UHGV-2127020

Genome information

Genome length 44,821 bps

CDS count 56

Completeness 99.90% (high-quality)

geNomad score 0.9747

Prediction confidence Confident

Genome information
Genome ID	UHGV-2127020
vOTU ID	vOTU-008112
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029717\|Ga0245160_1000118\|provirus_67168_111988
BioSample	SAMEA3449212
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	7
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9747
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	13.1
Jumbo phage	No

Genome content
Genome length	44,821 bps
GC content	52.69%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	56
CDS density	93.08%
Average CDS length	747.91 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2127020_1	eggNOG-mapper	709991.Odosp_0825	NA	NA
UHGV-2127020_5	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-2127020_5	PHROG	phrog_6444	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-2127020_5	UniRef90	UniRef90_UPI0018A8974B	DNA primase	NA
UHGV-2127020_5	eggNOG-mapper	908612.HMPREF9720_2451	DNA primase catalytic core, N-terminal domain	NA
UHGV-2127020_5	PADLOC	drt-UG29	DRT	DRT
UHGV-2127020_5	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-2127020_5	Pfam	PF08275	DNA primase catalytic core, N-terminal domain	DNAG_N
UHGV-2127020_5	Pfam	PF13155	Toprim-like	Toprim_2
UHGV-2127020_5	NCBIFam	TIGR01391.1	DNA primase	NA
UHGV-2127020_5	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-2127020_5	HAMAP	MF_00974	DNA primase [dnaG]	NA
UHGV-2127020_5	Structural annotation	PF01807, PF08275, PF06048, MF_00974, MF_00016, TIGR01391, NF040949, COG0358, COG5519	NA	NA
UHGV-2127020_6	UniRef90	UniRef90_UPI0018A06539	helix-turn-helix transcriptional regulator	NA
UHGV-2127020_6	eggNOG-mapper	908612.HMPREF9720_2450	NA	NA
UHGV-2127020_6	Structural annotation	NF041951, COG1396	NA	NA
UHGV-2127020_8	PHROG	phrog_874	NA	unknown function
UHGV-2127020_8	eggNOG-mapper	1033732.CAHI01000035_gene2756	NA	NA
UHGV-2127020_8	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-2127020_9	PHROG	phrog_9298	radical SAM domain protein	other
UHGV-2127020_9	UniRef90	UniRef90_D4C6F1	Elp3 domain-containing protein	NA
UHGV-2127020_9	eggNOG-mapper	679935.Alfi_2694	radical SAM domain protein	NA
UHGV-2127020_9	COG	COG1032	Radical SAM superfamily enzyme YgiQ, UPF0313 family	NA
UHGV-2127020_9	Structural annotation	PF04055, MF_01864, TIGR04072, COG0621	NA	NA
UHGV-2127020_10	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-2127020_10	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-2127020_10	UniRef90	UniRef90_UPI001899D1D8	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-2127020_10	eggNOG-mapper	1203611.KB894547_gene2575	sulfate reduction	NA
UHGV-2127020_10	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-2127020_10	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-2127020_10	Structural annotation	PF01507, MF_00063, NF006327, COG0175	NA	NA
UHGV-2127020_11	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-2127020_11	PHROG	phrog_116	DNA methyltransferase	other
UHGV-2127020_11	UniRef90	UniRef90_UPI0011C74747	DNA cytosine methyltransferase	NA
UHGV-2127020_11	eggNOG-mapper	1033732.CAHI01000035_gene2755	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-2127020_11	PADLOC	MTase_II_00164	Type II methyltransferase	RM
UHGV-2127020_11	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-2127020_11	COG	COG0270	DNA-cytosine methylase	NA
UHGV-2127020_11	Structural annotation	PF00145, MF_02100, TIGR00675, COG0270	NA	NA
UHGV-2127020_12	eggNOG-mapper	1033732.CAHI01000035_gene2755	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-2127020_12	COG	COG0270	DNA-cytosine methylase	NA
UHGV-2127020_17	KOfam	K21511	GPC; capsid assembly protease [EC:3.4.21.-]	NA
UHGV-2127020_17	PHROG	phrog_53	head maturation protease	head and packaging
UHGV-2127020_17	UniRef90	UniRef90_UPI00189C4273	S49 family peptidase	NA
UHGV-2127020_17	eggNOG-mapper	1203611.KB894547_gene2582	Peptidase, S49 (Protease IV) family protein	NA
UHGV-2127020_17	Pfam	PF01343	Peptidase family S49	Peptidase_S49
UHGV-2127020_17	COG	COG0616	Periplasmic serine protease, ClpP class	NA
UHGV-2127020_17	Structural annotation	PF01343, MF_01051, TIGR00706, COG0616	NA	NA
UHGV-2127020_18	eggNOG-mapper	1203611.KB894547_gene2583	NA	NA
UHGV-2127020_18	Structural annotation	PF05065, MF_04119, TIGR01551, COG4653	NA	NA
UHGV-2127020_19	PHROG	phrog_19897	NA	unknown function
UHGV-2127020_19	eggNOG-mapper	272559.BF9343_2338	NA	NA
UHGV-2127020_19	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-2127020_20	Structural annotation	PF03414, NF009924	NA	NA
UHGV-2127020_21	PHROG	phrog_21662	NA	unknown function
UHGV-2127020_21	eggNOG-mapper	1033732.CAHI01000035_gene2747	NA	NA
UHGV-2127020_22	PHROG	phrog_20504	NA	unknown function
UHGV-2127020_22	eggNOG-mapper	1033732.CAHI01000035_gene2746	NA	NA
UHGV-2127020_23	eggNOG-mapper	1033732.CAHI01000035_gene2745	NA	NA
UHGV-2127020_23	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-2127020_24	PHROG	phrog_26140	NA	unknown function
UHGV-2127020_24	eggNOG-mapper	908612.HMPREF9720_0693	NA	NA
UHGV-2127020_25	PHROG	phrog_22277	NA	unknown function
UHGV-2127020_25	eggNOG-mapper	1033732.CAHI01000035_gene2739	NA	NA
UHGV-2127020_25	Structural annotation	PF07230, MF_04135, TIGR01540, COG5518	NA	NA
UHGV-2127020_26	PHROG	phrog_27760	NA	unknown function
UHGV-2127020_26	eggNOG-mapper	1033732.CAHI01000035_gene2738	NA	NA
UHGV-2127020_26	Pfam	PF20459	NA	DUF6712
UHGV-2127020_26	Structural annotation	PF20459	NA	NA
UHGV-2127020_27	eggNOG-mapper	1033732.CAHI01000035_gene2737	NA	NA
UHGV-2127020_28	Structural annotation	PF11367, COG2029	NA	NA
UHGV-2127020_29	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-2127020_29	PHROG	phrog_28718	NA	unknown function
UHGV-2127020_29	UniRef90	UniRef90_A0A358M0B8	Site-specific DNA-methyltransferase (adenine-specific)	NA
UHGV-2127020_29	eggNOG-mapper	1203611.KB894547_gene2588	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-2127020_29	PADLOC	MTase_II_00054	Type II methyltransferase	RM
UHGV-2127020_29	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-2127020_29	COG	COG0338	DNA-adenine methylase	NA
UHGV-2127020_29	Structural annotation	PF02086, TIGR00571, COG0338	NA	NA
UHGV-2127020_30	PHROG	phrog_2523	NA	unknown function
UHGV-2127020_30	UniRef90	UniRef90_A0A174S544	Addiction module toxin RelE	NA
UHGV-2127020_30	eggNOG-mapper	667015.Bacsa_2679	NA	NA
UHGV-2127020_30	Pfam	PF05973	NA	Gp49
UHGV-2127020_30	COG	COG4679	Phage-related protein	NA
UHGV-2127020_30	Structural annotation	PF05973, TIGR00053, COG4683	NA	NA
UHGV-2127020_31	KOfam	K15773	hipB; HTH-type transcriptional regulator / antitoxin HipB	NA
UHGV-2127020_31	PHROG	phrog_1373	transcriptional regulator	transcription regulation
UHGV-2127020_31	UniRef90	UniRef90_F0QZU1	Helix-turn-helix domain protein	NA
UHGV-2127020_31	eggNOG-mapper	667015.Bacsa_2678	Helix-turn-helix domain	NA
UHGV-2127020_31	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-2127020_31	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2127020_31	COG	COG3620	Predicted transcriptional regulator, contains an XRE-type HTH domain (archaeal members contain CBS pair)	NA
