UHGV-2129870

Genome information

Genome length 34,255 bps

CDS count 30

Completeness 74.70% (medium-quality)

geNomad score 0.9667

Prediction confidence Confident

Genome information
Genome ID	UHGV-2129870
vOTU ID	vOTU-040315
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029661\|Ga0245258_100561\|provirus_7770_42024
BioSample	SAMEA3449309
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	74.70% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9667
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	65.33
Jumbo phage	No

Genome content
Genome length	34,255 bps
GC content	55.57%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	30
CDS density	96.11%
Average CDS length	1,098.90 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2129870_1	UniRef90	UniRef90_UPI001CCA9055	ATP-binding protein	NA
UHGV-2129870_1	eggNOG-mapper	1131462.DCF50_p135	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex	NA
UHGV-2129870_1	COG	COG0323	DNA mismatch repair ATPase MutL	NA
UHGV-2129870_1	Structural annotation	MF_00505, NF003555, COG0323	NA	NA
UHGV-2129870_2	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-2129870_2	PHROG	phrog_95	integrase	integration and excision
UHGV-2129870_2	UniRef90	UniRef90_A0A7X6Y2N6	Recombinase family protein	NA
UHGV-2129870_2	eggNOG-mapper	1235790.C805_00889	Resolvase, N terminal domain	NA
UHGV-2129870_2	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-2129870_2	Pfam	PF07508	Recombinase	Recombinase
UHGV-2129870_2	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-2129870_2	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-2129870_2	Structural annotation	PF00239, PF07508, PF18822, NF041201, COG1961	NA	NA
UHGV-2129870_3	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-2129870_3	PHROG	phrog_95	integrase	integration and excision
UHGV-2129870_3	UniRef90	UniRef90_A0A1Y4A4X4	Recombinase family protein	NA
UHGV-2129870_3	eggNOG-mapper	411473.RUMCAL_00620	Resolvase, N terminal domain	NA
UHGV-2129870_3	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-2129870_3	Pfam	PF07508	Recombinase	Recombinase
UHGV-2129870_3	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-2129870_3	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-2129870_3	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-2129870_4	PHROG	phrog_2996	NA	unknown function
UHGV-2129870_4	Pfam	PF20612	SHOCT domain	SHOCT_2
UHGV-2129870_4	Structural annotation	PF20612	NA	NA
UHGV-2129870_5	PHROG	phrog_1493	endolysin	lysis
UHGV-2129870_5	UniRef90	UniRef90_A0A1Q6PTR5	PG_binding_1 domain-containing protein	NA
UHGV-2129870_5	eggNOG-mapper	411473.RUMCAL_00214	NLP P60 protein	NA
UHGV-2129870_5	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-2129870_5	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-2129870_5	Structural annotation	PF01471, PF19087, NF041850, TIGR02219, COG3409, COG3103, COG0791	NA	NA
UHGV-2129870_6	PHROG	phrog_199	holin	lysis
UHGV-2129870_6	UniRef90	UniRef90_A0A1Q6PTT3	Holin	NA
UHGV-2129870_6	eggNOG-mapper	1203606.HMPREF1526_00583	toxin secretion phage lysis holin	NA
UHGV-2129870_6	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-2129870_6	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-2129870_6	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-2129870_6	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-2129870_7	eggNOG-mapper	1195236.CTER_2813	Belongs to the glycosyl hydrolase 18 family	NA
UHGV-2129870_7	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-2129870_7	COG	COG3325	Chitinase, GH18 family	NA
UHGV-2129870_8	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-2129870_8	UniRef90	UniRef90_A0A7C6FP44	SH3 domain-containing protein	NA
UHGV-2129870_8	eggNOG-mapper	1408823.AXUS01000025_gene2634	Phage minor structural protein	NA
UHGV-2129870_8	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-2129870_8	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-2129870_8	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-2129870_8	COG	COG4926	Phage-related protein	NA
UHGV-2129870_8	Structural annotation	PF14594, PF06848, TIGR01665, COG4926	NA	NA
UHGV-2129870_9	PHROG	phrog_29016	NA	unknown function
UHGV-2129870_9	UniRef90	UniRef90_A0A1S2EZT5	AlbA_2 domain-containing protein	NA
UHGV-2129870_9	eggNOG-mapper	1285586.H131_21362	Putative DNA-binding domain	NA
UHGV-2129870_9	Pfam	PF04326	Schlafen, AlbA_2	SLFN_AlbA_2
UHGV-2129870_9	COG	COG2865	Predicted transcriptional regulator, contains HTH domain	NA
UHGV-2129870_10	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-2129870_10	UniRef90	UniRef90_A0A7C6FS63	Phage tail protein	NA
UHGV-2129870_10	eggNOG-mapper	272562.CA_C0062	tail component	NA
UHGV-2129870_10	COG	COG4722	Phage-related protein YomH	NA
UHGV-2129870_10	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-2129870_11	KOfam	K12478	EEA1; early endosome antigen 1	NA
UHGV-2129870_11	PHROG	phrog_13339	tail length tape measure protein	tail
UHGV-2129870_11	UniRef90	UniRef90_A0A1Q6PTR6	Phage tail tape measure protein	NA
UHGV-2129870_11	eggNOG-mapper	1476973.JMMB01000007_gene1771	Phage-related minor tail protein	NA
UHGV-2129870_11	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-2129870_11	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-2129870_11	COG	COG5283	Phage-related tail protein	NA
UHGV-2129870_11	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-2129870_14	Pfam	PF20118	NA	DUF6508
UHGV-2129870_15	KOfam	K11044	spyA; C3 family ADP-ribosyltransferase [EC:2.4.2.-]	NA
UHGV-2129870_15	PHROG	phrog_3895	ADP-ribosyltransferase exoenzyme toxin	moron, auxiliary metabolic gene and host takeover
UHGV-2129870_15	UniRef90	UniRef90_A0A081BKY7	Clostridial binary toxin A	NA
UHGV-2129870_15	eggNOG-mapper	1291743.LOSG293_510030	NAD:arginine ADP-ribosyltransferase	NA
UHGV-2129870_15	Pfam	PF03496	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
UHGV-2129870_15	COG	COG2369	NA	NA
UHGV-2129870_15	Structural annotation	PF03496, MF_04142, NF041404	NA	NA
UHGV-2129870_16	PHROG	phrog_8680	NA	unknown function
UHGV-2129870_16	UniRef90	UniRef90_A0A373KTP5	NA	NA
UHGV-2129870_16	eggNOG-mapper	411470.RUMGNA_02208	NA	NA
UHGV-2129870_16	Pfam	PF14386	NA	DUF4417
UHGV-2129870_16	Structural annotation	PF14386	NA	NA
UHGV-2129870_17	PHROG	phrog_88	major tail protein	tail
UHGV-2129870_17	UniRef90	UniRef90_A0A7C6BMC6	Phage tail protein	NA
UHGV-2129870_17	eggNOG-mapper	1382315.JPOI01000001_gene276	Phage major tail protein phi13	NA
UHGV-2129870_17	Pfam	PF04630	Phage tail tube protein	Phage_TTP_1
UHGV-2129870_17	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-2129870_17	COG	COG5276	NA	NA
UHGV-2129870_17	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-2129870_18	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2129870_18	eggNOG-mapper	1262449.CP6013_1045	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-2129870_18	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-2129870_18	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-2129870_18	Structural annotation	PF04883, TIGR01725	NA	NA
UHGV-2129870_19	Structural annotation	PF05657	NA	NA
UHGV-2129870_20	PHROG	phrog_25	head closure Hc1	connector
UHGV-2129870_20	UniRef90	UniRef90_A0A7X7FI16	Phage head closure protein	NA
UHGV-2129870_20	eggNOG-mapper	1408424.JHYI01000032_gene3819	Phage head-tail joining protein	NA
UHGV-2129870_20	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-2129870_20	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-2129870_20	COG	COG5614	Phage head-tail adaptor	NA
UHGV-2129870_20	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-2129870_21	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-2129870_21	UniRef90	UniRef90_A0A7X7FKE4	Phage gp6-like head-tail connector protein	NA
UHGV-2129870_21	eggNOG-mapper	1121116.KB894776_gene1858	Phage gp6-like head-tail connector protein	NA
UHGV-2129870_21	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-2129870_21	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-2129870_21	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-2129870_22	PHROG	phrog_12102	NA	unknown function
UHGV-2129870_22	UniRef90	UniRef90_A0A7X7FI45	Head fiber protein	NA
UHGV-2129870_22	eggNOG-mapper	665956.HMPREF1032_02264	NA	NA
UHGV-2129870_22	Pfam	PF11133	Head fiber protein	Phage_head_fibr
UHGV-2129870_23	PHROG	phrog_10	major head protein	head and packaging
UHGV-2129870_23	UniRef90	UniRef90_A0A1Q6PTS2	Capsid protein	NA
UHGV-2129870_23	eggNOG-mapper	696281.Desru_3549	TIGRFAM phage major capsid protein, HK97 family	NA
UHGV-2129870_23	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2129870_23	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2129870_23	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2129870_23	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2129870_24	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-2129870_24	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-2129870_24	UniRef90	UniRef90_A0A1Q6PTQ8	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-2129870_24	eggNOG-mapper	1216932.CM240_0674	Belongs to the peptidase S14 family	NA
UHGV-2129870_24	Pfam	PF00574	Clp protease	CLP_protease
UHGV-2129870_24	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-2129870_24	Structural annotation	PF00574, MF_00444, NF011089, COG0740	NA	NA
UHGV-2129870_25	PHROG	phrog_12	portal protein	head and packaging
UHGV-2129870_25	UniRef90	UniRef90_A0A1Q6PTQ2	Phage portal protein	NA
UHGV-2129870_25	eggNOG-mapper	1121289.JHVL01000007_gene2755	Phage portal protein, HK97 family	NA
UHGV-2129870_25	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2129870_25	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-2129870_25	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2129870_25	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-2129870_26	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-2129870_26	PHROG	phrog_2323	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2129870_26	UniRef90	UniRef90_E7GJY4	Phage endonuclease	NA
UHGV-2129870_26	eggNOG-mapper	742740.HMPREF9474_01229	HNH endonuclease	NA
UHGV-2129870_26	Pfam	PF01844	HNH endonuclease	HNH
UHGV-2129870_26	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2129870_26	Structural annotation	PF01844, COG1403	NA	NA
UHGV-2129870_27	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2129870_27	UniRef90	UniRef90_A0A1Q6PTP4	Terminase	NA
UHGV-2129870_27	eggNOG-mapper	1408324.JNJK01000006_gene1378	Phage Terminase	NA
UHGV-2129870_27	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-2129870_27	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2129870_27	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2129870_27	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-2129870_28	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-2129870_28	UniRef90	UniRef90_A0A1Q6PU38	Terminase	NA
UHGV-2129870_28	eggNOG-mapper	1209989.TepiRe1_2607	Phage terminase, small subunit	NA
UHGV-2129870_28	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-2129870_28	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-2129870_28	COG	COG3747	Phage terminase, small subunit	NA
UHGV-2129870_28	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-2129870_29	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-2129870_29	PHROG	phrog_498	DNA methyltransferase	other
UHGV-2129870_29	UniRef90	UniRef90_A0A1Q6PTS8	Methyltransferase	NA
UHGV-2129870_29	eggNOG-mapper	1121289.JHVL01000007_gene2766	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-2129870_29	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-2129870_29	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-2129870_29	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-2129870_29	COG	COG0863	DNA modification methylase	NA
UHGV-2129870_29	Structural annotation	PF01555, PF02195, MF_02015, MF_01872, NF010253, TIGR04285, COG0863, COG1475	NA	NA
UHGV-2129870_30	KOfam	K04095	fic; cell filamentation protein	NA
UHGV-2129870_30	PHROG	phrog_5978	NA	unknown function
UHGV-2129870_30	UniRef90	UniRef90_A0A1Q6PTN9	Cell filamentation protein Fic	NA
UHGV-2129870_30	eggNOG-mapper	1111454.HMPREF1250_1748	Fic/DOC family	NA
UHGV-2129870_30	Pfam	PF02661	Fic/DOC family	Fic
UHGV-2129870_30	COG	COG3177	Fic family protein	NA
UHGV-2129870_30	Structural annotation	PF02661, PF07106, TIGR02613, NF000244, COG3177	NA	NA