UHGV-2128337

Genome information

Genome length 33,621 bps

CDS count 50

Completeness 79.26% (medium-quality)

geNomad score 0.9811

Prediction confidence Confident

Genome information
Genome ID	UHGV-2128337
vOTU ID	vOTU-026692
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029716\|Ga0245260_1000194\|provirus_90293_123913
BioSample	SAMEA3449311
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	79.26% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9811
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	47.18
Jumbo phage	No

Genome content
Genome length	33,621 bps
GC content	53.14%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	92.02%
Average CDS length	622.08 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2128337_1	UniRef90	UniRef90_UPI001F3A29DB	plasmid recombination protein	NA
UHGV-2128337_1	eggNOG-mapper	500632.CLONEX_02768	NA	NA
UHGV-2128337_1	Pfam	PF01076	Plasmid recombination enzyme	Mob_Pre
UHGV-2128337_1	NCBIFam	NF041497.1	MobV family relaxase	NA
UHGV-2128337_1	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-2128337_1	Structural annotation	PF01076, NF041497, COG3843	NA	NA
UHGV-2128337_2	KOfam	K07505	repA; regulatory protein RepA	NA
UHGV-2128337_2	PHROG	phrog_906	DNA polymerase/primase	DNA, RNA and nucleotide metabolism
UHGV-2128337_2	UniRef90	UniRef90_UPI001C104F32	AAA family ATPase	NA
UHGV-2128337_2	eggNOG-mapper	411473.RUMCAL_02655	AAA domain	NA
UHGV-2128337_2	Pfam	PF13481	AAA domain	AAA_25
UHGV-2128337_2	COG	COG3598	RecA-family ATPase	NA
UHGV-2128337_2	Structural annotation	PF03796, MF_01498, NF006443, TIGR02719, COG3598	NA	NA
UHGV-2128337_3	UniRef90	UniRef90_R5RXT1	HTH_17 domain-containing protein	NA
UHGV-2128337_3	eggNOG-mapper	693746.OBV_30680	Helix-turn-helix domain	NA
UHGV-2128337_3	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-2128337_3	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-2128337_4	UniRef90	UniRef90_UPI001C0F780F	NA	NA
UHGV-2128337_4	eggNOG-mapper	203119.Cthe_3235	NA	NA
UHGV-2128337_4	Pfam	PF19553	NA	DUF6076
UHGV-2128337_5	KOfam	K14059	int; integrase	NA
UHGV-2128337_5	PHROG	phrog_1	integrase	integration and excision
UHGV-2128337_5	UniRef90	UniRef90_A0A416Z9M6	Site-specific integrase	NA
UHGV-2128337_5	eggNOG-mapper	877414.ATWA01000018_gene2094	Phage integrase family	NA
UHGV-2128337_5	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-2128337_5	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2128337_5	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2128337_5	Structural annotation	PF00589, PF02920, PF14659, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-2128337_6	eggNOG-mapper	1232443.BAIA02000078_gene6	NA	NA
UHGV-2128337_7	PHROG	phrog_28802	NA	unknown function
UHGV-2128337_7	eggNOG-mapper	476272.RUMHYD_01772	NA	NA
UHGV-2128337_8	PHROG	phrog_20016	NA	unknown function
UHGV-2128337_8	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-2128337_8	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-2128337_8	Structural annotation	PF18573, NF033147	NA	NA
UHGV-2128337_10	PHROG	phrog_16490	NA	unknown function
UHGV-2128337_10	eggNOG-mapper	658655.HMPREF0988_00917	NA	NA
UHGV-2128337_11	PHROG	phrog_22984	NA	unknown function
UHGV-2128337_12	PHROG	phrog_21718	NA	unknown function
UHGV-2128337_12	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-2128337_13	PHROG	phrog_3754	NA	unknown function
UHGV-2128337_13	eggNOG-mapper	1226322.HMPREF1545_00073	NA	NA
UHGV-2128337_15	UniRef90	UniRef90_A0A8D9PDQ3	ECF sigma factor	NA
UHGV-2128337_15	Structural annotation	PF08281, MF_00674, NF041727, COG1342	NA	NA
UHGV-2128337_16	PHROG	phrog_21357	endolysin	lysis
UHGV-2128337_16	UniRef90	UniRef90_R5SN87	Peptidase C51 domain-containing protein	NA
UHGV-2128337_16	eggNOG-mapper	1007096.BAGW01000022_gene2648	CHAP domain	NA
UHGV-2128337_16	Pfam	PF05257	CHAP domain	CHAP
UHGV-2128337_16	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-2128337_16	Structural annotation	TIGR02594	NA	NA
UHGV-2128337_17	PHROG	phrog_13256	NA	unknown function
UHGV-2128337_17	eggNOG-mapper	1226322.HMPREF1545_00132	NA	NA
UHGV-2128337_19	PHROG	phrog_937	hemolysin	other
UHGV-2128337_19	eggNOG-mapper	1519439.JPJG01000023_gene533	NA	NA
UHGV-2128337_20	PHROG	phrog_27545	NA	unknown function
UHGV-2128337_20	UniRef90	UniRef90_A0A2V2GQB6	Chitin-binding type-3 domain-containing protein	NA
UHGV-2128337_20	eggNOG-mapper	1519439.JPJG01000060_gene1895	NA	NA
UHGV-2128337_20	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-2128337_20	Structural annotation	PF16170	NA	NA
UHGV-2128337_21	PHROG	phrog_10993	Hoc-like head decoration	head and packaging
UHGV-2128337_21	UniRef90	UniRef90_A0A3D4D8F0	NA	NA
UHGV-2128337_21	eggNOG-mapper	1519439.JPJG01000060_gene1894	NA	NA
UHGV-2128337_21	Pfam	PF19789	NA	DUF6273
UHGV-2128337_21	COG	COG3827	Cell pole-organizing protein PopZ	NA
UHGV-2128337_21	Structural annotation	PF19789, PF18707, NF041825, COG3330	NA	NA
UHGV-2128337_22	PHROG	phrog_21962	tail protein	tail
UHGV-2128337_22	UniRef90	UniRef90_A0A858MRS5	Putative tail fiber protein	NA
UHGV-2128337_22	eggNOG-mapper	1519439.JPJG01000060_gene1892	Collagen triple helix repeat (20 copies)	NA
UHGV-2128337_22	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-2128337_24	PHROG	phrog_7121	tail fiber protein	tail
UHGV-2128337_24	UniRef90	UniRef90_R9LW25	Peptidase S74 domain-containing protein	NA
UHGV-2128337_24	eggNOG-mapper	1235797.C816_04179	Chaperone of endosialidase	NA
UHGV-2128337_24	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-2128337_24	Structural annotation	PF07902, NF041249	NA	NA
UHGV-2128337_25	PHROG	phrog_32308	NA	unknown function
UHGV-2128337_25	UniRef90	UniRef90_A0A2Z4QA17	KID repeat-containing protein	NA
UHGV-2128337_25	eggNOG-mapper	1235797.C816_04180	NA	NA
UHGV-2128337_25	Structural annotation	PF21683, TIGR02126, COG4379	NA	NA
UHGV-2128337_26	PHROG	phrog_1194	NA	unknown function
UHGV-2128337_26	eggNOG-mapper	1232443.BAIA02000078_gene17	NA	NA
UHGV-2128337_26	Pfam	PF20458	NA	DUF6711
UHGV-2128337_26	Structural annotation	PF20458, TIGR02126, COG5437	NA	NA
UHGV-2128337_27	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-2128337_27	UniRef90	UniRef90_A0A810PX76	Phage tail tape measure protein	NA
UHGV-2128337_27	eggNOG-mapper	693746.OBV_18190	domain protein	NA
UHGV-2128337_27	COG	COG1511	NA	NA
UHGV-2128337_27	Structural annotation	PF05546, TIGR02559	NA	NA
UHGV-2128337_28	PHROG	phrog_17658	NA	unknown function
UHGV-2128337_28	UniRef90	UniRef90_A0A316PG91	zinc_ribbon_2 domain-containing protein	NA
UHGV-2128337_28	eggNOG-mapper	768710.DesyoDRAFT_1122	NA	NA
UHGV-2128337_28	Structural annotation	PF18116, COG3402	NA	NA
UHGV-2128337_29	PHROG	phrog_706	NA	unknown function
UHGV-2128337_29	UniRef90	UniRef90_UPI001D069FB9	Gp15 family bacteriophage protein	NA
UHGV-2128337_29	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-2128337_29	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-2128337_29	Structural annotation	PF06854	NA	NA
UHGV-2128337_30	PHROG	phrog_11299	NA	unknown function
UHGV-2128337_30	eggNOG-mapper	693746.OBV_18160	NA	NA
UHGV-2128337_30	Structural annotation	PF10666	NA	NA
UHGV-2128337_31	PHROG	phrog_3099	NA	unknown function
UHGV-2128337_31	eggNOG-mapper	1232443.BAIA02000078_gene23	NA	NA
UHGV-2128337_31	Structural annotation	TIGR02126	NA	NA
UHGV-2128337_32	PHROG	phrog_3266	tail completion	connector
UHGV-2128337_32	eggNOG-mapper	1232443.BAIA02000078_gene24	NA	NA
UHGV-2128337_32	Structural annotation	PF12691	NA	NA
UHGV-2128337_33	PHROG	phrog_556	minor head protein	head and packaging
UHGV-2128337_33	UniRef90	UniRef90_UPI00195E1497	minor capsid protein	NA
UHGV-2128337_33	eggNOG-mapper	1226322.HMPREF1545_00054	Minor capsid protein	NA
UHGV-2128337_33	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-2128337_33	Structural annotation	PF11114	NA	NA
UHGV-2128337_34	PHROG	phrog_3366	NA	unknown function
UHGV-2128337_34	eggNOG-mapper	1226322.HMPREF1545_00053	NA	NA
UHGV-2128337_34	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-2128337_35	PHROG	phrog_541	head-tail adaptor	connector
