UHGV-2127755

Genome information

Genome length 14,268 bps

CDS count 26

Completeness 99.42% (high-quality)

geNomad score 0.9680

Prediction confidence Confident

Genome information
Genome ID	UHGV-2127755
vOTU ID	vOTU-007851
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029698\|Ga0245184_100880\|provirus_19617_33884
BioSample	SAMEA3449236
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.42% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	3
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9680
Virus hallmark genes (geNomad)	1
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	13.75
Jumbo phage	No

Genome content
Genome length	14,268 bps
GC content	51.74%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	26
CDS density	87.78%
Average CDS length	485.19 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2127755_4	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-2127755_4	UniRef90	UniRef90_A0A810PX76	Phage tail tape measure protein	NA
UHGV-2127755_4	eggNOG-mapper	693746.OBV_18190	domain protein	NA
UHGV-2127755_4	COG	COG1511	NA	NA
UHGV-2127755_4	Structural annotation	PF05546, TIGR02559	NA	NA
UHGV-2127755_5	PHROG	phrog_706	NA	unknown function
UHGV-2127755_5	UniRef90	UniRef90_UPI001D069FB9	Gp15 family bacteriophage protein	NA
UHGV-2127755_5	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-2127755_5	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-2127755_5	Structural annotation	PF06854	NA	NA
UHGV-2127755_6	PHROG	phrog_11299	NA	unknown function
UHGV-2127755_6	eggNOG-mapper	693746.OBV_18160	NA	NA
UHGV-2127755_6	Structural annotation	PF10666	NA	NA
UHGV-2127755_12	eggNOG-mapper	1009370.ALO_17461	NA	NA
UHGV-2127755_13	KOfam	K03091	sigH; RNA polymerase sporulation-specific sigma factor	NA
UHGV-2127755_13	PHROG	phrog_351	RNA polymerase sigma factor	transcription regulation
UHGV-2127755_13	UniRef90	UniRef90_A0A1I5LBW4	RNA polymerase sigma factor, sigma-70 family	NA
UHGV-2127755_13	eggNOG-mapper	742738.HMPREF9460_00723	Sigma-70, region 4	NA
UHGV-2127755_13	COG	COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	NA
UHGV-2127755_13	Structural annotation	PF07638, MF_00959, NF006147, COG0568	NA	NA
UHGV-2127755_16	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-2127755_16	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-2127755_16	UniRef90	UniRef90_UPI00195896B7	DnaB-like helicase C-terminal domain-containing protein	NA
UHGV-2127755_16	eggNOG-mapper	1408437.JNJN01000010_gene1232	Participates in initiation and elongation during chromosome replication	NA
UHGV-2127755_16	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-2127755_16	COG	COG0305	Replicative DNA helicase	NA
UHGV-2127755_17	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-2127755_17	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-2127755_17	eggNOG-mapper	1235797.C816_01755	Replicative DNA helicase	NA
UHGV-2127755_17	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-2127755_17	COG	COG0305	Replicative DNA helicase	NA
UHGV-2127755_18	PHROG	phrog_5708	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-2127755_18	UniRef90	UniRef90_A0A6A4UXR4	Phage replication initiation	NA
UHGV-2127755_18	eggNOG-mapper	1507.HMPREF0262_00303	DnaD domain protein	NA
UHGV-2127755_18	COG	COG3935	DNA replication protein DnaD	NA
UHGV-2127755_18	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-2127755_19	PHROG	phrog_2113	NA	unknown function
UHGV-2127755_19	eggNOG-mapper	1408437.JNJN01000010_gene1231	NA	NA
UHGV-2127755_20	UniRef90	UniRef90_A0A417NGM9	DNA-binding protein	NA
UHGV-2127755_20	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-2127755_20	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-2127755_20	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-2127755_20	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-2127755_21	PHROG	phrog_17740	NA	unknown function
UHGV-2127755_21	eggNOG-mapper	198467.NP92_14535	NA	NA
UHGV-2127755_21	Structural annotation	PF13560, COG3423	NA	NA
UHGV-2127755_22	UniRef90	UniRef90_A0A350H4E6	HTH cro/C1-type domain-containing protein	NA
UHGV-2127755_22	eggNOG-mapper	742738.HMPREF9460_01397	NA	NA
UHGV-2127755_23	KOfam	K14059	int; integrase	NA
UHGV-2127755_23	PHROG	phrog_1	integrase	integration and excision
UHGV-2127755_23	UniRef90	UniRef90_UPI001F33A9B4	site-specific integrase	NA
UHGV-2127755_23	eggNOG-mapper	877414.ATWA01000018_gene2094	Phage integrase family	NA
UHGV-2127755_23	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-2127755_23	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2127755_23	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2127755_23	Structural annotation	PF00589, PF02920, PF14659, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-2127755_24	Pfam	PF11950	NA	DUF3467
UHGV-2127755_25	Structural annotation	PF18812, COG2929	NA	NA
UHGV-2127755_26	PHROG	phrog_36767	NA	unknown function
UHGV-2127755_26	Structural annotation	PF10049, COG5428	NA	NA