UHGV-2127020_31	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-2127020_34	UniRef90	UniRef90_A0A3D6E9W8	Core-binding (CB) domain-containing protein	NA
UHGV-2127020_34	eggNOG-mapper	880526.KE386488_gene461	NA	NA
UHGV-2127020_35	PHROG	phrog_25337	tail length tape measure protein	tail
UHGV-2127020_35	UniRef90	UniRef90_UPI0018977D21	phage tail tape measure protein	NA
UHGV-2127020_35	eggNOG-mapper	908612.HMPREF9720_0700	Phage-related minor tail protein	NA
UHGV-2127020_35	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-2127020_35	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-2127020_35	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-2127020_35	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-2127020_36	eggNOG-mapper	1033732.CAHI01000035_gene2731	NA	NA
UHGV-2127020_36	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-2127020_37	eggNOG-mapper	1033732.CAHI01000035_gene2730	NA	NA
UHGV-2127020_37	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-2127020_39	PHROG	phrog_20680	NA	unknown function
UHGV-2127020_39	eggNOG-mapper	470145.BACCOP_01126	NA	NA
UHGV-2127020_40	UniRef90	UniRef90_A0A5B3GAI3	LamG domain-containing protein	NA
UHGV-2127020_40	Pfam	PF13385	Concanavalin A-like lectin/glucanases superfamily	Laminin_G_3
UHGV-2127020_40	Structural annotation	PF13385, PF03944, PF16824, NF033675, COG3506	NA	NA
UHGV-2127020_42	Structural annotation	PF10043, NF008028	NA	NA
UHGV-2127020_43	PHROG	phrog_32423	NA	unknown function
UHGV-2127020_44	PHROG	phrog_873	endolysin	head and packaging
UHGV-2127020_44	UniRef90	UniRef90_UPI0018ABA41D	structural protein P5	NA
UHGV-2127020_44	eggNOG-mapper	411477.PARMER_01682	NA	NA
UHGV-2127020_45	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-2127020_45	PHROG	phrog_67	DNA methyltransferase	other
UHGV-2127020_45	UniRef90	UniRef90_A0A5M5M510	Methyltransferase	NA
UHGV-2127020_45	eggNOG-mapper	865938.Weevi_0267	DNA methylase	NA
UHGV-2127020_45	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-2127020_45	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-2127020_45	COG	COG0863	DNA modification methylase	NA
UHGV-2127020_45	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-2127020_46	PHROG	phrog_14010	NA	unknown function
UHGV-2127020_46	eggNOG-mapper	1033732.CAHI01000035_gene2726	NA	NA
UHGV-2127020_46	Pfam	PF20186	NA	DUF6549
UHGV-2127020_46	Structural annotation	PF20186	NA	NA
UHGV-2127020_47	PHROG	phrog_15610	protease	other
UHGV-2127020_47	UniRef90	UniRef90_A0A0J6CFE9	Membrane protein	NA
UHGV-2127020_47	eggNOG-mapper	1347393.HG726024_gene2889	NA	NA
UHGV-2127020_48	eggNOG-mapper	445970.ALIPUT_01633	Bacterial dnaA protein helix-turn-helix	NA
UHGV-2127020_48	Structural annotation	PF08299, NF004688	NA	NA
UHGV-2127020_53	Structural annotation	PF10628	NA	NA
UHGV-2127020_56	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-2127020_56	PHROG	phrog_1	integrase	integration and excision
UHGV-2127020_56	UniRef90	UniRef90_R7JKN8	Site-specific recombinase XerD	NA
UHGV-2127020_56	eggNOG-mapper	679935.Alfi_0474	Arm DNA-binding domain	NA
UHGV-2127020_56	Pfam	PF17293	Arm DNA-binding domain	Arm-DNA-bind_5
UHGV-2127020_56	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-2127020_56	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2127020_56	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-2127020_56	Structural annotation	PF17293, PF13102, PF00589, MF_01808, NF007246, COG4974	NA	NA