UHGV-2126714_33	PADLOC	MTase_I_00002	Type I methyltransferase	RM
UHGV-2126714_33	Pfam	PF12161	HsdM N-terminal domain	HsdM_N
UHGV-2126714_33	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-2126714_33	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-2126714_33	Structural annotation	PF02384, MF_00786, TIGR00497, COG0286	NA	NA
UHGV-2126714_34	KOfam	K01154	hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]	NA
UHGV-2126714_34	PHROG	phrog_2668	NA	unknown function
UHGV-2126714_34	UniRef90	UniRef90_UPI001C0330EE	restriction endonuclease subunit S	NA
UHGV-2126714_34	eggNOG-mapper	411483.FAEPRAA2165_02695	type I restriction modification DNA specificity domain	NA
UHGV-2126714_34	PADLOC	Specificity_I_00035	Type I specificity subunit	RM
UHGV-2126714_34	Pfam	PF01420	Type I restriction modification DNA specificity domain	Methylase_S
UHGV-2126714_34	COG	COG0732	Restriction endonuclease S subunit	NA
UHGV-2126714_34	Structural annotation	PF01420, COG0732	NA	NA
UHGV-2126714_35	UniRef90	UniRef90_A0A1H7QSP3	Type I restriction modification DNA specificity domain-containing protein	NA
UHGV-2126714_35	eggNOG-mapper	596330.HMPREF0628_1613	Type I restriction	NA
UHGV-2126714_35	PADLOC	Specificity_I_00031	Type I specificity subunit	RM
UHGV-2126714_35	Pfam	PF01420	Type I restriction modification DNA specificity domain	Methylase_S
UHGV-2126714_35	COG	COG0732	Restriction endonuclease S subunit	NA
UHGV-2126714_37	KOfam	K03733	xerC; integrase/recombinase XerC	NA
UHGV-2126714_37	PHROG	phrog_1	integrase	integration and excision
UHGV-2126714_37	UniRef90	UniRef90_W7URY6	Integrase	NA
UHGV-2126714_37	eggNOG-mapper	1341157.RF007C_00050	Belongs to the 'phage' integrase family	NA
UHGV-2126714_37	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-2126714_37	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2126714_37	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-2126714_37	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-2126714_38	KOfam	K01154	hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]	NA
UHGV-2126714_38	PHROG	phrog_2668	NA	unknown function
UHGV-2126714_38	UniRef90	UniRef90_W7UZI9	Methylase_S domain-containing protein (Fragment)	NA
UHGV-2126714_38	eggNOG-mapper	1341157.RF007C_00055	Type I restriction modification DNA specificity domain	NA
UHGV-2126714_38	PADLOC	Specificity_I_00035	Type I specificity subunit	RM
UHGV-2126714_38	Pfam	PF01420	Type I restriction modification DNA specificity domain	Methylase_S
UHGV-2126714_38	COG	COG0732	Restriction endonuclease S subunit	NA