UHGV-2131402

Genome information

Genome length 33,979 bps

CDS count 53

Completeness 80.43% (medium-quality)

geNomad score 0.9747

Prediction confidence Confident

Genome information
Genome ID	UHGV-2131402
vOTU ID	vOTU-041628
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029634\|Ga0242800_100005\|provirus_481693_515671
BioSample	SAMN05545047
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	80.43% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9747
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	44.44
Jumbo phage	No

Genome content
Genome length	33,979 bps
GC content	40.65%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	94.78%
Average CDS length	610.19 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2131402_2	UniRef90	UniRef90_A0A415G6W5	Winged helix-turn-helix domain-containing protein	NA
UHGV-2131402_5	KOfam	K15352	pipB2; secreted effector protein PipB2	NA
UHGV-2131402_5	PHROG	phrog_7713	NA	unknown function
UHGV-2131402_5	UniRef90	UniRef90_UPI001D099B63	pentapeptide repeat-containing protein	NA
UHGV-2131402_5	eggNOG-mapper	768710.DesyoDRAFT_5248	Pentapeptide repeats (8 copies)	NA
UHGV-2131402_5	Pfam	PF00805	Pentapeptide repeats (8 copies)	Pentapeptide
UHGV-2131402_5	COG	COG1357	NA	NA
UHGV-2131402_7	PHROG	phrog_674	NA	unknown function
UHGV-2131402_7	UniRef90	UniRef90_UPI000830B788	NA	NA
UHGV-2131402_7	eggNOG-mapper	658655.HMPREF0988_02587	NA	NA
UHGV-2131402_7	Pfam	PF07083	NA	DUF1351
UHGV-2131402_7	Structural annotation	PF07083	NA	NA
UHGV-2131402_8	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-2131402_8	UniRef90	UniRef90_A0A8D9UGW3	DNA repair protein RAD52-like protein	NA
UHGV-2131402_8	eggNOG-mapper	742767.HMPREF9456_02052	NA	NA
UHGV-2131402_8	Structural annotation	PF04098, TIGR00607, COG5055	NA	NA
UHGV-2131402_9	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-2131402_9	eggNOG-mapper	1304866.K413DRAFT_1197	NA	NA
UHGV-2131402_9	Structural annotation	PF05772, NF007281	NA	NA
UHGV-2131402_10	PHROG	phrog_7566	NA	unknown function
UHGV-2131402_10	UniRef90	UniRef90_UPI001570B64C	phosphoenolpyruvate carboxykinase	NA
UHGV-2131402_10	eggNOG-mapper	1304866.K413DRAFT_1198	NA	NA
UHGV-2131402_11	Structural annotation	PF21715	NA	NA
UHGV-2131402_12	PHROG	phrog_16304	NA	unknown function
UHGV-2131402_12	UniRef90	UniRef90_UPI000B1808B0	conserved phage C-terminal domain-containing protein	NA
UHGV-2131402_12	eggNOG-mapper	411468.CLOSCI_00311	Transcriptional regulator	NA
UHGV-2131402_12	Pfam	PF19808	NA	DUF6291
UHGV-2131402_12	Pfam	PF09524	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
UHGV-2131402_12	NCBIFam	TIGR02220.1	phage conserved hypothetical protein, C-terminal domain	NA
UHGV-2131402_12	COG	COG1846	DNA-binding transcriptional regulator, MarR family	NA
UHGV-2131402_12	Structural annotation	PF19808	NA	NA
UHGV-2131402_13	PHROG	phrog_25488	NA	unknown function
UHGV-2131402_14	eggNOG-mapper	469596.HMPREF9488_03215	NA	NA
UHGV-2131402_14	Structural annotation	PF16475	NA	NA
UHGV-2131402_16	Structural annotation	PF18358	NA	NA
UHGV-2131402_22	PHROG	phrog_15198	NA	unknown function
UHGV-2131402_22	UniRef90	UniRef90_UPI001D05F86E	NA	NA
UHGV-2131402_22	Pfam	PF04448	NA	DUF551
UHGV-2131402_23	PHROG	phrog_986	RNA-binding protein	DNA, RNA and nucleotide metabolism
UHGV-2131402_23	UniRef90	UniRef90_UPI000A87E3C3	NA	NA
UHGV-2131402_23	eggNOG-mapper	1027396.LMOSA_9440	NA	NA
UHGV-2131402_23	Pfam	PF12961	NA	DUF3850
UHGV-2131402_23	Structural annotation	PF12961, MF_00684, NF003443, COG4043	NA	NA
UHGV-2131402_25	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-2131402_25	PHROG	phrog_1	integrase	integration and excision
UHGV-2131402_25	UniRef90	UniRef90_UPI0008297FBD	tyrosine-type recombinase/integrase	NA
UHGV-2131402_25	eggNOG-mapper	411468.CLOSCI_00297	Belongs to the 'phage' integrase family	NA
UHGV-2131402_25	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-2131402_25	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2131402_25	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-2131402_25	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-2131402_27	PHROG	phrog_6568	NA	unknown function
UHGV-2131402_29	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2131402_29	UniRef90	UniRef90_A0A3A9HG24	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-2131402_29	eggNOG-mapper	665950.HMPREF1025_02539	sigma factor activity	NA
UHGV-2131402_29	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-2131402_29	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-2131402_30	PHROG	phrog_9529	NA	unknown function
UHGV-2131402_30	UniRef90	UniRef90_UPI000836A084	NA	NA
UHGV-2131402_30	eggNOG-mapper	875454.BAEW01000017_gene1603	NA	NA
UHGV-2131402_30	Pfam	PF04480	NA	DUF559
UHGV-2131402_30	COG	COG2852	Very-short-patch-repair endonuclease	NA
UHGV-2131402_30	Structural annotation	PF04480, NF007294, COG2852	NA	NA
UHGV-2131402_31	PHROG	phrog_4962	NA	unknown function
UHGV-2131402_31	UniRef90	UniRef90_UPI000832D021	FRG domain-containing protein	NA
UHGV-2131402_31	eggNOG-mapper	999419.HMPREF1077_03428	FRG	NA
UHGV-2131402_31	Pfam	PF08867	FRG domain	FRG
UHGV-2131402_31	COG	COG4127	Predicted restriction endonuclease, Mrr-cat superfamily	NA
UHGV-2131402_32	PHROG	phrog_30856	NA	unknown function
UHGV-2131402_34	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-2131402_34	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-2131402_34	UniRef90	UniRef90_UPI000833FD0A	terminase small subunit	NA
UHGV-2131402_34	eggNOG-mapper	476272.RUMHYD_01754	Terminase small subunit	NA
UHGV-2131402_34	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-2131402_34	COG	COG3728	Phage terminase, small subunit	NA
UHGV-2131402_34	Structural annotation	PF03592, COG3728	NA	NA
UHGV-2131402_35	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2131402_35	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-2131402_35	UniRef90	UniRef90_UPI00082F8D2C	PBSX family phage terminase large subunit	NA
UHGV-2131402_35	eggNOG-mapper	1235799.C818_04217	Phage terminase large subunit	NA
UHGV-2131402_35	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-2131402_35	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2131402_35	COG	COG1783	Phage terminase large subunit	NA
UHGV-2131402_35	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-2131402_36	PHROG	phrog_533	portal protein	head and packaging
UHGV-2131402_36	UniRef90	UniRef90_A0A174L8Y1	Phage portal protein, putative, A118 family	NA
UHGV-2131402_36	eggNOG-mapper	1235799.C818_04218	NA	NA
UHGV-2131402_36	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-2131402_37	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2131402_37	UniRef90	UniRef90_UPI000834561E	phage minor capsid protein	NA
UHGV-2131402_37	eggNOG-mapper	411461.DORFOR_01164	NA	NA
UHGV-2131402_37	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2131402_37	COG	COG2369	NA	NA
UHGV-2131402_37	Structural annotation	PF06152	NA	NA
UHGV-2131402_38	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-2131402_38	UniRef90	UniRef90_UPI000831DA91	phage scaffolding protein	NA
UHGV-2131402_38	eggNOG-mapper	33035.JPJF01000030_gene2293	PFAM Phage minor structural	NA
UHGV-2131402_38	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-2131402_39	PHROG	phrog_267	major head protein	head and packaging
UHGV-2131402_39	eggNOG-mapper	1235799.C818_04223	NA	NA
UHGV-2131402_39	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-2131402_40	PHROG	phrog_541	head-tail adaptor	connector
UHGV-2131402_40	eggNOG-mapper	641112.ACOK01000073_gene2896	NA	NA
UHGV-2131402_41	PHROG	phrog_3366	NA	unknown function
UHGV-2131402_41	Pfam	PF20536	NA	DUF6751
UHGV-2131402_41	Structural annotation	PF20536	NA	NA
UHGV-2131402_42	PHROG	phrog_556	minor head protein	head and packaging
UHGV-2131402_42	UniRef90	UniRef90_UPI00083771E1	minor capsid protein	NA
UHGV-2131402_42	eggNOG-mapper	411461.DORFOR_01170	Minor capsid protein	NA
UHGV-2131402_42	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-2131402_42	Structural annotation	PF11114	NA	NA
UHGV-2131402_43	PHROG	phrog_3266	tail completion	connector
UHGV-2131402_43	Structural annotation	PF12691	NA	NA
UHGV-2131402_44	PHROG	phrog_820	major tail protein	tail
UHGV-2131402_44	UniRef90	UniRef90_A0A174M1L1	S-l_SbsC_C domain-containing protein	NA
UHGV-2131402_44	eggNOG-mapper	411461.DORFOR_01172	NA	NA
UHGV-2131402_44	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-2131402_45	PHROG	phrog_4450	NA	unknown function
UHGV-2131402_45	UniRef90	UniRef90_A0A3R5XYJ4	AP endonuclease	NA
UHGV-2131402_45	eggNOG-mapper	931276.Cspa_c07520	NA	NA
UHGV-2131402_45	Pfam	PF20378	NA	DUF6673
UHGV-2131402_45	Structural annotation	PF20378	NA	NA
UHGV-2131402_46	PHROG	phrog_706	NA	unknown function
UHGV-2131402_46	UniRef90	UniRef90_UPI00082E5062	bacteriophage Gp15 family protein	NA
UHGV-2131402_46	eggNOG-mapper	411461.DORFOR_01174	Bacteriophage Gp15 protein	NA
UHGV-2131402_46	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-2131402_46	Structural annotation	PF06854	NA	NA
UHGV-2131402_47	PHROG	phrog_13339	tail length tape measure protein	tail
UHGV-2131402_47	UniRef90	UniRef90_UPI001D06BDCE	phage tail tape measure protein	NA
UHGV-2131402_47	eggNOG-mapper	411490.ANACAC_00710	Phage tail tape measure protein, TP901 family	NA
UHGV-2131402_47	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-2131402_47	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-2131402_47	COG	COG5283	Phage-related tail protein	NA
UHGV-2131402_47	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-2131402_48	PHROG	phrog_36410	NA	unknown function
UHGV-2131402_48	UniRef90	UniRef90_UPI00082BAA99	phage tail family protein	NA
UHGV-2131402_48	eggNOG-mapper	33035.JPJF01000033_gene2264	PFAM Phage tail protein	NA
UHGV-2131402_48	COG	COG4722	Phage-related protein YomH	NA
UHGV-2131402_48	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-2131402_49	PHROG	phrog_5339	virion structural protein	head and packaging
UHGV-2131402_49	eggNOG-mapper	1499683.CCFF01000017_gene2563	COG NOG18825 non supervised orthologous group	NA
UHGV-2131402_49	Structural annotation	PF21567	NA	NA
UHGV-2131402_50	PHROG	phrog_538	minor tail protein	tail
UHGV-2131402_50	UniRef90	UniRef90_UPI0008305645	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-2131402_50	eggNOG-mapper	33035.JPJF01000033_gene2262	NA	NA
UHGV-2131402_50	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-2131402_50	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-2131402_51	PHROG	phrog_38707	NA	unknown function
UHGV-2131402_51	UniRef90	UniRef90_UPI00082EFB7A	tail fiber protein	NA
UHGV-2131402_51	eggNOG-mapper	33035.JPJF01000033_gene2261	tail collar domain protein	NA
UHGV-2131402_51	Pfam	PF03406	Phage tail fibre repeat	Phage_fiber_2
UHGV-2131402_51	COG	COG4675	Phage tail collar domain	NA
UHGV-2131402_52	COG	COG5301	Phage-related tail fiber protein	NA