UHGV-2131244

Genome information

Genome length 34,943 bps

CDS count 50

Completeness 71.87% (medium-quality)

geNomad score 0.9448

Prediction confidence Confident

Genome information
Genome ID	UHGV-2131244
vOTU ID	vOTU-018568
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029615\|Ga0245146_100048\|provirus_3_34945
BioSample	NA
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	71.87% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	26
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9448
Virus hallmark genes (geNomad)	17
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	86.32
Jumbo phage	No

Genome content
Genome length	34,943 bps
GC content	53.08%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	92.51%
Average CDS length	651.12 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2131244_4	KOfam	K01185	E3.2.1.17; lysozyme [EC:3.2.1.17]	NA
UHGV-2131244_4	PHROG	phrog_7	endolysin	lysis
UHGV-2131244_4	UniRef90	UniRef90_R7I6I8	Lysozyme	NA
UHGV-2131244_4	eggNOG-mapper	406817.XNC1_2340	lysozyme	NA
UHGV-2131244_4	Pfam	PF00959	Phage lysozyme	Phage_lysozyme
UHGV-2131244_4	COG	COG3772	Phage-related lysozyme (muramidase), GH24 family	NA
UHGV-2131244_4	HAMAP	MF_04110	Endolysin	NA
UHGV-2131244_4	Structural annotation	PF00959, MF_04110, COG3772	NA	NA
UHGV-2131244_6	PHROG	phrog_199	holin	lysis
UHGV-2131244_6	UniRef90	UniRef90_R7I745	Toxin secretion/phage lysis holin	NA
UHGV-2131244_6	eggNOG-mapper	742823.HMPREF9465_00190	Bacteriophage holin family	NA
UHGV-2131244_6	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-2131244_6	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-2131244_6	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-2131244_8	Structural annotation	PF18998	NA	NA
UHGV-2131244_9	UniRef90	UniRef90_R7I740	GK12566 gene product from transcript GK12566-RA	NA
UHGV-2131244_10	PHROG	phrog_2712	tail fiber protein	tail
UHGV-2131244_10	UniRef90	UniRef90_A0A4Q6GJQ4	Tail fiber domain-containing protein (Fragment)	NA
UHGV-2131244_10	eggNOG-mapper	69328.PVLB_09660	NA	NA
UHGV-2131244_11	PHROG	phrog_2618	NA	unknown function
UHGV-2131244_11	UniRef90	UniRef90_UPI001CD500C8	GA module-containing protein	NA
UHGV-2131244_12	PHROG	phrog_31	baseplate hub protein Tal	tail
UHGV-2131244_12	UniRef90	UniRef90_UPI0009E2902D	phage tail protein	NA
UHGV-2131244_12	eggNOG-mapper	267608.RSc1698	Putative phage tail protein	NA
UHGV-2131244_12	Pfam	PF13550	Putative phage tail protein	Phage-tail_3
UHGV-2131244_12	Pfam	PF00041	Fibronectin type III domain	fn3
UHGV-2131244_12	Pfam	PF09327	NA	DUF1983
UHGV-2131244_12	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-2131244_12	Structural annotation	PF09327, PF13550, PF16323, PF16383, PF14879, PF05744, NF040662, NF038116, COG4733	NA	NA
UHGV-2131244_13	PHROG	phrog_4946	tail protein	tail
UHGV-2131244_13	UniRef90	UniRef90_UPI0006715E86	tail assembly protein	NA
UHGV-2131244_13	eggNOG-mapper	556268.OFAG_00867	Bacteriophage lambda tail assembly protein I	NA
UHGV-2131244_13	Pfam	PF06805	Bacteriophage lambda tail assembly protein I	Lambda_tail_I
UHGV-2131244_13	COG	COG4723	Phage-related protein, tail assembly protein I	NA
UHGV-2131244_13	Structural annotation	PF06805, NF008347, COG4723	NA	NA
UHGV-2131244_14	KOfam	K21140	mec; [CysO sulfur-carrier protein]-S-L-cysteine hydrolase [EC:3.13.1.6]	NA
UHGV-2131244_14	PHROG	phrog_30	minor tail protein	tail
UHGV-2131244_14	UniRef90	UniRef90_UPI0006707C66	C40 family peptidase	NA
UHGV-2131244_14	eggNOG-mapper	1216976.AX27061_3787	JAB/MPN domain	NA
UHGV-2131244_14	Pfam	PF14464	Prokaryotic homologs of the JAB domain	Prok-JAB
UHGV-2131244_14	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-2131244_14	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-2131244_14	Structural annotation	PF14464, PF00877, NF041370, TIGR02219, COG1310, COG0791	NA	NA
UHGV-2131244_15	PHROG	phrog_18	minor tail protein	tail
UHGV-2131244_15	UniRef90	UniRef90_UPI000671688A	phage minor tail protein L	NA
UHGV-2131244_15	eggNOG-mapper	1216976.AX27061_5548	Phage minor tail protein L	NA
UHGV-2131244_15	Pfam	PF05100	Phage minor tail protein L	Phage_tail_L
UHGV-2131244_15	NCBIFam	TIGR01600.1	phage minor tail protein L	NA
UHGV-2131244_15	COG	COG4672	Phage tail protein	NA
UHGV-2131244_15	Structural annotation	PF05100, TIGR01600, COG4672	NA	NA
UHGV-2131244_16	PHROG	phrog_14	minor tail protein	tail
UHGV-2131244_16	UniRef90	UniRef90_UPI0006708D18	phage tail protein	NA
UHGV-2131244_16	eggNOG-mapper	556268.OFAG_00871	Phage minor tail protein	NA
UHGV-2131244_16	Pfam	PF05939	Phage minor tail protein	Phage_min_tail
UHGV-2131244_16	COG	COG4718	Phage tail protein	NA
UHGV-2131244_16	Structural annotation	PF05939, TIGR02217, COG4718	NA	NA
UHGV-2131244_17	PHROG	phrog_24	tail length tape measure protein	tail
UHGV-2131244_17	UniRef90	UniRef90_UPI000670E065	phage tail tape measure protein	NA
UHGV-2131244_17	eggNOG-mapper	688245.CtCNB1_3560	COG5281, Phage-related minor tail protein	NA
UHGV-2131244_17	Pfam	PF06791	Prophage tail length tape measure protein	TMP_2
UHGV-2131244_17	Pfam	PF09718	Lambda phage tail tape-measure protein (Tape_meas_lam_C)	Tape_meas_lam_C
UHGV-2131244_17	NCBIFam	TIGR01541.1	phage tail tape measure protein	NA
UHGV-2131244_17	COG	COG5185	Chromosome segregation protein NDC80, interacts with SMC proteins	NA
UHGV-2131244_17	Structural annotation	PF06791, MF_04138, COG5281	NA	NA
UHGV-2131244_18	PHROG	phrog_680	tail length tape measure protein	tail
UHGV-2131244_18	UniRef90	UniRef90_UPI00069EA363	NA	NA
UHGV-2131244_18	eggNOG-mapper	477184.KYC_18235	NA	NA
UHGV-2131244_18	Pfam	PF08809	NA	DUF1799
UHGV-2131244_19	PHROG	phrog_569	tail length tape measure protein	tail
UHGV-2131244_19	UniRef90	UniRef90_UPI0006712093	phage tail assembly chaperone	NA
UHGV-2131244_19	eggNOG-mapper	762376.AXYL_04018	Phage tail assembly chaperone	NA
UHGV-2131244_19	Pfam	PF08748	Phage tail assembly chaperone	Phage_TAC_4
UHGV-2131244_20	PHROG	phrog_584	major tail protein	tail
UHGV-2131244_20	UniRef90	UniRef90_UPI000670CCCB	phage tail protein	NA
UHGV-2131244_20	eggNOG-mapper	1000565.METUNv1_01682	Phage tail tube protein, TTP	NA
UHGV-2131244_20	Pfam	PF08813	Phage tail tube protein, TTP	Phage_tail_3
UHGV-2131244_20	COG	COG5492	NA	NA
UHGV-2131244_20	Structural annotation	PF08813, TIGR02126, COG5437	NA	NA
UHGV-2131244_21	PHROG	phrog_347	tail terminator	connector
UHGV-2131244_21	UniRef90	UniRef90_UPI000670F49E	NA	NA
UHGV-2131244_21	eggNOG-mapper	1429851.X548_20320	NA	NA
UHGV-2131244_21	Pfam	PF11367	NA	DUF3168
UHGV-2131244_22	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2131244_22	UniRef90	UniRef90_UPI0009E568BF	HK97 gp10 family phage protein	NA
UHGV-2131244_22	eggNOG-mapper	762376.AXYL_04021	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-2131244_22	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-2131244_23	PHROG	phrog_25	head closure Hc1	connector
UHGV-2131244_23	UniRef90	UniRef90_UPI0006708380	phage head closure protein	NA
UHGV-2131244_23	eggNOG-mapper	1007105.PT7_P053	Phage head-tail joining protein	NA
UHGV-2131244_23	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-2131244_23	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-2131244_23	COG	COG5614	Phage head-tail adaptor	NA
UHGV-2131244_23	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-2131244_24	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-2131244_24	UniRef90	UniRef90_UPI0006713445	head-tail connector protein	NA
UHGV-2131244_24	eggNOG-mapper	1121871.AUAT01000022_gene1852	Phage gp6-like head-tail connector protein	NA
UHGV-2131244_24	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-2131244_24	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-2131244_24	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-2131244_25	PHROG	phrog_10	major head protein	head and packaging
UHGV-2131244_25	UniRef90	UniRef90_UPI000671041A	phage major capsid protein	NA
UHGV-2131244_25	eggNOG-mapper	1005048.CFU_3365	Phage capsid family	NA
UHGV-2131244_25	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2131244_25	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2131244_25	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2131244_25	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2131244_26	KOfam	K06904	NA	NA
UHGV-2131244_26	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-2131244_26	UniRef90	UniRef90_UPI000671688B	HK97 family phage prohead protease	NA
UHGV-2131244_26	eggNOG-mapper	157783.LK03_13365	Prohead protease	NA
UHGV-2131244_26	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-2131244_26	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-2131244_26	COG	COG3740	Phage head maturation protease	NA
UHGV-2131244_26	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-2131244_27	PHROG	phrog_12	portal protein	head and packaging
UHGV-2131244_27	UniRef90	UniRef90_UPI000670884E	phage portal protein	NA
UHGV-2131244_27	eggNOG-mapper	1005048.CFU_3367	Phage portal protein	NA
UHGV-2131244_27	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2131244_27	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-2131244_27	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2131244_27	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-2131244_28	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2131244_28	UniRef90	UniRef90_UPI0006710F9A	terminase large subunit	NA
UHGV-2131244_28	eggNOG-mapper	742821.HMPREF9464_01834	Terminase	NA
UHGV-2131244_28	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-2131244_28	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2131244_28	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2131244_28	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-2131244_29	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-2131244_29	UniRef90	UniRef90_UPI0006712FF9	P27 family phage terminase small subunit	NA
UHGV-2131244_29	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-2131244_29	COG	COG3747	Phage terminase, small subunit	NA
UHGV-2131244_31	Structural annotation	PF06530, NF006930, COG1595	NA	NA
UHGV-2131244_32	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-2131244_32	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2131244_32	UniRef90	UniRef90_R7IL81	Crossover junction endodeoxyribonuclease RusA	NA
UHGV-2131244_32	eggNOG-mapper	411470.RUMGNA_02196	COG COG4570 Holliday junction resolvase	NA
UHGV-2131244_32	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-2131244_32	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-2131244_32	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-2131244_34	KOfam	K17680	PEO1; twinkle protein [EC:5.6.2.3]	NA
UHGV-2131244_34	PHROG	phrog_5482	NA	unknown function
UHGV-2131244_34	UniRef90	UniRef90_R7IKC5	SF4 helicase domain-containing protein	NA
UHGV-2131244_34	eggNOG-mapper	398578.Daci_1933	DnaB-like helicase C terminal domain	NA
UHGV-2131244_34	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-2131244_34	COG	COG0305	Replicative DNA helicase	NA
UHGV-2131244_34	Structural annotation	PF03796, MF_04154, NF004109, COG0305	NA	NA
UHGV-2131244_36	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-2131244_36	COG	COG0640	DNA-binding transcriptional regulator, ArsR family	NA
UHGV-2131244_37	UniRef90	UniRef90_UPI0006717567	helix-turn-helix domain-containing protein	NA
UHGV-2131244_37	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2131244_38	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2131244_38	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-2131244_38	UniRef90	UniRef90_UPI00067109C6	helix-turn-helix transcriptional regulator	NA
UHGV-2131244_38	eggNOG-mapper	1203554.HMPREF1476_00235	Peptidase S24-like	NA
UHGV-2131244_38	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2131244_38	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-2131244_38	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-2131244_38	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-2131244_42	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2131244_42	UniRef90	UniRef90_R7IN71	NA	NA
UHGV-2131244_42	eggNOG-mapper	669262.COK_1592	NA	NA
UHGV-2131244_42	Pfam	PF13479	AAA domain	AAA_24
UHGV-2131244_42	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-2131244_43	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-2131244_43	UniRef90	UniRef90_UPI001F14158A	siphovirus Gp157 family protein	NA
UHGV-2131244_43	eggNOG-mapper	411470.RUMGNA_02192	Siphovirus Gp157	NA
UHGV-2131244_43	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-2131244_43	Structural annotation	PF05565, NF002139	NA	NA
UHGV-2131244_44	PHROG	phrog_743	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2131244_44	UniRef90	UniRef90_R7IJX6	NA	NA
UHGV-2131244_44	eggNOG-mapper	1268622.AVS7_00674	NA	NA
UHGV-2131244_44	Structural annotation	PF05037, MF_00984, NF004512, COG2965	NA	NA
UHGV-2131244_45	PHROG	phrog_11324	nucleotide kinase	other
UHGV-2131244_45	UniRef90	UniRef90_UPI001D13CD93	NA	NA
UHGV-2131244_45	eggNOG-mapper	1003195.SCAT_1653	NA	NA
UHGV-2131244_45	Pfam	PF11753	NA	DUF3310
UHGV-2131244_46	KOfam	K07733	alpA; prophage regulatory protein	NA
UHGV-2131244_46	UniRef90	UniRef90_R7IKS1	Transcriptional regulator AlpA family	NA
UHGV-2131244_46	eggNOG-mapper	762983.HMPREF9444_01504	DNA excision	NA
UHGV-2131244_46	Pfam	PF05930	Prophage CP4-57 regulatory protein (AlpA)	Phage_AlpA
UHGV-2131244_46	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-2131244_46	Structural annotation	PF05930, NF033499, COG3311	NA	NA
UHGV-2131244_47	UniRef90	UniRef90_R7IN75	BRO family protein	NA
UHGV-2131244_47	eggNOG-mapper	742823.HMPREF9465_00904	Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-2131244_47	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-2131244_49	PHROG	phrog_87	metallo-protease	other
UHGV-2131244_49	UniRef90	UniRef90_UPI00067134E4	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-2131244_49	eggNOG-mapper	243233.MCA0678	IrrE N-terminal-like domain	NA
UHGV-2131244_49	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-2131244_49	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-2131244_49	Structural annotation	PF06114, COG2856	NA	NA
UHGV-2131244_50	PHROG	phrog_1	integrase	integration and excision
UHGV-2131244_50	UniRef90	UniRef90_A0A388S9N6	Bacteriophage P4 integrase	NA
UHGV-2131244_50	eggNOG-mapper	469610.HMPREF0189_01073	DNA integration	NA
UHGV-2131244_50	Pfam	PF13356	Arm DNA-binding domain	Arm-DNA-bind_3
UHGV-2131244_50	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2131244_50	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA