UHGV-2131839

Genome information

vOTU vOTU-071922

Genome length 37,075 bps

CDS count 52

Completeness 99.53% (high-quality)

geNomad score 0.9733

Prediction confidence Confident

Genome information
Genome ID	UHGV-2131839
vOTU ID	vOTU-071922
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029682\|Ga0242767_100296\|provirus_11419_48493
BioSample	SAMN05545013
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.53% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	27
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9733
Virus hallmark genes (geNomad)	17
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	78.62
Jumbo phage	No

Genome content
Genome length	37,075 bps
GC content	52.15%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	91.65%
Average CDS length	659.31 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2131839_1	PHROG	phrog_10797	NA	unknown function
UHGV-2131839_1	UniRef90	UniRef90_A0A0X8K8T8	Glycoprotease	NA
UHGV-2131839_1	eggNOG-mapper	568816.Acin_1214	NA	NA
UHGV-2131839_1	Structural annotation	PF06531	NA	NA
UHGV-2131839_2	PHROG	phrog_5867	endolysin	lysis
UHGV-2131839_2	UniRef90	UniRef90_UPI001C433E67	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2131839_2	eggNOG-mapper	500635.MITSMUL_03167	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2131839_2	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-2131839_2	Structural annotation	MF_04111	NA	NA
UHGV-2131839_5	KOfam	K14059	int; integrase	NA
UHGV-2131839_5	PHROG	phrog_1	integrase	integration and excision
UHGV-2131839_5	UniRef90	UniRef90_UPI000404EDAD	site-specific integrase	NA
UHGV-2131839_5	eggNOG-mapper	568816.Acin_1821	Phage integrase family	NA
UHGV-2131839_5	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2131839_5	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2131839_5	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-2131839_6	PHROG	phrog_24267	NA	unknown function
UHGV-2131839_6	UniRef90	UniRef90_G4Q8U0	Side tail fiber protein from lambdoid prophage Rac	NA
UHGV-2131839_6	eggNOG-mapper	568816.Acin_1822	Collagen triple helix repeat (20 copies)	NA
UHGV-2131839_6	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA
UHGV-2131839_8	PHROG	phrog_32639	NA	unknown function
UHGV-2131839_8	eggNOG-mapper	568816.Acin_1300	NA	NA
UHGV-2131839_9	PHROG	phrog_5717	tail protein	tail
UHGV-2131839_9	UniRef90	UniRef90_UPI0008EFFA34	phage tail protein	NA
UHGV-2131839_9	eggNOG-mapper	568816.Acin_1301	tail collar domain protein	NA
UHGV-2131839_9	COG	COG4675	Phage tail collar domain	NA
UHGV-2131839_9	Structural annotation	PF12571, MF_04106, COG5301	NA	NA
UHGV-2131839_10	PHROG	phrog_521	tail protein	tail
UHGV-2131839_10	UniRef90	UniRef90_UPI0008E678DD	NA	NA
UHGV-2131839_10	eggNOG-mapper	568816.Acin_1302	NA	NA
UHGV-2131839_10	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-2131839_10	COG	COG3778	NA	NA
UHGV-2131839_10	Structural annotation	PF10076, TIGR02242, COG3778	NA	NA
UHGV-2131839_11	PHROG	phrog_6	baseplate protein	tail
UHGV-2131839_11	UniRef90	UniRef90_UPI0008F32837	baseplate J/gp47 family protein	NA
UHGV-2131839_11	eggNOG-mapper	1273103.NM10_00999	Baseplate J-like protein	NA
UHGV-2131839_11	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-2131839_11	COG	COG3299	NA	NA
UHGV-2131839_11	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-2131839_12	PHROG	phrog_120	baseplate protein	tail
UHGV-2131839_12	UniRef90	UniRef90_UPI0008EA0D5A	NA	NA
UHGV-2131839_12	eggNOG-mapper	1273103.NM10_01004	NA	NA
UHGV-2131839_12	Pfam	PF10934	NA	DUF2634
UHGV-2131839_12	Structural annotation	PF10934, MF_02010, TIGR03357, COG3628	NA	NA
UHGV-2131839_13	PHROG	phrog_579	NA	unknown function
UHGV-2131839_13	UniRef90	UniRef90_UPI000417DD77	NA	NA
UHGV-2131839_13	eggNOG-mapper	568816.Acin_1961	NA	NA
UHGV-2131839_13	Pfam	PF10844	NA	DUF2577
UHGV-2131839_13	Structural annotation	PF10844, TIGR00523	NA	NA
UHGV-2131839_14	PHROG	phrog_400	tail protein	tail
UHGV-2131839_14	UniRef90	UniRef90_I0GWS1	Phage related protein	NA
UHGV-2131839_14	eggNOG-mapper	568816.Acin_1331	NLP P60 protein	NA
UHGV-2131839_14	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-2131839_14	Structural annotation	PF14594, PF00877, NF033848, NF008096, COG3500	NA	NA
UHGV-2131839_15	PHROG	phrog_5184	NA	unknown function
UHGV-2131839_15	UniRef90	UniRef90_UPI0018973606	LysM peptidoglycan-binding domain-containing protein	NA
UHGV-2131839_15	eggNOG-mapper	568816.Acin_1963	LysM domain	NA
UHGV-2131839_15	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-2131839_15	Structural annotation	PF19266, TIGR02126, COG3499	NA	NA
UHGV-2131839_16	PHROG	phrog_991	tail length tape measure protein	tail
UHGV-2131839_16	UniRef90	UniRef90_UPI0008E2892B	phage tail tape measure protein	NA
UHGV-2131839_16	eggNOG-mapper	568816.Acin_1333	Phage-related minor tail protein	NA
UHGV-2131839_16	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-2131839_16	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-2131839_16	COG	COG5283	Phage-related tail protein	NA
UHGV-2131839_16	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-2131839_18	PHROG	phrog_389	tail protein XkdN-like	tail
UHGV-2131839_18	UniRef90	UniRef90_I0GWR7	Phage related protein	NA
UHGV-2131839_18	eggNOG-mapper	568816.Acin_1336	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-2131839_18	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-2131839_18	Structural annotation	PF08890	NA	NA
UHGV-2131839_19	PHROG	phrog_365	tail protein	tail
UHGV-2131839_19	UniRef90	UniRef90_UPI0008E6ECEF	phage tail tube protein	NA
UHGV-2131839_19	eggNOG-mapper	568816.Acin_1337	Phage tail tube protein	NA
UHGV-2131839_19	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-2131839_19	Structural annotation	PF09393, TIGR02241, COG3498	NA	NA
UHGV-2131839_20	PHROG	phrog_1480	tail sheath	tail
UHGV-2131839_20	UniRef90	UniRef90_UPI001D0053A4	phage tail sheath subtilisin-like domain-containing protein	NA
UHGV-2131839_20	eggNOG-mapper	568816.Acin_1338	Phage tail sheath C-terminal domain	NA
UHGV-2131839_20	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-2131839_20	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-2131839_20	Structural annotation	PF10758, COG3497	NA	NA
UHGV-2131839_21	PHROG	phrog_525	NA	unknown function
UHGV-2131839_21	eggNOG-mapper	1408324.JNJK01000006_gene1386	NA	NA
UHGV-2131839_21	Pfam	PF20765	NA	DUF6838
UHGV-2131839_21	Structural annotation	PF20765, COG5003	NA	NA
UHGV-2131839_22	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2131839_22	UniRef90	UniRef90_UPI0008EBDF4A	HK97 gp10 family phage protein	NA
UHGV-2131839_22	eggNOG-mapper	293826.Amet_2418	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-2131839_22	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-2131839_22	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-2131839_23	PHROG	phrog_25	head closure Hc1	connector
UHGV-2131839_23	UniRef90	UniRef90_UPI0008E4FD65	phage head closure protein	NA
UHGV-2131839_23	eggNOG-mapper	568816.Acin_1341	Phage head-tail joining protein	NA
UHGV-2131839_23	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-2131839_23	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-2131839_23	COG	COG5614	Phage head-tail adaptor	NA
UHGV-2131839_24	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-2131839_24	UniRef90	UniRef90_UPI001EDE080C	head-tail connector protein	NA
UHGV-2131839_24	eggNOG-mapper	861450.HMPREF0080_02048	Phage gp6-like head-tail connector protein	NA
UHGV-2131839_24	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-2131839_24	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-2131839_24	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-2131839_25	PHROG	phrog_10	major head protein	head and packaging
UHGV-2131839_25	UniRef90	UniRef90_UPI001D01823D	phage major capsid protein	NA
UHGV-2131839_25	eggNOG-mapper	1341151.ASZU01000004_gene260	Phage capsid family	NA
UHGV-2131839_25	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2131839_25	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2131839_25	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2131839_25	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2131839_26	KOfam	K06904	NA	NA
UHGV-2131839_26	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-2131839_26	UniRef90	UniRef90_UPI000417BB79	HK97 family phage prohead protease	NA
UHGV-2131839_26	eggNOG-mapper	1235755.ANAM01000006_gene2374	Caudovirus prohead serine protease	NA
UHGV-2131839_26	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-2131839_26	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-2131839_26	COG	COG3740	Phage head maturation protease	NA
UHGV-2131839_26	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-2131839_27	PHROG	phrog_12	portal protein	head and packaging
UHGV-2131839_27	UniRef90	UniRef90_UPI0008E4F720	phage portal protein	NA
UHGV-2131839_27	eggNOG-mapper	1094508.Tsac_2426	Portal protein	NA
UHGV-2131839_27	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2131839_27	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2131839_27	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-2131839_28	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2131839_28	UniRef90	UniRef90_UPI0008F04707	terminase large subunit	NA
UHGV-2131839_28	eggNOG-mapper	1232428.CAVO010000003_gene1012	Phage Terminase	NA
UHGV-2131839_28	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-2131839_28	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2131839_28	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2131839_28	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-2131839_29	PHROG	phrog_1066	NA	unknown function
UHGV-2131839_29	eggNOG-mapper	397290.C810_00417	NA	NA
UHGV-2131839_29	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-2131839_30	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-2131839_30	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2131839_30	UniRef90	UniRef90_UPI00047CFB61	HNH endonuclease	NA
UHGV-2131839_30	eggNOG-mapper	1211814.CAPG01000074_gene3460	HNH endonuclease	NA
UHGV-2131839_30	Pfam	PF01844	HNH endonuclease	HNH
UHGV-2131839_30	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2131839_31	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2131839_31	UniRef90	UniRef90_UPI001959B6F9	NA	NA
UHGV-2131839_31	eggNOG-mapper	679201.HMPREF9334_00472	NA	NA
UHGV-2131839_31	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-2131839_32	PHROG	phrog_236	nucleotide kinase	other
UHGV-2131839_32	UniRef90	UniRef90_UPI001C432084	NA	NA
UHGV-2131839_32	eggNOG-mapper	1033743.CAES01000020_gene3148	NA	NA
UHGV-2131839_32	Pfam	PF11753	NA	DUF3310
UHGV-2131839_37	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2131839_37	UniRef90	UniRef90_A0A841R0Q1	Holliday junction resolvase	NA
UHGV-2131839_37	eggNOG-mapper	1123250.KB908417_gene653	NA	NA
UHGV-2131839_37	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA
UHGV-2131839_38	eggNOG-mapper	568816.Acin_1246	NA	NA
UHGV-2131839_39	KOfam	K07505	repA; regulatory protein RepA	NA
UHGV-2131839_39	PHROG	phrog_2597	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-2131839_39	UniRef90	UniRef90_G4Q9B5	RecA-family ATPase	NA
UHGV-2131839_39	eggNOG-mapper	568816.Acin_1395	Primase C terminal 2 (PriCT-2)	NA
UHGV-2131839_39	Pfam	PF08707	Primase C terminal 2 (PriCT-2)	PriCT_2
UHGV-2131839_39	Pfam	PF13481	AAA domain	AAA_25
UHGV-2131839_39	COG	COG3598	RecA-family ATPase	NA
UHGV-2131839_39	Structural annotation	PF13481, PF16793, PF08220, MF_00350, MF_00700, NF006606, NF001641, COG3598, COG3285	NA	NA
UHGV-2131839_40	KOfam	K17677	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	NA
UHGV-2131839_40	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2131839_40	UniRef90	UniRef90_A0A8D5A5D7	Putative DEAD box family helicase, phage associated	NA
UHGV-2131839_40	eggNOG-mapper	568816.Acin_1396	helicase superfamily c-terminal domain	NA
UHGV-2131839_40	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-2131839_40	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-2131839_40	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-2131839_40	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-2131839_40	Structural annotation	PF04851, PF16203, MF_01489, NF008521, COG1061	NA	NA
UHGV-2131839_41	PHROG	phrog_2698	NA	unknown function
UHGV-2131839_41	UniRef90	UniRef90_G4Q9B7	NA	NA
UHGV-2131839_41	eggNOG-mapper	568816.Acin_1397	NA	NA
UHGV-2131839_41	Structural annotation	PF05037	NA	NA
UHGV-2131839_42	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2131839_42	UniRef90	UniRef90_UPI00195E1D01	AAA family ATPase	NA
UHGV-2131839_42	eggNOG-mapper	568816.Acin_1398	AAA domain	NA
UHGV-2131839_42	Pfam	PF13479	AAA domain	AAA_24
UHGV-2131839_42	Structural annotation	PF13479, MF_00268, TIGR01618, COG0468	NA	NA
UHGV-2131839_43	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-2131839_43	PHROG	phrog_1499	NA	unknown function
UHGV-2131839_43	UniRef90	UniRef90_G4Q2G6	AAA_23 domain-containing protein	NA
UHGV-2131839_43	eggNOG-mapper	568816.Acin_1400	AAA ATPase domain	NA
UHGV-2131839_43	Pfam	PF13476	AAA domain	AAA_23
UHGV-2131839_43	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-2131839_43	Structural annotation	PF11398, MF_00365, TIGR00634, COG0497	NA	NA
UHGV-2131839_46	UniRef90	UniRef90_UPI00094F0146	helix-turn-helix domain-containing protein	NA
UHGV-2131839_46	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-2131839_46	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2131839_46	Structural annotation	PF01381, PF05339, MF_00535, NF041951, COG3655, COG3093	NA	NA
UHGV-2131839_47	PHROG	phrog_7735	excisionase	integration and excision
UHGV-2131839_47	UniRef90	UniRef90_UPI0008E316C6	helix-turn-helix domain-containing protein	NA
UHGV-2131839_47	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-2131839_47	Structural annotation	PF12728, MF_01155, NF033787, COG3311	NA	NA
UHGV-2131839_48	UniRef90	UniRef90_UPI0008EA6BA1	helix-turn-helix domain-containing protein	NA
UHGV-2131839_48	eggNOG-mapper	706434.HMPREF9429_00554	Helix-turn-helix XRE-family like proteins	NA
UHGV-2131839_48	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2131839_48	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-2131839_49	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2131839_49	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2131839_49	UniRef90	UniRef90_UPI0008F3F074	helix-turn-helix transcriptional regulator	NA
UHGV-2131839_49	eggNOG-mapper	568816.Acin_1404	carbohydrate binding	NA
UHGV-2131839_49	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2131839_49	COG	COG2390	DNA-binding transcriptional regulator LsrR, DeoR family	NA
UHGV-2131839_49	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-2131839_50	PHROG	phrog_20936	NA	unknown function
UHGV-2131839_50	UniRef90	UniRef90_UPI000F8E443B	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-2131839_50	Structural annotation	PF06114	NA	NA
UHGV-2131839_51	KOfam	K02342	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	NA
UHGV-2131839_51	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-2131839_51	UniRef90	UniRef90_UPI000685BB22	3'-5' exoribonuclease	NA
UHGV-2131839_51	eggNOG-mapper	945713.IALB_1936	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease	NA
UHGV-2131839_51	PADLOC	cd06127	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
UHGV-2131839_51	Pfam	PF00929	Exonuclease	RNase_T
UHGV-2131839_51	NCBIFam	TIGR00573.1	exonuclease, DNA polymerase III, epsilon subunit family	NA
UHGV-2131839_51	COG	COG0847	DNA polymerase III, epsilon subunit or related 3'-5' exonuclease	NA
UHGV-2131839_51	Structural annotation	PF00929, MF_00157, NF004844, COG0847	NA	NA
UHGV-2131839_52	KOfam	K14059	int; integrase	NA
UHGV-2131839_52	PHROG	phrog_1	integrase	integration and excision
UHGV-2131839_52	UniRef90	UniRef90_UPI001D00309B	site-specific integrase	NA
UHGV-2131839_52	eggNOG-mapper	568816.Acin_1406	Belongs to the 'phage' integrase family	NA
UHGV-2131839_52	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-2131839_52	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2131839_52	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2131839_52	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA