UHGV-2128478

Genome information

Genome length 36,589 bps

CDS count 48

Completeness 97.31% (high-quality)

geNomad score 0.9696

Prediction confidence Confident

Genome information
Genome ID	UHGV-2128478
vOTU ID	vOTU-014431
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029610\|Ga0245132_100021\|provirus_42658_85756
BioSample	SAMEA3449184
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.31% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	18
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9696
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	52.66
Jumbo phage	No

Genome content
Genome length	36,589 bps
GC content	52.64%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	48
CDS density	93.96%
Average CDS length	719.81 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2128478_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-2128478_1	PHROG	phrog_95	integrase	integration and excision
UHGV-2128478_1	UniRef90	UniRef90_UPI00093CA09A	recombinase family protein	NA
UHGV-2128478_1	eggNOG-mapper	1120746.CCNL01000010_gene1415	recombinase activity	NA
UHGV-2128478_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-2128478_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-2128478_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-2128478_1	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-2128478_2	UniRef90	UniRef90_UPI0010658721	NA	NA
UHGV-2128478_2	eggNOG-mapper	1508644.SFBmNL_00400	NA	NA
UHGV-2128478_2	Pfam	PF10387	NA	DUF2442
UHGV-2128478_2	Structural annotation	PF10387	NA	NA
UHGV-2128478_3	PHROG	phrog_14333	NA	unknown function
UHGV-2128478_3	UniRef90	UniRef90_UPI0010668891	NA	NA
UHGV-2128478_3	eggNOG-mapper	1508644.SFBmNL_01555	NA	NA
UHGV-2128478_3	Pfam	PF13711	NA	DUF4160
UHGV-2128478_3	Structural annotation	PF13711	NA	NA
UHGV-2128478_5	UniRef90	UniRef90_F5L9B9	Tetratricopeptide TPR_1 repeat-containing protein	NA
UHGV-2128478_5	eggNOG-mapper	986075.CathTA2_2424	NA	NA
UHGV-2128478_6	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-2128478_6	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-2128478_6	UniRef90	UniRef90_UPI0019688BEB	transcriptional repressor LexA	NA
UHGV-2128478_6	eggNOG-mapper	1121423.JONT01000002_gene2372	Peptidase S24-like	NA
UHGV-2128478_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2128478_6	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-2128478_6	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-2128478_6	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-2128478_7	UniRef90	UniRef90_A0A3C1XB18	NA	NA
UHGV-2128478_7	eggNOG-mapper	1121335.Clst_0370	NA	NA
UHGV-2128478_7	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-2128478_7	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-2128478_13	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-2128478_13	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2128478_13	UniRef90	UniRef90_A0A7G9WF72	AAA family ATPase	NA
UHGV-2128478_13	eggNOG-mapper	1444309.JAQG01000013_gene1928	nuclear chromosome segregation	NA
UHGV-2128478_13	Pfam	PF13476	AAA domain	AAA_23
UHGV-2128478_13	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-2128478_13	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-2128478_15	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-2128478_15	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2128478_15	UniRef90	UniRef90_R6QSG7	Recombinational DNA repair protein RecT (Prophage associated)	NA
UHGV-2128478_15	eggNOG-mapper	1111134.HMPREF1253_0395	RecT family	NA
UHGV-2128478_15	Pfam	PF03837	RecT family	RecT
UHGV-2128478_15	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-2128478_15	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-2128478_15	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-2128478_16	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-2128478_16	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-2128478_16	UniRef90	UniRef90_UPI00190EB189	MBL fold metallo-hydrolase	NA
UHGV-2128478_16	eggNOG-mapper	1444309.JAQG01000013_gene1930	Metallo-beta-lactamase superfamily	NA
UHGV-2128478_16	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-2128478_16	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-2128478_16	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-2128478_17	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2128478_17	UniRef90	UniRef90_UPI00067E73A4	NA	NA
UHGV-2128478_17	eggNOG-mapper	1507.HMPREF0262_00435	NA	NA
UHGV-2128478_17	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-2128478_17	COG	COG3935	DNA replication protein DnaD	NA
UHGV-2128478_17	Structural annotation	PF14297	NA	NA
UHGV-2128478_18	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-2128478_18	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2128478_18	UniRef90	UniRef90_A0A3D0M1J0	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-2128478_18	eggNOG-mapper	411459.RUMOBE_01038	COG COG4570 Holliday junction resolvase	NA
UHGV-2128478_18	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-2128478_18	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-2128478_18	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-2128478_21	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2128478_21	UniRef90	UniRef90_A0A3A9EZN6	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-2128478_21	eggNOG-mapper	875454.BAEW01000002_gene486	NA	NA
UHGV-2128478_21	Structural annotation	PF02996	NA	NA
UHGV-2128478_22	PHROG	phrog_13999	NA	unknown function
UHGV-2128478_22	eggNOG-mapper	1366055.S5MA08_9CAUD	NA	NA
UHGV-2128478_23	PHROG	phrog_29177	NA	unknown function
UHGV-2128478_23	UniRef90	UniRef90_UPI001AE4C5CF	TIR domain-containing protein	NA
UHGV-2128478_23	Pfam	PF13676	TIR domain	TIR_2
UHGV-2128478_25	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-2128478_25	UniRef90	UniRef90_UPI001F487344	DNA-packaging protein	NA
UHGV-2128478_25	eggNOG-mapper	397290.C810_05185	DNA-packaging protein gp3	NA
UHGV-2128478_25	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-2128478_26	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2128478_26	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-2128478_26	UniRef90	UniRef90_UPI001F3FE6C5	terminase family protein	NA
UHGV-2128478_26	eggNOG-mapper	1449050.JNLE01000003_gene3895	phage terminase, large subunit, PBSX family	NA
UHGV-2128478_26	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-2128478_26	COG	COG1783	Phage terminase large subunit	NA
UHGV-2128478_26	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-2128478_27	PHROG	phrog_533	portal protein	head and packaging
UHGV-2128478_27	UniRef90	UniRef90_UPI001F31BB47	phage portal protein	NA
UHGV-2128478_27	eggNOG-mapper	645991.Sgly_0336	NA	NA
UHGV-2128478_27	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-2128478_28	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2128478_28	UniRef90	UniRef90_UPI001F16FD58	phage minor capsid protein	NA
UHGV-2128478_28	eggNOG-mapper	641112.ACOK01000073_gene2890	NA	NA
UHGV-2128478_28	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2128478_28	COG	COG2369	NA	NA
UHGV-2128478_28	Structural annotation	PF06152, PF12636	NA	NA
UHGV-2128478_31	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-2128478_31	UniRef90	UniRef90_UPI001F379BB0	phage scaffolding protein	NA
UHGV-2128478_31	eggNOG-mapper	411471.SUBVAR_06994	Phage minor structural protein GP20	NA
UHGV-2128478_31	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-2128478_31	Structural annotation	PF06810	NA	NA
UHGV-2128478_32	PHROG	phrog_283	major head protein	head and packaging
UHGV-2128478_32	UniRef90	UniRef90_UPI001F262C39	P22 coat protein	NA
UHGV-2128478_32	eggNOG-mapper	1499683.CCFF01000014_gene3908	P22 coat protein - gene protein 5	NA
UHGV-2128478_32	Pfam	PF11651	P22 coat protein - gene protein 5	P22_CoatProtein
UHGV-2128478_32	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-2128478_33	PHROG	phrog_541	head-tail adaptor	connector
UHGV-2128478_33	eggNOG-mapper	665956.HMPREF1032_03064	NA	NA
UHGV-2128478_34	Pfam	PF20536	NA	DUF6751
UHGV-2128478_34	Structural annotation	PF20536, TIGR01563, COG1853	NA	NA
UHGV-2128478_35	PHROG	phrog_556	minor head protein	head and packaging
UHGV-2128478_35	UniRef90	UniRef90_UPI001F37068B	minor capsid protein	NA
UHGV-2128478_35	eggNOG-mapper	742723.HMPREF9477_00902	Minor capsid protein	NA
UHGV-2128478_35	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-2128478_35	Structural annotation	PF11114	NA	NA
UHGV-2128478_36	PHROG	phrog_3266	tail completion	connector
UHGV-2128478_36	UniRef90	UniRef90_A0A7G9WJF2	Chloramphenicol resistance protein	NA
UHGV-2128478_36	eggNOG-mapper	428127.EUBDOL_01219	NA	NA
UHGV-2128478_36	Structural annotation	PF12691	NA	NA
UHGV-2128478_37	PHROG	phrog_3099	NA	unknown function
UHGV-2128478_37	eggNOG-mapper	641112.ACOK01000073_gene2900	NA	NA
UHGV-2128478_37	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-2128478_38	PHROG	phrog_4450	NA	unknown function
UHGV-2128478_38	UniRef90	UniRef90_A0A413QHF8	AP endonuclease	NA
UHGV-2128478_38	eggNOG-mapper	931276.Cspa_c07520	NA	NA
UHGV-2128478_38	Pfam	PF20378	NA	DUF6673
UHGV-2128478_38	Structural annotation	PF20378	NA	NA
UHGV-2128478_39	PHROG	phrog_706	NA	unknown function
UHGV-2128478_39	UniRef90	UniRef90_UPI001F174480	bacteriophage Gp15 family protein	NA
UHGV-2128478_39	eggNOG-mapper	903814.ELI_3199	Bacteriophage Gp15 protein	NA
UHGV-2128478_39	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-2128478_39	Structural annotation	PF06854	NA	NA
UHGV-2128478_40	PHROG	phrog_19074	NA	unknown function
UHGV-2128478_40	UniRef90	UniRef90_A0A1G4WU66	Phage tail tape measure protein, TP901 family, core region	NA
UHGV-2128478_40	eggNOG-mapper	411461.DORFOR_01175	phage tail tape measure protein	NA
UHGV-2128478_40	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-2128478_40	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-2128478_40	COG	COG5280	Phage-related minor tail protein	NA
UHGV-2128478_41	UniRef90	UniRef90_A0A352P156	MtfA protein	NA
UHGV-2128478_41	eggNOG-mapper	610130.Closa_0753	phage tail	NA
UHGV-2128478_41	COG	COG4722	Phage-related protein YomH	NA
UHGV-2128478_41	Structural annotation	PF05709, PF02408, TIGR01633, COG4722	NA	NA
UHGV-2128478_42	PHROG	phrog_3558	tail protein	tail
UHGV-2128478_42	UniRef90	UniRef90_UPI001F38EC3D	phage tail protein	NA
UHGV-2128478_42	eggNOG-mapper	1235802.C823_05264	Phage minor structural protein	NA
UHGV-2128478_42	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-2128478_42	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-2128478_42	COG	COG4926	Phage-related protein	NA
UHGV-2128478_42	Structural annotation	PF06605, PF21683, TIGR01665, COG4926	NA	NA
UHGV-2128478_43	PHROG	phrog_372	tail protein	tail
UHGV-2128478_43	UniRef90	UniRef90_UPI001F1AF627	NA	NA
UHGV-2128478_43	eggNOG-mapper	1235799.C818_01005	the current gene model (or a revised gene model) may contain a frame shift	NA
UHGV-2128478_43	Pfam	PF05895	NA	DUF859
UHGV-2128478_43	COG	COG4675	Phage tail collar domain	NA
UHGV-2128478_43	Structural annotation	PF05895, PF15513, MF_04116, NF010681, COG1361	NA	NA
UHGV-2128478_44	UniRef90	UniRef90_A0A3E2B3T2	NA	NA
UHGV-2128478_44	Pfam	PF11192	NA	DUF2977
UHGV-2128478_45	PHROG	phrog_199	holin	lysis
UHGV-2128478_45	UniRef90	UniRef90_UPI001F18BC7F	phage holin family protein	NA
UHGV-2128478_45	eggNOG-mapper	1160721.RBI_I01565	Bacteriophage holin family	NA
UHGV-2128478_45	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-2128478_45	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-2128478_45	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-2128478_45	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-2128478_47	PHROG	phrog_2310	NA	unknown function
UHGV-2128478_48	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2128478_48	PHROG	phrog_3088	amidase	lysis
UHGV-2128478_48	UniRef90	UniRef90_A0A3D3Y0W1	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-2128478_48	eggNOG-mapper	1232446.BAIE02000094_gene1162	n-acetylmuramoyl-l-alanine amidase	NA
UHGV-2128478_48	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-2128478_48	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-2128478_48	Structural annotation	PF01510, PF08239, MF_04111, NF008758, COG5632	NA	NA