UHGV-2128337_35	eggNOG-mapper	642492.Clole_0822	NA	NA
UHGV-2128337_36	PHROG	phrog_10	major head protein	head and packaging
UHGV-2128337_36	UniRef90	UniRef90_A0A2U1BEF2	HK97 family phage major capsid protein	NA
UHGV-2128337_36	eggNOG-mapper	1226322.HMPREF1545_00050	Phage capsid family	NA
UHGV-2128337_36	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2128337_36	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2128337_36	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2128337_36	Structural annotation	PF05065, PF13620, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2128337_37	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-2128337_37	eggNOG-mapper	1226322.HMPREF1545_00049	NA	NA
UHGV-2128337_38	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2128337_38	UniRef90	UniRef90_UPI001D080D49	phage minor capsid protein	NA
UHGV-2128337_38	eggNOG-mapper	1226322.HMPREF1545_00046	Phage minor capsid protein 2	NA
UHGV-2128337_38	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2128337_38	COG	COG2369	NA	NA
UHGV-2128337_38	Structural annotation	PF06152	NA	NA
UHGV-2128337_39	PHROG	phrog_8680	NA	unknown function
UHGV-2128337_39	UniRef90	UniRef90_A0A3R6D7I3	NA	NA
UHGV-2128337_39	eggNOG-mapper	411470.RUMGNA_02208	NA	NA
UHGV-2128337_39	Pfam	PF14386	NA	DUF4417
UHGV-2128337_39	Structural annotation	PF14386	NA	NA
UHGV-2128337_41	PHROG	phrog_533	portal protein	head and packaging
UHGV-2128337_41	UniRef90	UniRef90_UPI0006C81717	phage portal protein	NA
UHGV-2128337_41	eggNOG-mapper	1226322.HMPREF1545_00044	NA	NA
UHGV-2128337_41	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2128337_41	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-2128337_42	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2128337_42	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-2128337_42	UniRef90	UniRef90_A0A2U1BEH4	PBSX family phage terminase large subunit	NA
UHGV-2128337_42	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-2128337_42	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-2128337_42	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-2128337_42	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2128337_42	COG	COG1783	Phage terminase large subunit	NA
UHGV-2128337_42	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-2128337_43	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-2128337_43	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-2128337_43	UniRef90	UniRef90_UPI001D05F697	terminase small subunit	NA
UHGV-2128337_43	eggNOG-mapper	697281.Mahau_0566	Terminase Small Subunit	NA
UHGV-2128337_43	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-2128337_43	COG	COG3728	Phage terminase, small subunit	NA
UHGV-2128337_43	Structural annotation	PF03592, COG3728	NA	NA
UHGV-2128337_44	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2128337_44	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2128337_44	UniRef90	UniRef90_A0A8D9PDC4	Repressor protein	NA
UHGV-2128337_44	eggNOG-mapper	1226322.HMPREF1545_00039	sequence-specific DNA binding	NA
UHGV-2128337_44	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2128337_44	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2128337_44	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-2128337_45	PHROG	phrog_236	nucleotide kinase	other
UHGV-2128337_45	UniRef90	UniRef90_UPI001CA83796	NA	NA
UHGV-2128337_45	eggNOG-mapper	1033743.CAES01000020_gene3148	NA	NA
UHGV-2128337_45	Pfam	PF11753	NA	DUF3310
UHGV-2128337_47	eggNOG-mapper	552398.HMPREF0866_03131	NA	NA
UHGV-2128337_49	UniRef90	UniRef90_F4XGQ3	NA	NA
UHGV-2128337_49	eggNOG-mapper	552398.HMPREF0866_02803	YodL-like	NA
UHGV-2128337_49	Pfam	PF14191	YodL-like	YodL
UHGV-2128337_49	Pfam	PF14195	NA	DUF4316
UHGV-2128337_49	COG	COG4227	Antirestriction protein ArdC	NA
UHGV-2128337_50	eggNOG-mapper	1123263.AUKY01000003_gene292	Involved in chromosome partitioning	NA
UHGV-2128337_50	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA