UHGV-2129953

Genome information

Genome length 33,614 bps

CDS count 48

Completeness 96.49% (high-quality)

geNomad score 0.9671

Prediction confidence Confident

Genome information
Genome ID	UHGV-2129953
vOTU ID	vOTU-010410
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029718\|Ga0245237_1000612\|provirus_3_38976
BioSample	NA
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	96.49% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	12
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9671
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	46.23
Jumbo phage	No

Genome content
Genome length	33,614 bps
GC content	55.58%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	48
CDS density	92.66%
Average CDS length	651.69 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2129953_1	KOfam	K07504	K07504; predicted type IV restriction endonuclease	NA
UHGV-2129953_1	PHROG	phrog_4225	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2129953_1	UniRef90	UniRef90_UPI001958FD57	type I restriction endonuclease	NA
UHGV-2129953_1	eggNOG-mapper	742738.HMPREF9460_04035	Type I restriction enzyme R protein N terminus (HSDR_N)	NA
UHGV-2129953_1	Pfam	PF04313	Type I restriction enzyme R protein N terminus (HSDR_N)	HSDR_N
UHGV-2129953_1	COG	COG4748	NA	NA
UHGV-2129953_1	Structural annotation	PF13588, TIGR04256, COG4748	NA	NA
UHGV-2129953_2	KOfam	K14059	int; integrase	NA
UHGV-2129953_2	PHROG	phrog_1	integrase	integration and excision
UHGV-2129953_2	UniRef90	UniRef90_UPI001958A27A	site-specific integrase	NA
UHGV-2129953_2	eggNOG-mapper	1203606.HMPREF1526_00215	Phage integrase family	NA
UHGV-2129953_2	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-2129953_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2129953_2	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2129953_2	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-2129953_3	PHROG	phrog_5978	NA	unknown function
UHGV-2129953_3	UniRef90	UniRef90_A0A372UZA0	Fic family protein	NA
UHGV-2129953_3	eggNOG-mapper	936375.HMPREF1152_1541	Filamentation induced by cAMP protein fic	NA
UHGV-2129953_3	Pfam	PF02661	Fic/DOC family	Fic
UHGV-2129953_3	COG	COG3177	Fic family protein	NA
UHGV-2129953_3	Structural annotation	PF07183, MF_01911, NF040876, COG3177	NA	NA
UHGV-2129953_5	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-2129953_5	PHROG	phrog_1373	transcriptional regulator	transcription regulation
UHGV-2129953_5	UniRef90	UniRef90_UPI00051ABD2F	helix-turn-helix domain-containing protein	NA
UHGV-2129953_5	eggNOG-mapper	1280688.AUJB01000009_gene1936	Helix-turn-helix XRE-family like proteins	NA
UHGV-2129953_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2129953_5	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-2129953_6	Structural annotation	PF05973, TIGR02683, COG4683	NA	NA
UHGV-2129953_7	Structural annotation	PF21227	NA	NA
UHGV-2129953_8	PHROG	phrog_4611	minor head protein	head and packaging
UHGV-2129953_8	UniRef90	UniRef90_UPI001EDE047F	phage minor capsid protein	NA
UHGV-2129953_8	eggNOG-mapper	679192.HMPREF9013_1325	NA	NA
UHGV-2129953_8	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2129953_9	PHROG	phrog_1914	NA	unknown function
UHGV-2129953_9	UniRef90	UniRef90_R6DVV5	Predicted Zn peptidase	NA
UHGV-2129953_9	eggNOG-mapper	1160721.RBI_I01604	NA	NA
UHGV-2129953_9	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-2129953_9	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-2129953_9	Structural annotation	PF06114, COG2856	NA	NA
UHGV-2129953_11	UniRef90	UniRef90_A0A1Y4RCY6	NA	NA
UHGV-2129953_11	eggNOG-mapper	445974.CLORAM_02965	NA	NA
UHGV-2129953_11	Pfam	PF20432	Antitoxin Xre-like helix-turn-helix domain	Xre-like-HTH
UHGV-2129953_11	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-2129953_13	PHROG	phrog_3240	NA	unknown function
UHGV-2129953_13	eggNOG-mapper	320841.Q4ZC34_9CAUD	NA	NA
UHGV-2129953_17	KOfam	K06284	abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes	NA
UHGV-2129953_17	PHROG	phrog_4681	antitoxin from a toxin-antitoxin system	moron, auxiliary metabolic gene and host takeover
UHGV-2129953_17	UniRef90	UniRef90_UPI000374C2E3	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA
UHGV-2129953_17	eggNOG-mapper	1157490.EL26_11905	Antidote-toxin recognition MazE, bacterial antitoxin	NA
UHGV-2129953_17	Pfam	PF04014	Antidote-toxin recognition MazE, bacterial antitoxin	MazE_antitoxin
UHGV-2129953_17	NCBIFam	TIGR01439.1	transcriptional regulator, AbrB family	NA
UHGV-2129953_17	COG	COG2002	Bifunctional DNA-binding transcriptional regulator of stationary/sporulation/toxin gene expression and antitoxin component of the YhaV-PrlF toxin-antitoxin module	NA
UHGV-2129953_17	Structural annotation	PF15937, TIGR01439, NF004424, COG2002	NA	NA
UHGV-2129953_20	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2129953_20	eggNOG-mapper	411470.RUMGNA_02047	NA	NA
UHGV-2129953_20	Structural annotation	PF21578	NA	NA
UHGV-2129953_21	KOfam	K03700	recU; recombination protein U	NA
UHGV-2129953_21	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2129953_21	UniRef90	UniRef90_A0A1H0W5Y9	Holliday junction resolvase RecU	NA
UHGV-2129953_21	eggNOG-mapper	537013.CLOSTMETH_01720	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	NA
UHGV-2129953_21	Pfam	PF03838	Recombination protein U	RecU
UHGV-2129953_21	COG	COG3331	Penicillin-binding protein-related factor A, putative recombinase	NA
UHGV-2129953_21	Structural annotation	PF03838, MF_00130, NF002581, COG3331	NA	NA
UHGV-2129953_22	eggNOG-mapper	1232449.BAHV02000016_gene1829	NA	NA
UHGV-2129953_23	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-2129953_23	PHROG	phrog_116	DNA methyltransferase	other
UHGV-2129953_23	UniRef90	UniRef90_A0A350THX9	DNA (cytosine-5-)-methyltransferase	NA
UHGV-2129953_23	eggNOG-mapper	1121334.KB911073_gene1852	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-2129953_23	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-2129953_23	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-2129953_23	COG	COG0270	DNA-cytosine methylase	NA
UHGV-2129953_23	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-2129953_24	PHROG	phrog_5781	NA	unknown function
UHGV-2129953_24	UniRef90	UniRef90_A0A810Q4L2	NA	NA
UHGV-2129953_24	eggNOG-mapper	573061.Clocel_3558	NA	NA
UHGV-2129953_24	Pfam	PF14359	NA	DUF4406
UHGV-2129953_24	COG	COG3613	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-2129953_24	Structural annotation	PF14359, MF_03036, TIGR03646, COG3613	NA	NA
UHGV-2129953_25	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2129953_25	eggNOG-mapper	428125.CLOLEP_01806	NA	NA
UHGV-2129953_25	Pfam	PF07374	NA	DUF1492
UHGV-2129953_25	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-2129953_26	Structural annotation	PF10922, MF_00839	NA	NA
UHGV-2129953_27	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2129953_27	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-2129953_27	UniRef90	UniRef90_A0A416S378	PBSX family phage terminase large subunit	NA
UHGV-2129953_27	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-2129953_27	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-2129953_27	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-2129953_27	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-2129953_27	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2129953_27	COG	COG1783	Phage terminase large subunit	NA
UHGV-2129953_27	Structural annotation	PF04466, PF17288, PF03592, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-2129953_28	PHROG	phrog_1233	NA	unknown function
UHGV-2129953_28	eggNOG-mapper	1415774.U728_832	NA	NA
UHGV-2129953_28	Structural annotation	PF13058	NA	NA
UHGV-2129953_29	PHROG	phrog_533	portal protein	head and packaging
UHGV-2129953_29	UniRef90	UniRef90_A0A173TY48	Phage portal protein, putative, A118 family	NA
UHGV-2129953_29	eggNOG-mapper	33035.JPJF01000106_gene3135	phage minor capsid protein	NA
UHGV-2129953_29	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-2129953_30	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2129953_30	UniRef90	UniRef90_A0A3D4T830	Phage capsid protein	NA
UHGV-2129953_30	eggNOG-mapper	476272.RUMHYD_01761	Phage minor capsid protein 2	NA
UHGV-2129953_30	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2129953_30	Pfam	PF21814	NA	DUF6883
UHGV-2129953_30	COG	COG2369	NA	NA
UHGV-2129953_30	Structural annotation	PF06152, PF21814	NA	NA
UHGV-2129953_31	UniRef90	UniRef90_UPI000C08D045	NA	NA
UHGV-2129953_32	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-2129953_32	UniRef90	UniRef90_UPI001C0EBA51	phage scaffolding protein	NA
UHGV-2129953_32	eggNOG-mapper	1539298.JO41_08210	Phage minor structural protein GP20	NA
UHGV-2129953_32	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-2129953_32	Structural annotation	PF06810	NA	NA
UHGV-2129953_33	PHROG	phrog_267	major head protein	head and packaging
UHGV-2129953_33	eggNOG-mapper	1235799.C818_04223	NA	NA
UHGV-2129953_33	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-2129953_34	PHROG	phrog_541	head-tail adaptor	connector
UHGV-2129953_34	eggNOG-mapper	476272.RUMHYD_01778	NA	NA
UHGV-2129953_35	PHROG	phrog_3366	NA	unknown function
UHGV-2129953_35	Structural annotation	PF20536, COG5614	NA	NA
UHGV-2129953_36	PHROG	phrog_556	minor head protein	head and packaging
UHGV-2129953_36	UniRef90	UniRef90_A0A1H7MNM8	Minor capsid protein	NA
UHGV-2129953_36	eggNOG-mapper	476272.RUMHYD_01780	NA	NA
UHGV-2129953_36	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-2129953_36	Structural annotation	PF11114	NA	NA
UHGV-2129953_37	PHROG	phrog_3266	tail completion	connector
UHGV-2129953_37	eggNOG-mapper	476272.RUMHYD_01781	NA	NA
UHGV-2129953_37	Structural annotation	PF12691	NA	NA
UHGV-2129953_38	PHROG	phrog_3099	NA	unknown function
UHGV-2129953_38	eggNOG-mapper	693746.OBV_18150	NA	NA
UHGV-2129953_38	Structural annotation	PF10772, TIGR02126, COG3499	NA	NA
UHGV-2129953_39	PHROG	phrog_11299	NA	unknown function
UHGV-2129953_39	eggNOG-mapper	1449050.JNLE01000003_gene3883	NA	NA
UHGV-2129953_39	Structural annotation	PF10666	NA	NA
UHGV-2129953_40	PHROG	phrog_706	NA	unknown function
UHGV-2129953_40	UniRef90	UniRef90_UPI00164D7633	Gp15 family bacteriophage protein	NA
UHGV-2129953_40	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-2129953_40	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-2129953_40	Structural annotation	PF06854	NA	NA
UHGV-2129953_41	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-2129953_41	UniRef90	UniRef90_A0A810PX76	Phage tail tape measure protein	NA
UHGV-2129953_41	eggNOG-mapper	1449050.JNLE01000003_gene3881	domain protein	NA
UHGV-2129953_41	COG	COG1511	NA	NA
UHGV-2129953_42	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-2129953_43	PHROG	phrog_6616	tail protein	tail
UHGV-2129953_43	Structural annotation	PF13550, PF09931, NF033848, COG3500	NA	NA
UHGV-2129953_44	Structural annotation	PF20622, NF032891	NA	NA
UHGV-2129953_45	eggNOG-mapper	411471.SUBVAR_06929	ATPase involved in DNA repair	NA
UHGV-2129953_45	COG	COG0419	DNA repair exonuclease SbcCD ATPase subunit	NA
UHGV-2129953_46	KOfam	K20846	cgkA; kappa-carrageenase [EC:3.2.1.83]	NA
UHGV-2129953_46	PHROG	phrog_215	structural protein with Ig domain	head and packaging
UHGV-2129953_46	eggNOG-mapper	203275.BFO_0575	Bacterial group 2 Ig-like protein	NA
UHGV-2129953_46	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-2129953_46	COG	COG5492	NA	NA
UHGV-2129953_46	Structural annotation	PF02368, PF09423, MF_00575, NF003743, NF005261, COG5492	NA	NA
UHGV-2129953_47	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2129953_47	PHROG	phrog_9611	endolysin	lysis
UHGV-2129953_47	UniRef90	UniRef90_A0A3D1VCL7	N-acetylmuramoyl-L-alanine amidase domain-containing protein (Fragment)	NA
UHGV-2129953_47	eggNOG-mapper	97138.C820_00738	Ami_2	NA
UHGV-2129953_47	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-2129953_47	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-2129953_47	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-2129953_48	PHROG	phrog_199	holin	lysis
UHGV-2129953_48	UniRef90	UniRef90_A0A3D1VF24	Holin	NA
UHGV-2129953_48	eggNOG-mapper	742738.HMPREF9460_01388	Bacteriophage holin family	NA
UHGV-2129953_48	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-2129953_48	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-2129953_48	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-2129953_48	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA