UHGV-2130762

Genome information

Genome length 37,282 bps

CDS count 51

Completeness 82.48% (medium-quality)

geNomad score 0.9783

Prediction confidence Confident

Genome information
Genome ID	UHGV-2130762
vOTU ID	vOTU-017320
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029702\|Ga0245265_100013\|provirus_34366_71647
BioSample	SAMEA3449316
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	82.48% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9783
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	53.65
Jumbo phage	No

Genome content
Genome length	37,282 bps
GC content	50.24%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	51
CDS density	93.47%
Average CDS length	688.65 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2130762_1	PHROG	phrog_15956	tail assembly protein	tail
UHGV-2130762_1	UniRef90	UniRef90_A0A644YJG6	NlpC/P60 domain-containing protein	NA
UHGV-2130762_1	eggNOG-mapper	742740.HMPREF9474_01683	Glycosyl hydrolases family 25	NA
UHGV-2130762_1	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-2130762_1	Structural annotation	PF11910, MF_01354, NF033742	NA	NA
UHGV-2130762_2	PHROG	phrog_608	holin	lysis
UHGV-2130762_2	UniRef90	UniRef90_R6I9L8	Putative phage holin	NA
UHGV-2130762_2	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-2130762_2	NCBIFam	TIGR01673.1	phage holin	NA
UHGV-2130762_2	Structural annotation	PF09682, TIGR01673	NA	NA
UHGV-2130762_3	PHROG	phrog_1863	NA	unknown function
UHGV-2130762_3	eggNOG-mapper	1291050.JAGE01000001_gene2942	NA	NA
UHGV-2130762_4	PHROG	phrog_27545	NA	unknown function
UHGV-2130762_4	UniRef90	UniRef90_A0A2V2GQB6	Chitin-binding type-3 domain-containing protein	NA
UHGV-2130762_4	eggNOG-mapper	411471.SUBVAR_06976	NA	NA
UHGV-2130762_4	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-2130762_6	Structural annotation	PF02973	NA	NA
UHGV-2130762_7	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-2130762_7	Structural annotation	PF10651, NF009453	NA	NA
UHGV-2130762_9	PHROG	phrog_6616	tail protein	tail
UHGV-2130762_9	eggNOG-mapper	1262449.CP6013_3213	Phage minor structural protein	NA
UHGV-2130762_9	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-2130762_9	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-2130762_10	PHROG	phrog_1194	NA	unknown function
UHGV-2130762_10	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-2130762_11	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-2130762_11	UniRef90	UniRef90_R6DYC9	Phage-related protein-like protein	NA
UHGV-2130762_11	eggNOG-mapper	645991.Sgly_0352	SLT domain	NA
UHGV-2130762_11	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-2130762_12	PHROG	phrog_8355	NA	unknown function
UHGV-2130762_12	UniRef90	UniRef90_A0A1H3Y2Z5	Bacteriophage Gp15 protein	NA
UHGV-2130762_12	eggNOG-mapper	717606.PaecuDRAFT_3131	Bacteriophage Gp15 protein	NA
UHGV-2130762_13	PHROG	phrog_8300	NA	unknown function
UHGV-2130762_13	eggNOG-mapper	1507.HMPREF0262_01185	NA	NA
UHGV-2130762_13	Structural annotation	PF06854	NA	NA
UHGV-2130762_14	PHROG	phrog_820	major tail protein	tail
UHGV-2130762_14	UniRef90	UniRef90_R6DLA9	Conserved domain protein	NA
UHGV-2130762_14	eggNOG-mapper	1415775.U729_2611	NA	NA
UHGV-2130762_14	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-2130762_14	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-2130762_15	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-2130762_15	UniRef90	UniRef90_UPI000839A9D2	minor capsid protein	NA
UHGV-2130762_15	eggNOG-mapper	1151292.QEW_2427	NA	NA
UHGV-2130762_15	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-2130762_15	Structural annotation	PF12691, COG5003	NA	NA
UHGV-2130762_16	PHROG	phrog_556	minor head protein	head and packaging
UHGV-2130762_16	eggNOG-mapper	483218.BACPEC_01151	NA	NA
UHGV-2130762_17	PHROG	phrog_8710	NA	unknown function
UHGV-2130762_17	eggNOG-mapper	585501.HMPREF6123_0832	NA	NA
UHGV-2130762_17	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-2130762_18	PHROG	phrog_541	head-tail adaptor	connector
UHGV-2130762_18	eggNOG-mapper	742740.HMPREF9474_03507	NA	NA
UHGV-2130762_19	PHROG	phrog_422	major head protein	head and packaging
UHGV-2130762_19	UniRef90	UniRef90_R6DLA5	Phage major capsid protein	NA
UHGV-2130762_19	eggNOG-mapper	445972.ANACOL_01845	NA	NA
UHGV-2130762_19	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-2130762_20	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-2130762_20	Structural annotation	MF_02110	NA	NA
UHGV-2130762_22	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2130762_22	UniRef90	UniRef90_R5A5Z0	Putative phage minor capsid protein	NA
UHGV-2130762_22	eggNOG-mapper	1151292.QEW_4396	COG3209 Rhs family protein	NA
UHGV-2130762_22	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2130762_22	COG	COG2369	NA	NA
UHGV-2130762_22	Structural annotation	PF06152, PF03496, NF041404	NA	NA
UHGV-2130762_23	PHROG	phrog_533	portal protein	head and packaging
UHGV-2130762_23	UniRef90	UniRef90_R6E386	Phage minor capsid protein	NA
UHGV-2130762_23	eggNOG-mapper	33035.JPJF01000093_gene2257	NA	NA
UHGV-2130762_23	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2130762_23	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-2130762_24	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2130762_24	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-2130762_24	UniRef90	UniRef90_A0A1M4ZB17	Phage terminase, large subunit, PBSX family	NA
UHGV-2130762_24	eggNOG-mapper	742740.HMPREF9474_03500	Phage terminase, large subunit, PBSX family	NA
UHGV-2130762_24	COG	COG1783	Phage terminase large subunit	NA
UHGV-2130762_24	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-2130762_25	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-2130762_25	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-2130762_25	UniRef90	UniRef90_UPI000E4E3378	terminase small subunit	NA
UHGV-2130762_25	eggNOG-mapper	608534.GCWU000341_02298	Terminase small subunit	NA
UHGV-2130762_25	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-2130762_25	COG	COG3728	Phage terminase, small subunit	NA
UHGV-2130762_25	Structural annotation	PF03592, COG3728	NA	NA
UHGV-2130762_26	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2130762_26	UniRef90	UniRef90_UPI001D05F87A	RNA polymerase subunit sigma-24	NA
UHGV-2130762_26	eggNOG-mapper	1235835.C814_01174	NA	NA
UHGV-2130762_26	Structural annotation	PF04545	NA	NA
UHGV-2130762_27	PHROG	phrog_3777	NA	unknown function
UHGV-2130762_27	UniRef90	UniRef90_A0A417F5N7	NA	NA
UHGV-2130762_27	eggNOG-mapper	469596.HMPREF9488_02298	NA	NA
UHGV-2130762_27	Pfam	PF12957	NA	DUF3846
UHGV-2130762_27	COG	COG2105	Predicted gamma-glutamylamine cyclotransferase YtfP, GGCT/AIG2-like family	NA
UHGV-2130762_27	Structural annotation	PF12957	NA	NA
UHGV-2130762_28	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-2130762_28	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2130762_28	UniRef90	UniRef90_A0A2V2FWS9	DEAD/DEAH box helicase	NA
UHGV-2130762_28	eggNOG-mapper	1120971.AUCA01000043_gene1170	SNF2 family N-terminal domain	NA
UHGV-2130762_28	PADLOC	DpdE_00010	DpdE	DPD
UHGV-2130762_28	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-2130762_28	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-2130762_28	Structural annotation	PF13872, PF16203, MF_01821, NF041790, COG0553	NA	NA
UHGV-2130762_29	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2130762_29	UniRef90	UniRef90_A0A2V2FU35	VRR-NUC domain-containing protein	NA
UHGV-2130762_29	eggNOG-mapper	445335.CBN_2999	VRR-NUC domain-containing protein	NA
UHGV-2130762_29	Structural annotation	PF01870, MF_00130, NF002584, COG1591	NA	NA
UHGV-2130762_30	PHROG	phrog_256	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2130762_30	UniRef90	UniRef90_A0A2V2FYQ5	Virulence-associated protein E	NA
UHGV-2130762_30	eggNOG-mapper	1203606.HMPREF1526_00242	virulence-associated E family protein	NA
UHGV-2130762_30	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-2130762_30	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-2130762_30	Structural annotation	PF05272, MF_04000, NF005477, NF040562, COG5545	NA	NA
UHGV-2130762_31	KOfam	K02334	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	NA
UHGV-2130762_31	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-2130762_31	UniRef90	UniRef90_A0A7X5INW3	POLAc domain-containing protein	NA
UHGV-2130762_31	eggNOG-mapper	1203606.HMPREF1526_00239	DNA polymerase	NA
UHGV-2130762_31	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-2130762_31	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-2130762_31	Structural annotation	PF00476, MF_04101, NF011540, COG0749	NA	NA
UHGV-2130762_32	PHROG	phrog_112	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2130762_32	UniRef90	UniRef90_A0A2V2FV77	NA	NA
UHGV-2130762_32	eggNOG-mapper	1203606.HMPREF1526_00235	NA	NA
UHGV-2130762_32	Pfam	PF10991	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
UHGV-2130762_32	Structural annotation	PF10991, MF_04153, NF005241	NA	NA
UHGV-2130762_34	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-2130762_34	UniRef90	UniRef90_A0A2V2FS99	NA	NA
UHGV-2130762_34	eggNOG-mapper	1203606.HMPREF1526_00234	NA	NA
UHGV-2130762_34	Pfam	PF10926	NA	DUF2800
UHGV-2130762_34	COG	COG2887	RecB family exonuclease	NA
UHGV-2130762_34	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-2130762_35	PHROG	phrog_22695	NA	unknown function
UHGV-2130762_35	eggNOG-mapper	1120971.AUCA01000043_gene1180	NA	NA
UHGV-2130762_37	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2130762_37	UniRef90	UniRef90_R6HY73	HTH cro/C1-type domain-containing protein	NA
UHGV-2130762_37	eggNOG-mapper	457412.RSAG_04663	sequence-specific DNA binding	NA
UHGV-2130762_37	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2130762_37	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2130762_37	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-2130762_40	KOfam	K01449	cwlJ, sleB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2130762_40	PHROG	phrog_18750	NA	unknown function
UHGV-2130762_40	UniRef90	UniRef90_A0A3D5TM41	Hydrolase_2 domain-containing protein	NA
UHGV-2130762_40	eggNOG-mapper	445972.ANACOL_03333	Cell wall hydrolase	NA
UHGV-2130762_40	Pfam	PF07486	Cell Wall Hydrolase	Hydrolase_2
UHGV-2130762_40	COG	COG3773	Cell wall hydrolase CwlJ, involved in spore germination	NA
UHGV-2130762_40	Structural annotation	PF07486, TIGR02869, COG3773	NA	NA
UHGV-2130762_42	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-2130762_42	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-2130762_42	UniRef90	UniRef90_UPI001C122BB1	antA/AntB antirepressor family protein	NA
UHGV-2130762_42	eggNOG-mapper	1414720.CBYM010000005_gene1349	Phage antirepressor protein KilAC domain	NA
UHGV-2130762_42	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-2130762_42	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-2130762_42	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-2130762_42	Structural annotation	PF03374, PF08346, TIGR02681, COG3645, COG3561	NA	NA
UHGV-2130762_46	UniRef90	UniRef90_A0A1C5ZMM8	HTH_8 domain-containing protein	NA
UHGV-2130762_46	eggNOG-mapper	1121335.Clst_0370	NA	NA
UHGV-2130762_46	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-2130762_46	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-2130762_47	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-2130762_47	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-2130762_47	UniRef90	UniRef90_R5L1M5	DNA-binding helix-turn-helix / peptidase S24-like multi-domain protein	NA
UHGV-2130762_47	eggNOG-mapper	796940.HMPREF9628_00178	Peptidase S24-like	NA
UHGV-2130762_47	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2130762_47	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-2130762_47	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-2130762_47	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-2130762_48	PHROG	phrog_9151	HicB-like antitoxin	moron, auxiliary metabolic gene and host takeover
UHGV-2130762_48	UniRef90	UniRef90_A0A7C6HED8	Type II toxin-antitoxin system HicB family antitoxin	NA
UHGV-2130762_48	eggNOG-mapper	1392502.JNIO01000008_gene1606	protein encoded in hypervariable junctions of pilus gene clusters	NA
UHGV-2130762_48	Pfam	PF05534	HicB family	HicB
UHGV-2130762_48	COG	COG4226	Predicted nuclease of the RNAse H fold, HicB family	NA
UHGV-2130762_48	Structural annotation	PF21748, PF07878, NF041264, COG4226	NA	NA
UHGV-2130762_50	KOfam	K14059	int; integrase	NA
UHGV-2130762_50	PHROG	phrog_1	integrase	integration and excision
UHGV-2130762_50	UniRef90	UniRef90_UPI0005AA7FA8	site-specific integrase	NA
UHGV-2130762_50	eggNOG-mapper	1216362.B437_07177	Belongs to the 'phage' integrase family	NA
UHGV-2130762_50	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2130762_50	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2130762_50	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-2130762_51	KOfam	K14058	ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA	NA
UHGV-2130762_51	PHROG	phrog_27769	NA	unknown function
UHGV-2130762_51	UniRef90	UniRef90_R6I848	PP-loop family protein	NA
UHGV-2130762_51	eggNOG-mapper	411463.EUBVEN_00849	Belongs to the TtcA family	NA
UHGV-2130762_51	Pfam	PF00581	Rhodanese-like domain	Rhodanese
UHGV-2130762_51	Pfam	PF01171	PP-loop family	ATP_bind_3
UHGV-2130762_51	COG	COG0037	tRNA(Ile)-lysidine synthase TilS/MesJ	NA