UHGV-2131725

Genome information

Genome length 33,219 bps

CDS count 53

Completeness 95.36% (high-quality)

geNomad score 0.9808

Prediction confidence Confident

Genome information
Genome ID	UHGV-2131725
vOTU ID	vOTU-010760
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029707\|Ga0245244_100417\|provirus_19469_52687
BioSample	SAMEA3449295
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	95.36% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9808
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	34.46
Jumbo phage	No

Genome content
Genome length	33,219 bps
GC content	55.03%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	91.76%
Average CDS length	577.08 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2131725_1	KOfam	K14059	int; integrase	NA
UHGV-2131725_1	PHROG	phrog_1	integrase	integration and excision
UHGV-2131725_1	UniRef90	UniRef90_A0A2Z4QB94	Tyr recombinase domain-containing protein	NA
UHGV-2131725_1	eggNOG-mapper	626523.GCWU000342_00320	Belongs to the 'phage' integrase family	NA
UHGV-2131725_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2131725_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2131725_1	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-2131725_2	PHROG	phrog_3291	NA	unknown function
UHGV-2131725_3	PHROG	phrog_1758	acetyltransferase	other
UHGV-2131725_3	UniRef90	UniRef90_A0A1Y4M8L7	N-acetyltransferase	NA
UHGV-2131725_3	eggNOG-mapper	272563.CD630_29260	acetyltransferase	NA
UHGV-2131725_3	COG	COG0454	N-acetyltransferase, GNAT superfamily (includes histone acetyltransferase HPA2)	NA
UHGV-2131725_3	Structural annotation	PF13673, MF_02210, NF000360, COG2153	NA	NA
UHGV-2131725_5	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-2131725_5	PHROG	phrog_1373	transcriptional regulator	transcription regulation
UHGV-2131725_5	UniRef90	UniRef90_UPI00051ABD2F	helix-turn-helix domain-containing protein	NA
UHGV-2131725_5	eggNOG-mapper	1280688.AUJB01000009_gene1936	Helix-turn-helix XRE-family like proteins	NA
UHGV-2131725_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2131725_5	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-2131725_6	Pfam	PF05973	NA	Gp49
UHGV-2131725_6	Structural annotation	PF05973, TIGR02683, COG4683	NA	NA
UHGV-2131725_7	Structural annotation	PF21227	NA	NA
UHGV-2131725_8	KOfam	K07448	mrr; restriction system protein	NA
UHGV-2131725_8	PHROG	phrog_19856	NA	unknown function
UHGV-2131725_8	UniRef90	UniRef90_UPI001294DFE1	restriction endonuclease	NA
UHGV-2131725_8	eggNOG-mapper	1235790.C805_00010	Restriction endonuclease	NA
UHGV-2131725_8	PADLOC	ZorD1_00005	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-2131725_8	Pfam	PF04471	Restriction endonuclease	Mrr_cat
UHGV-2131725_8	COG	COG1787	Endonuclease, HJR/Mrr/RecB family	NA
UHGV-2131725_8	Structural annotation	PF04471, MF_00722, NF040854, COG1787	NA	NA
UHGV-2131725_9	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-2131725_9	UniRef90	UniRef90_R5AVU4	CI-like repressor	NA
UHGV-2131725_9	eggNOG-mapper	1480694.DC28_13555	sequence-specific DNA binding	NA
UHGV-2131725_9	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-2131725_9	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-2131725_9	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-2131725_10	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2131725_10	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-2131725_10	UniRef90	UniRef90_A0A174LY22	Antitoxin PezA	NA
UHGV-2131725_10	eggNOG-mapper	445972.ANACOL_03315	NA	NA
UHGV-2131725_10	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2131725_10	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2131725_10	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-2131725_13	PHROG	phrog_750	NA	unknown function
UHGV-2131725_13	Structural annotation	PF13835, NF040858	NA	NA
UHGV-2131725_14	PHROG	phrog_585	NA	unknown function
UHGV-2131725_14	Pfam	PF10711	NA	DUF2513
UHGV-2131725_15	Structural annotation	PF21291, TIGR03070, COG3655	NA	NA
UHGV-2131725_16	KOfam	K06284	abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes	NA
UHGV-2131725_16	PHROG	phrog_4681	antitoxin from a toxin-antitoxin system	moron, auxiliary metabolic gene and host takeover
UHGV-2131725_16	UniRef90	UniRef90_A0A841SSA0	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA
UHGV-2131725_16	eggNOG-mapper	1157490.EL26_11905	Antidote-toxin recognition MazE, bacterial antitoxin	NA
UHGV-2131725_16	Pfam	PF04014	Antidote-toxin recognition MazE, bacterial antitoxin	MazE_antitoxin
UHGV-2131725_16	NCBIFam	TIGR01439.1	transcriptional regulator, AbrB family	NA
UHGV-2131725_16	COG	COG2002	Bifunctional DNA-binding transcriptional regulator of stationary/sporulation/toxin gene expression and antitoxin component of the YhaV-PrlF toxin-antitoxin module	NA
UHGV-2131725_16	Structural annotation	PF15937, TIGR01439, NF004424, COG2002	NA	NA
UHGV-2131725_19	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2131725_19	eggNOG-mapper	411470.RUMGNA_02047	NA	NA
UHGV-2131725_19	Structural annotation	PF21578	NA	NA
UHGV-2131725_20	KOfam	K03700	recU; recombination protein U	NA
UHGV-2131725_20	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2131725_20	UniRef90	UniRef90_A0A1H0W5Y9	Holliday junction resolvase RecU	NA
UHGV-2131725_20	eggNOG-mapper	1203606.HMPREF1526_01884	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	NA
UHGV-2131725_20	Pfam	PF03838	Recombination protein U	RecU
UHGV-2131725_20	COG	COG3331	Penicillin-binding protein-related factor A, putative recombinase	NA
UHGV-2131725_20	Structural annotation	PF03838, MF_00130, NF002581, COG3331	NA	NA
UHGV-2131725_21	eggNOG-mapper	1232449.BAHV02000016_gene1829	NA	NA
UHGV-2131725_22	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-2131725_22	PHROG	phrog_56	DNA methyltransferase	other
UHGV-2131725_22	UniRef90	UniRef90_R9MCP5	DNA adenine methylase	NA
UHGV-2131725_22	eggNOG-mapper	1235799.C818_02654	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-2131725_22	PADLOC	MTase_II_00030	Type II methyltransferase	RM
UHGV-2131725_22	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-2131725_22	COG	COG0338	DNA-adenine methylase	NA
UHGV-2131725_22	Structural annotation	PF02086, MF_01872, NF008152, COG0338	NA	NA
UHGV-2131725_23	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-2131725_23	UniRef90	UniRef90_R6MCS9	NA	NA
UHGV-2131725_23	eggNOG-mapper	1519439.JPJG01000059_gene1910	NA	NA
UHGV-2131725_24	PHROG	phrog_1029	NA	unknown function
UHGV-2131725_24	eggNOG-mapper	1203606.HMPREF1526_01890	NA	NA
UHGV-2131725_24	Structural annotation	PF10065, COG5532	NA	NA
UHGV-2131725_25	PHROG	phrog_5781	NA	unknown function
UHGV-2131725_25	UniRef90	UniRef90_A0A810Q4L2	NA	NA
UHGV-2131725_25	eggNOG-mapper	573061.Clocel_3558	NA	NA
UHGV-2131725_25	Pfam	PF14359	NA	DUF4406
UHGV-2131725_25	COG	COG3613	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-2131725_25	Structural annotation	PF14359, MF_03036, TIGR03646, COG3613	NA	NA
UHGV-2131725_26	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2131725_26	UniRef90	UniRef90_UPI001C10AB33	NA	NA
UHGV-2131725_26	eggNOG-mapper	428125.CLOLEP_01806	NA	NA
UHGV-2131725_26	Pfam	PF07374	NA	DUF1492
UHGV-2131725_26	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-2131725_27	Structural annotation	PF10922, MF_00839	NA	NA
UHGV-2131725_28	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2131725_28	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-2131725_28	UniRef90	UniRef90_A0A416S378	PBSX family phage terminase large subunit	NA
UHGV-2131725_28	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-2131725_28	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-2131725_28	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-2131725_28	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-2131725_28	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2131725_28	COG	COG1783	Phage terminase large subunit	NA
UHGV-2131725_28	Structural annotation	PF04466, PF17288, PF03592, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-2131725_29	PHROG	phrog_1233	NA	unknown function
UHGV-2131725_29	eggNOG-mapper	1415774.U728_832	NA	NA
UHGV-2131725_29	Structural annotation	PF13058	NA	NA
UHGV-2131725_30	PHROG	phrog_533	portal protein	head and packaging
UHGV-2131725_30	UniRef90	UniRef90_A0A173TY48	Phage portal protein, putative, A118 family	NA
UHGV-2131725_30	eggNOG-mapper	33035.JPJF01000106_gene3135	phage minor capsid protein	NA
UHGV-2131725_30	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-2131725_31	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2131725_31	UniRef90	UniRef90_A0A3D4T830	Phage capsid protein	NA
UHGV-2131725_31	eggNOG-mapper	476272.RUMHYD_01761	Phage minor capsid protein 2	NA
UHGV-2131725_31	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2131725_31	COG	COG2369	NA	NA
UHGV-2131725_32	Structural annotation	PF21279, NF040942	NA	NA
UHGV-2131725_33	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-2131725_33	UniRef90	UniRef90_UPI001C0EBA51	phage scaffolding protein	NA
UHGV-2131725_33	eggNOG-mapper	1125725.HMPREF1325_1331	Phage minor structural protein GP20	NA
UHGV-2131725_33	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-2131725_33	Structural annotation	PF06810	NA	NA
UHGV-2131725_34	PHROG	phrog_267	major head protein	head and packaging
UHGV-2131725_34	eggNOG-mapper	1235799.C818_04223	NA	NA
UHGV-2131725_34	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-2131725_35	PHROG	phrog_541	head-tail adaptor	connector
UHGV-2131725_35	eggNOG-mapper	476272.RUMHYD_01778	NA	NA
UHGV-2131725_36	PHROG	phrog_3366	NA	unknown function
UHGV-2131725_36	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-2131725_37	PHROG	phrog_556	minor head protein	head and packaging
UHGV-2131725_37	UniRef90	UniRef90_A0A1H7MNM8	Minor capsid protein	NA
UHGV-2131725_37	eggNOG-mapper	476272.RUMHYD_01780	NA	NA
UHGV-2131725_37	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-2131725_37	Structural annotation	PF11114	NA	NA
UHGV-2131725_38	PHROG	phrog_3266	tail completion	connector
UHGV-2131725_38	eggNOG-mapper	476272.RUMHYD_01781	NA	NA
UHGV-2131725_38	Structural annotation	PF12691	NA	NA
UHGV-2131725_39	PHROG	phrog_3099	NA	unknown function
UHGV-2131725_39	eggNOG-mapper	693746.OBV_18150	NA	NA
UHGV-2131725_39	Structural annotation	PF10772, TIGR02126, COG3499	NA	NA
UHGV-2131725_40	PHROG	phrog_11299	NA	unknown function
UHGV-2131725_40	eggNOG-mapper	1449050.JNLE01000003_gene3883	NA	NA
UHGV-2131725_40	Structural annotation	PF10666	NA	NA
UHGV-2131725_41	PHROG	phrog_706	NA	unknown function
UHGV-2131725_41	UniRef90	UniRef90_UPI00164D7633	Gp15 family bacteriophage protein	NA
UHGV-2131725_41	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-2131725_41	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-2131725_41	Structural annotation	PF06854	NA	NA
UHGV-2131725_42	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-2131725_42	UniRef90	UniRef90_A0A810PX76	Phage tail tape measure protein	NA
UHGV-2131725_42	eggNOG-mapper	1235797.C816_04182	SLT domain	NA
UHGV-2131725_42	COG	COG1511	NA	NA
UHGV-2131725_43	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-2131725_44	PHROG	phrog_6616	tail protein	tail
UHGV-2131725_44	Structural annotation	PF13550, PF09931, NF033848, COG3500	NA	NA
UHGV-2131725_45	PHROG	phrog_15594	NA	unknown function
UHGV-2131725_45	eggNOG-mapper	1118055.CAGU01000013_gene763	NA	NA
UHGV-2131725_45	Structural annotation	PF16640, TIGR04488	NA	NA
UHGV-2131725_46	PHROG	phrog_31538	NA	unknown function
UHGV-2131725_47	PHROG	phrog_13589	NA	unknown function
UHGV-2131725_47	eggNOG-mapper	742733.HMPREF9469_05009	NA	NA
UHGV-2131725_48	UniRef90	UniRef90_UPI001BF10870	Tyrosine-protein phosphatase	NA
UHGV-2131725_48	eggNOG-mapper	610130.Closa_0587	Tyrosine phosphatase family	NA
UHGV-2131725_48	Pfam	PF13350	Tyrosine phosphatase family	Y_phosphatase3
UHGV-2131725_48	COG	COG2365	Protein tyrosine/serine phosphatase Oca4	NA
UHGV-2131725_48	Structural annotation	PF13350, PF18998, PF17425, TIGR01244, COG2365	NA	NA
UHGV-2131725_49	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2131725_49	PHROG	phrog_9611	endolysin	lysis
UHGV-2131725_49	UniRef90	UniRef90_R5B1Z3	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-2131725_49	eggNOG-mapper	97138.C820_00738	Ami_2	NA
UHGV-2131725_49	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-2131725_49	Pfam	PF00395	S-layer homology domain	SLH
UHGV-2131725_49	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-2131725_49	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-2131725_50	PHROG	phrog_1863	NA	unknown function
UHGV-2131725_50	UniRef90	UniRef90_UPI001F223E8B	hemolysin XhlA family protein	NA
UHGV-2131725_50	eggNOG-mapper	1226322.HMPREF1545_04027	NA	NA
UHGV-2131725_51	PHROG	phrog_1129	holin	lysis
UHGV-2131725_51	UniRef90	UniRef90_R5D220	Putative holin	NA
UHGV-2131725_51	eggNOG-mapper	742740.HMPREF9474_03522	NA	NA
UHGV-2131725_51	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-2131725_51	Structural annotation	PF06946	NA	NA
UHGV-2131725_52	KOfam	K07339	hicA; mRNA interferase HicA [EC:3.1.-.-]	NA
UHGV-2131725_52	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-2131725_52	UniRef90	UniRef90_UPI0005D18D19	type II toxin-antitoxin system HicA family toxin	NA
UHGV-2131725_52	eggNOG-mapper	641112.ACOK01000116_gene2618	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-2131725_52	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-2131725_52	COG	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-2131725_52	Structural annotation	PF07927, COG1724	NA	NA
UHGV-2131725_53	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-2131725_53	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-2131725_53	UniRef90	UniRef90_A0A564UIL3	HicB-like domain-containing protein	NA
UHGV-2131725_53	eggNOG-mapper	641112.ACOK01000116_gene2617	HicB_like antitoxin of bacterial toxin-antitoxin system	NA
UHGV-2131725_53	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-2131725_53	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-2131725_53	Structural annotation	PF15919, COG1598	NA	NA