UHGV-2131933

Genome information

Genome length 37,799 bps

CDS count 58

Completeness 99.90% (high-quality)

geNomad score 0.9817

Prediction confidence Confident

Genome information
Genome ID	UHGV-2131933
vOTU ID	vOTU-070967
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029615\|Ga0245146_100121\|provirus_61194_98992
BioSample	SAMEA3449198
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9817
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	50.04
Jumbo phage	No

Genome content
Genome length	37,799 bps
GC content	42.47%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	95.01%
Average CDS length	622.19 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2131933_1	UniRef90	UniRef90_D5HF53	HTH cro/C1-type domain-containing protein	NA
UHGV-2131933_2	KOfam	K07273	acm; lysozyme	NA
UHGV-2131933_2	PHROG	phrog_291	endolysin	lysis
UHGV-2131933_2	UniRef90	UniRef90_A0A173W541	Lysozyme M1	NA
UHGV-2131933_2	eggNOG-mapper	411474.COPEUT_02639	hydrolase, family 25	NA
UHGV-2131933_2	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-2131933_2	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-2131933_2	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-2131933_2	Structural annotation	PF01183, PF01476, TIGR02899, COG3757, COG1388	NA	NA
UHGV-2131933_3	PHROG	phrog_18218	NA	unknown function
UHGV-2131933_3	UniRef90	UniRef90_A0A374AVT4	Ribonuclease	NA
UHGV-2131933_3	eggNOG-mapper	411474.COPEUT_02638	NA	NA
UHGV-2131933_3	Structural annotation	PF06946	NA	NA
UHGV-2131933_4	PHROG	phrog_1009	NA	unknown function
UHGV-2131933_4	UniRef90	UniRef90_A0A3A6JFT7	Branched-chain amino acid ABC transporter permease	NA
UHGV-2131933_4	eggNOG-mapper	742765.HMPREF9457_03364	NA	NA
UHGV-2131933_5	PHROG	phrog_9994	NA	unknown function
UHGV-2131933_5	eggNOG-mapper	1280698.AUJS01000007_gene1050	NA	NA
UHGV-2131933_5	Pfam	PF11839	Alanine-zipper, major outer membrane lipoprotein	Alanine_zipper
UHGV-2131933_5	Structural annotation	NF012201	NA	NA
UHGV-2131933_6	PHROG	phrog_538	minor tail protein	tail
UHGV-2131933_6	UniRef90	UniRef90_A0A1C5PP83	Phage-related holin (Lysis protein)	NA
UHGV-2131933_6	eggNOG-mapper	1256908.HMPREF0373_00466	NA	NA
UHGV-2131933_6	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-2131933_6	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-2131933_7	UniRef90	UniRef90_UPI0015709E93	phage tail protein	NA
UHGV-2131933_7	eggNOG-mapper	1256908.HMPREF0373_00467	NA	NA
UHGV-2131933_7	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-2131933_8	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-2131933_8	eggNOG-mapper	536233.CLO_1577	tape measure	NA
UHGV-2131933_8	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-2131933_8	Structural annotation	PF20155, MF_04138, COG3941	NA	NA
UHGV-2131933_9	PHROG	phrog_1294	peptide methionine sulfoxide reductase	other
UHGV-2131933_10	PHROG	phrog_1021	NA	unknown function
UHGV-2131933_10	eggNOG-mapper	1256908.HMPREF0373_00470	NA	NA
UHGV-2131933_11	PHROG	phrog_885	major tail protein	tail
UHGV-2131933_11	eggNOG-mapper	1256908.HMPREF0373_00471	NA	NA
UHGV-2131933_11	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-2131933_12	PHROG	phrog_957	head protein	head and packaging
UHGV-2131933_12	eggNOG-mapper	1235800.C819_02229	NA	NA
UHGV-2131933_12	Structural annotation	PF12691	NA	NA
UHGV-2131933_13	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2131933_13	UniRef90	UniRef90_A0A416I9Q2	HK97 gp10 family phage protein	NA
UHGV-2131933_13	eggNOG-mapper	1256908.HMPREF0373_00473	NA	NA
UHGV-2131933_13	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-2131933_14	PHROG	phrog_1059	head-tail adaptor	connector
UHGV-2131933_14	UniRef90	UniRef90_A0A1C6E9J3	Bacteriophage head-tail adaptor	NA
UHGV-2131933_14	eggNOG-mapper	1256908.HMPREF0373_00474	NA	NA
UHGV-2131933_14	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-2131933_15	PHROG	phrog_1236	head protein	head and packaging
UHGV-2131933_15	eggNOG-mapper	1256908.HMPREF0373_00475	NA	NA
UHGV-2131933_15	Structural annotation	PF05135	NA	NA
UHGV-2131933_16	PHROG	phrog_544	major head protein	head and packaging
UHGV-2131933_16	UniRef90	UniRef90_UPI001C0F52E5	N4-gp56 family major capsid protein	NA
UHGV-2131933_16	eggNOG-mapper	411471.SUBVAR_06940	NA	NA
UHGV-2131933_16	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-2131933_16	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-2131933_17	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-2131933_17	UniRef90	UniRef90_UPI000E5C7AD7	phage scaffolding protein	NA
UHGV-2131933_17	eggNOG-mapper	1256908.HMPREF0373_00477	Phage minor structural protein GP20	NA
UHGV-2131933_17	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-2131933_17	Structural annotation	PF06810	NA	NA
UHGV-2131933_18	PHROG	phrog_872	NA	unknown function
UHGV-2131933_18	UniRef90	UniRef90_UPI0018C70BF8	NA	NA
UHGV-2131933_18	eggNOG-mapper	573413.Spirs_2170	NA	NA
UHGV-2131933_18	Pfam	PF11195	NA	DUF2829
UHGV-2131933_18	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-2131933_18	Structural annotation	PF11195	NA	NA
UHGV-2131933_20	PHROG	phrog_595	head maturation protease	head and packaging
UHGV-2131933_20	UniRef90	UniRef90_A0A8D9L2C5	NAD(+)--arginine ADP-ribosyltransferase EFV	NA
UHGV-2131933_20	eggNOG-mapper	1256908.HMPREF0373_00484	Phage Mu protein F like protein	NA
UHGV-2131933_20	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-2131933_20	COG	COG2369	NA	NA
UHGV-2131933_20	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-2131933_21	Structural annotation	PF07233, MF_00791, NF003967, COG2967	NA	NA
UHGV-2131933_22	Structural annotation	PF10651	NA	NA
UHGV-2131933_23	PHROG	phrog_64	portal protein	head and packaging
UHGV-2131933_23	UniRef90	UniRef90_A0A3A6J7Z8	Phage portal protein	NA
UHGV-2131933_23	eggNOG-mapper	1256908.HMPREF0373_00485	Phage portal protein, SPP1 Gp6-like	NA
UHGV-2131933_23	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2131933_23	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-2131933_24	PHROG	phrog_30251	terminase large subunit	head and packaging
UHGV-2131933_24	UniRef90	UniRef90_A0A3A6JKF1	Terminase	NA
UHGV-2131933_24	eggNOG-mapper	1408437.JNJN01000045_gene596	TIGRFAM Phage	NA
UHGV-2131933_24	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-2131933_24	COG	COG5410	NA	NA
UHGV-2131933_24	Structural annotation	PF17289, PF03237, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-2131933_25	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-2131933_25	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-2131933_25	UniRef90	UniRef90_A0A3A6J830	Terminase small subunit	NA
UHGV-2131933_25	eggNOG-mapper	1499683.CCFF01000014_gene3916	Terminase small subunit	NA
UHGV-2131933_25	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-2131933_25	COG	COG3728	Phage terminase, small subunit	NA
UHGV-2131933_25	Structural annotation	PF03592, COG3728	NA	NA
UHGV-2131933_27	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2131933_27	UniRef90	UniRef90_A0A174WV03	FliA/WhiG subfamily RNA polymerase sigma-28 subunit	NA
UHGV-2131933_27	eggNOG-mapper	97138.C820_00772	sigma factor activity	NA
UHGV-2131933_27	Pfam	PF07374	NA	DUF1492
UHGV-2131933_27	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-2131933_27	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-2131933_28	PHROG	phrog_17690	NA	unknown function
UHGV-2131933_28	UniRef90	UniRef90_A0A6L5XWF4	3-dehydroquinate synthase	NA
UHGV-2131933_28	eggNOG-mapper	33035.JPJF01000107_gene432	NA	NA
UHGV-2131933_32	PHROG	phrog_20593	NA	unknown function
UHGV-2131933_33	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-2131933_33	UniRef90	UniRef90_UPI001186151F	Lar family restriction alleviation protein	NA
UHGV-2131933_33	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-2131933_34	PHROG	phrog_10714	NA	unknown function
UHGV-2131933_34	eggNOG-mapper	397290.C810_05186	NA	NA
UHGV-2131933_35	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-2131933_36	PHROG	phrog_8684	NA	unknown function
UHGV-2131933_36	UniRef90	UniRef90_A0A822LMA9	YopX domain-containing protein	NA
UHGV-2131933_36	eggNOG-mapper	1497679.EP56_02820	YopX protein	NA
UHGV-2131933_36	Pfam	PF09643	YopX protein	YopX
UHGV-2131933_36	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-2131933_36	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-2131933_37	PHROG	phrog_874	NA	unknown function
UHGV-2131933_37	UniRef90	UniRef90_A0A4P6LRJ9	ASCH domain-containing protein	NA
UHGV-2131933_37	eggNOG-mapper	411468.CLOSCI_00298	NA	NA
UHGV-2131933_37	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-2131933_40	Structural annotation	PF06257, TIGR00739, COG4466	NA	NA
UHGV-2131933_41	PHROG	phrog_3205	NA	unknown function
UHGV-2131933_41	UniRef90	UniRef90_E6EWD7	EF-hand domain-containing protein	NA
UHGV-2131933_41	eggNOG-mapper	1158602.I590_02965	NA	NA
UHGV-2131933_42	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-2131933_42	PHROG	phrog_116	DNA methyltransferase	other
UHGV-2131933_42	UniRef90	UniRef90_A0A3A6J7Y8	DNA (cytosine-5-)-methyltransferase	NA
UHGV-2131933_42	eggNOG-mapper	1235800.C819_02255	C-5 cytosine-specific DNA methylase	NA
UHGV-2131933_42	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-2131933_42	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-2131933_42	COG	COG0270	DNA-cytosine methylase	NA
UHGV-2131933_42	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-2131933_43	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-2131933_43	UniRef90	UniRef90_A0A2H4JC51	Putative 3'-phosphoadenosine 5'-phosphosulfatesulfotransferase/FAD synthetase-related enzyme	NA
UHGV-2131933_43	eggNOG-mapper	411461.DORFOR_01142	NA	NA
UHGV-2131933_43	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-2131933_43	Structural annotation	PF01507, MF_00064, TIGR00434, COG0175	NA	NA
UHGV-2131933_44	PHROG	phrog_9804	NA	unknown function
UHGV-2131933_44	UniRef90	UniRef90_A0A3A6JKE0	Inhibitor_G39P domain-containing protein	NA
UHGV-2131933_44	eggNOG-mapper	626523.GCWU000342_01038	Loader and inhibitor of phage G40P	NA
UHGV-2131933_44	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-2131933_44	Structural annotation	PF11417	NA	NA
UHGV-2131933_45	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2131933_45	UniRef90	UniRef90_A0A822LMB7	NA	NA
UHGV-2131933_45	eggNOG-mapper	1256908.HMPREF0373_00661	NA	NA
UHGV-2131933_45	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-2131933_45	COG	COG3935	DNA replication protein DnaD	NA
UHGV-2131933_46	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2131933_46	UniRef90	UniRef90_A0A3R6WN18	NA	NA
UHGV-2131933_46	eggNOG-mapper	1236514.BAKL01000051_gene3708	NA	NA
UHGV-2131933_46	Pfam	PF06356	NA	DUF1064
UHGV-2131933_46	Structural annotation	PF06356	NA	NA
UHGV-2131933_47	PHROG	phrog_2760	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2131933_47	UniRef90	UniRef90_A0A3A6JBW3	Phage recombination protein Bet	NA
UHGV-2131933_47	eggNOG-mapper	397290.C810_01467	Phage recombination protein Bet	NA
UHGV-2131933_47	Pfam	PF03837	RecT family	RecT
UHGV-2131933_47	NCBIFam	TIGR01913.1	phage recombination protein Bet	NA
UHGV-2131933_47	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-2131933_47	Structural annotation	PF03837, TIGR01913, COG3723	NA	NA
UHGV-2131933_49	PHROG	phrog_674	NA	unknown function
UHGV-2131933_49	UniRef90	UniRef90_A0A417W7T9	NA	NA
UHGV-2131933_49	eggNOG-mapper	1095750.HMPREF9970_1676	NA	NA
UHGV-2131933_49	Pfam	PF07083	NA	DUF1351
UHGV-2131933_49	Structural annotation	PF07083	NA	NA
UHGV-2131933_50	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-2131933_50	UniRef90	UniRef90_A0A173W7Z3	Putative phage-type endonuclease	NA
UHGV-2131933_50	eggNOG-mapper	1095750.HMPREF9970_1677	YqaJ viral recombinase family	NA
UHGV-2131933_50	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-2131933_50	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-2131933_50	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-2131933_50	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-2131933_52	UniRef90	UniRef90_R5VU56	HTH_11 domain-containing protein	NA
UHGV-2131933_55	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-2131933_55	UniRef90	UniRef90_A0A3E2TSC3	XRE family transcriptional regulator	NA
UHGV-2131933_55	eggNOG-mapper	411469.EUBHAL_01993	Helix-turn-helix XRE-family like proteins	NA
UHGV-2131933_55	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-2131933_55	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2131933_55	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2131933_55	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-2131933_56	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-2131933_56	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-2131933_56	UniRef90	UniRef90_A0A417PKX0	XRE family transcriptional regulator	NA
UHGV-2131933_56	eggNOG-mapper	411490.ANACAC_00815	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-2131933_56	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-2131933_56	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-2131933_56	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-2131933_56	Structural annotation	PF01381, PF00717, MF_00015, NF041951, COG1396	NA	NA
UHGV-2131933_57	Structural annotation	PF03965, NF033789, COG3682	NA	NA
UHGV-2131933_58	KOfam	K14059	int; integrase	NA
UHGV-2131933_58	PHROG	phrog_1	integrase	integration and excision
UHGV-2131933_58	UniRef90	UniRef90_A0A3A6JBV3	Site-specific integrase	NA
UHGV-2131933_58	eggNOG-mapper	1280698.AUJS01000007_gene999	Phage integrase family	NA
UHGV-2131933_58	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2131933_58	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2131933_58	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA