UHGV-2130570

Genome information

vOTU vOTU-042034

Genome length 25,566 bps

CDS count 36

Completeness 62.79% (medium-quality)

geNomad score 0.9610

Prediction confidence Confident

Genome information
Genome ID	UHGV-2130570
vOTU ID	vOTU-042034
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029698\|Ga0245184_100847\|provirus_12365_37930
BioSample	SAMEA3449236
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	62.79% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9610
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.14
Jumbo phage	No

Genome content
Genome length	25,566 bps
GC content	38.68%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	36
CDS density	91.48%
Average CDS length	651.08 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2130570_1	KOfam	K14059	int; integrase	NA
UHGV-2130570_1	PHROG	phrog_1	integrase	integration and excision
UHGV-2130570_1	UniRef90	UniRef90_UPI00085CBEF7	tyrosine-type recombinase/integrase	NA
UHGV-2130570_1	eggNOG-mapper	1280689.AUJC01000011_gene1488	Phage integrase family	NA
UHGV-2130570_1	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-2130570_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2130570_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2130570_1	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-2130570_2	PHROG	phrog_1847	NA	unknown function
UHGV-2130570_2	UniRef90	UniRef90_A0A1C6CPF8	F0F1 ATP synthase subunit B	NA
UHGV-2130570_2	eggNOG-mapper	445974.CLORAM_02968	T5orf172	NA
UHGV-2130570_2	Pfam	PF13250	NA	DUF4041
UHGV-2130570_2	Pfam	PF13455	Meiotically up-regulated gene 113	MUG113
UHGV-2130570_2	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-2130570_2	Structural annotation	PF19962	NA	NA
UHGV-2130570_3	PHROG	phrog_2468	head morphogenesis	head and packaging
UHGV-2130570_3	UniRef90	UniRef90_A0A1C6EEG3	Phage Mu protein F like protein	NA
UHGV-2130570_3	eggNOG-mapper	397291.C804_05818	cell adhesion	NA
UHGV-2130570_3	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-2130570_3	COG	COG2369	NA	NA
UHGV-2130570_4	PHROG	phrog_12	portal protein	head and packaging
UHGV-2130570_4	UniRef90	UniRef90_A0A1C6EE87	Phage portal protein, PBSX family	NA
UHGV-2130570_4	eggNOG-mapper	411459.RUMOBE_01050	Bacteriophage capsid portal protein	NA
UHGV-2130570_4	NCBIFam	TIGR01540.1	phage portal protein	NA
UHGV-2130570_4	COG	COG5518	Phage capsid portal protein XkdE	NA
UHGV-2130570_4	Structural annotation	PF04860, MF_04120, TIGR01540, COG5518	NA	NA
UHGV-2130570_5	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2130570_5	PHROG	phrog_5902	NA	unknown function
UHGV-2130570_5	UniRef90	UniRef90_A0A4R4CXQ5	Terminase B	NA
UHGV-2130570_5	eggNOG-mapper	397291.C804_05816	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD	NA
UHGV-2130570_5	COG	COG0507	ATPase/5'-3' helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-2130570_5	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG4373	NA	NA
UHGV-2130570_6	PHROG	phrog_2412	NA	unknown function
UHGV-2130570_6	UniRef90	UniRef90_R5AAQ5	NA	NA
UHGV-2130570_6	eggNOG-mapper	1232449.BAHV02000018_gene1532	NA	NA
UHGV-2130570_6	Pfam	PF10685	Stress-induced bacterial acidophilic repeat motif	KGG
UHGV-2130570_7	AcrCatalog	cluster_138565	NA	NA
UHGV-2130570_7	Structural annotation	PF15968	NA	NA
UHGV-2130570_8	Pfam	PF20505	NA	DUF6731
UHGV-2130570_8	Structural annotation	PF20505	NA	NA
UHGV-2130570_9	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2130570_9	eggNOG-mapper	1232443.BAIA02000106_gene3115	NA	NA
UHGV-2130570_9	Structural annotation	PF04545, TIGR02984	NA	NA
UHGV-2130570_12	PHROG	phrog_8684	NA	unknown function
UHGV-2130570_12	UniRef90	UniRef90_A0A374HKH4	YopX domain-containing protein	NA
UHGV-2130570_12	eggNOG-mapper	1234679.BN424_2637	YopX protein	NA
UHGV-2130570_12	Pfam	PF09643	YopX protein	YopX
UHGV-2130570_14	Structural annotation	PF15591, MF_00667, NF000331	NA	NA
UHGV-2130570_15	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-2130570_15	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2130570_15	UniRef90	UniRef90_UPI000F52952D	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-2130570_15	eggNOG-mapper	411462.DORLON_00806	Endodeoxyribonuclease RusA	NA
UHGV-2130570_15	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-2130570_15	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-2130570_15	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-2130570_16	KOfam	K07505	repA; regulatory protein RepA	NA
UHGV-2130570_16	PHROG	phrog_2597	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-2130570_16	UniRef90	UniRef90_A0A1C6E992	Regulatory protein repA	NA
UHGV-2130570_16	eggNOG-mapper	394503.Ccel_3304	Primase C terminal 2 (PriCT-2)	NA
UHGV-2130570_16	Pfam	PF08707	Primase C terminal 2 (PriCT-2)	PriCT_2
UHGV-2130570_16	Pfam	PF13481	AAA domain	AAA_25
UHGV-2130570_16	COG	COG3598	RecA-family ATPase	NA
UHGV-2130570_16	Structural annotation	PF13481, PF16793, PF08220, MF_00350, MF_00700, NF006606, NF001641, COG3598, COG3285	NA	NA
UHGV-2130570_17	KOfam	K17677	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	NA
UHGV-2130570_17	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2130570_17	UniRef90	UniRef90_A0A1C6E943	Type-1 restriction enzyme R protein	NA
UHGV-2130570_17	eggNOG-mapper	1235798.C817_03499	helicase superfamily c-terminal domain	NA
UHGV-2130570_17	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-2130570_17	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-2130570_17	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-2130570_17	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-2130570_17	Structural annotation	PF04851, PF16203, MF_01489, NF008521, COG1061	NA	NA
UHGV-2130570_18	PHROG	phrog_2698	NA	unknown function
UHGV-2130570_18	UniRef90	UniRef90_UPI001D0882DA	NA	NA
UHGV-2130570_18	eggNOG-mapper	742723.HMPREF9477_00927	NA	NA
UHGV-2130570_18	Structural annotation	PF05037	NA	NA
UHGV-2130570_19	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2130570_19	UniRef90	UniRef90_UPI000F52E538	ATP-binding protein	NA
UHGV-2130570_19	eggNOG-mapper	1235792.C808_05390	AAA domain	NA
UHGV-2130570_19	Pfam	PF13479	AAA domain	AAA_24
UHGV-2130570_19	Structural annotation	PF13479, MF_00268, TIGR01618, COG0468	NA	NA
UHGV-2130570_20	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-2130570_20	PHROG	phrog_1499	NA	unknown function
UHGV-2130570_20	UniRef90	UniRef90_A0A1C6E8X2	Chromosome segregation protein	NA
UHGV-2130570_20	eggNOG-mapper	1262914.BN533_01950	AAA domain	NA
UHGV-2130570_20	Pfam	PF13476	AAA domain	AAA_23
UHGV-2130570_20	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-2130570_20	Structural annotation	PF11398, MF_00365, TIGR00634, COG0497	NA	NA
UHGV-2130570_22	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-2130570_22	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-2130570_22	UniRef90	UniRef90_A0A373SW63	PAPS_reduct domain-containing protein	NA
UHGV-2130570_22	eggNOG-mapper	1235800.C819_02256	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-2130570_22	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-2130570_23	eggNOG-mapper	1235800.C819_02256	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-2130570_23	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-2130570_25	eggNOG-mapper	1460635.JCM19038_3443	NA	NA
UHGV-2130570_26	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-2130570_26	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-2130570_26	UniRef90	UniRef90_A0A7X8K9J4	Phage antirepressor Ant	NA
UHGV-2130570_26	eggNOG-mapper	1230342.CTM_16892	Phage antirepressor protein	NA
UHGV-2130570_26	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-2130570_26	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-2130570_26	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-2130570_26	Structural annotation	PF03374, PF08346, TIGR02681, COG3561, COG3645	NA	NA
UHGV-2130570_29	UniRef90	UniRef90_N1ZKM3	HTH cro/C1-type domain-containing protein	NA
UHGV-2130570_29	eggNOG-mapper	97138.C820_00784	sequence-specific DNA binding	NA
UHGV-2130570_29	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2130570_31	PHROG	phrog_27728	NA	unknown function
UHGV-2130570_31	UniRef90	UniRef90_A0A844LSY0	FlgT_C domain-containing protein	NA
UHGV-2130570_31	eggNOG-mapper	1071400.LBUCD034_0910	NA	NA
UHGV-2130570_31	Structural annotation	PF16538	NA	NA
UHGV-2130570_34	UniRef90	UniRef90_A0A373V5W6	XRE family transcriptional regulator	NA
UHGV-2130570_34	eggNOG-mapper	887929.HMP0721_1290	Helix-turn-helix domain of resolvase	NA
UHGV-2130570_34	Pfam	PF02954	Bacterial regulatory protein, Fis family	HTH_8
UHGV-2130570_34	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-2130570_35	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-2130570_35	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-2130570_35	UniRef90	UniRef90_D4LDS3	SOS-response transcriptional repressors (RecA-mediated autopeptidases)	NA
UHGV-2130570_35	eggNOG-mapper	411473.RUMCAL_03095	NA	NA
UHGV-2130570_35	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-2130570_35	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2130570_35	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-2130570_35	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-2130570_35	Structural annotation	PF00717, PF12844, MF_00015, TIGR00498, TIGR03070, COG1974	NA	NA