UHGV-2132131

Genome information

Genome length 36,950 bps

CDS count 58

Completeness 99.66% (high-quality)

geNomad score 0.9736

Prediction confidence Confident

Genome information
Genome ID	UHGV-2132131
vOTU ID	vOTU-060107
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029634\|Ga0242800_100295\|provirus_67_43221
BioSample	SAMN05545047
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.66% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9736
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	52.64
Jumbo phage	No

Genome content
Genome length	36,950 bps
GC content	48.73%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	92.61%
Average CDS length	595.35 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2132131_1	PHROG	phrog_1762	NA	unknown function
UHGV-2132131_1	UniRef90	UniRef90_A0A3A6JY38	NA	NA
UHGV-2132131_1	eggNOG-mapper	1391646.AVSU01000063_gene3373	NA	NA
UHGV-2132131_1	Pfam	PF11185	NA	DUF2971
UHGV-2132131_1	COG	COG0457	Tetratricopeptide (TPR) repeat	NA
UHGV-2132131_3	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-2132131_3	UniRef90	UniRef90_A0A3E2U545	XRE family transcriptional regulator	NA
UHGV-2132131_3	eggNOG-mapper	411461.DORFOR_01128	Cro/C1-type HTH DNA-binding domain	NA
UHGV-2132131_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2132131_3	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-2132131_4	KOfam	K17733	cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-]	NA
UHGV-2132131_4	PHROG	phrog_2649	endolysin	lysis
UHGV-2132131_4	UniRef90	UniRef90_A0A1I0GLR6	Peptidoglycan L-alanyl-D-glutamate endopeptidase CwlK	NA
UHGV-2132131_4	eggNOG-mapper	742733.HMPREF9469_01368	D-alanyl-D-alanine carboxypeptidase	NA
UHGV-2132131_4	AcrCatalog	cluster_9940	NA	NA
UHGV-2132131_4	Pfam	PF13539	D-alanyl-D-alanine carboxypeptidase	Peptidase_M15_4
UHGV-2132131_4	COG	COG1876	LD-carboxypeptidase LdcB, LAS superfamily	NA
UHGV-2132131_4	Structural annotation	PF02557, PF19127, MF_01924, NF007557, TIGR04035, COG2173	NA	NA
UHGV-2132131_5	PHROG	phrog_199	holin	lysis
UHGV-2132131_5	UniRef90	UniRef90_A0A2T3F3A5	Holin	NA
UHGV-2132131_5	eggNOG-mapper	742740.HMPREF9474_04290	Bacteriophage holin family	NA
UHGV-2132131_5	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-2132131_5	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-2132131_5	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-2132131_5	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-2132131_6	UniRef90	UniRef90_A0A2T3F842	XkdX family protein	NA
UHGV-2132131_6	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-2132131_6	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-2132131_7	eggNOG-mapper	742733.HMPREF9469_01800	NA	NA
UHGV-2132131_9	UniRef90	UniRef90_A0A2T3EZJ9	BppU_N domain-containing protein (Fragment)	NA
UHGV-2132131_9	eggNOG-mapper	610130.Closa_0759	NA	NA
UHGV-2132131_11	PHROG	phrog_7854	endolysin	lysis
UHGV-2132131_11	UniRef90	UniRef90_A0A2S6HQG5	Putative cell wall binding repeat protein	NA
UHGV-2132131_11	eggNOG-mapper	1304866.K413DRAFT_4757	cell wall binding	NA
UHGV-2132131_11	Pfam	PF19085	Choline-binding repeat	Choline_bind_2
UHGV-2132131_12	PHROG	phrog_3558	tail protein	tail
UHGV-2132131_12	UniRef90	UniRef90_A0A2T3EZH1	Prophage_tail domain-containing protein	NA
UHGV-2132131_12	eggNOG-mapper	610130.Closa_0754	NA	NA
UHGV-2132131_12	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-2132131_12	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-2132131_12	COG	COG4926	Phage-related protein	NA
UHGV-2132131_12	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-2132131_13	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-2132131_13	UniRef90	UniRef90_A0A2T3EZG0	MtfA protein	NA
UHGV-2132131_13	eggNOG-mapper	411490.ANACAC_00709	phage tail	NA
UHGV-2132131_13	COG	COG4722	Phage-related protein YomH	NA
UHGV-2132131_13	Structural annotation	PF05709, PF02408, TIGR01633, COG4722	NA	NA
UHGV-2132131_14	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-2132131_14	UniRef90	UniRef90_A0A2T3EZI8	PhageMin_Tail domain-containing protein	NA
UHGV-2132131_14	eggNOG-mapper	573061.Clocel_3533	tail tape measure protein	NA
UHGV-2132131_14	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-2132131_14	COG	COG5280	Phage-related minor tail protein	NA
UHGV-2132131_14	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-2132131_15	PHROG	phrog_706	NA	unknown function
UHGV-2132131_15	UniRef90	UniRef90_UPI001D038340	bacteriophage Gp15 family protein	NA
UHGV-2132131_15	eggNOG-mapper	935836.JAEL01000086_gene44	Bacteriophage Gp15 protein	NA
UHGV-2132131_15	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-2132131_15	Structural annotation	PF06854	NA	NA
UHGV-2132131_16	Structural annotation	PF10666	NA	NA
UHGV-2132131_17	PHROG	phrog_820	major tail protein	tail
UHGV-2132131_17	UniRef90	UniRef90_A0A3R6YSE8	Capsid protein	NA
UHGV-2132131_17	eggNOG-mapper	665959.HMPREF1013_00194	domain, Protein	NA
UHGV-2132131_17	COG	COG5492	NA	NA
UHGV-2132131_17	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-2132131_18	PHROG	phrog_913	minor head protein	head and packaging
UHGV-2132131_18	UniRef90	UniRef90_UPI001D058B7D	minor capsid protein	NA
UHGV-2132131_18	Structural annotation	PF12691	NA	NA
UHGV-2132131_19	PHROG	phrog_556	minor head protein	head and packaging
UHGV-2132131_19	UniRef90	UniRef90_UPI001D057CDA	minor capsid protein	NA
UHGV-2132131_19	eggNOG-mapper	428125.CLOLEP_00180	Minor capsid protein	NA
UHGV-2132131_19	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-2132131_19	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-2132131_20	PHROG	phrog_793	head-tail adaptor	connector
UHGV-2132131_20	UniRef90	UniRef90_UPI001DCE9966	minor capsid protein	NA
UHGV-2132131_20	eggNOG-mapper	1231057.AMGD01000018_gene3616	Minor capsid protein	NA
UHGV-2132131_20	Pfam	PF10665	Minor capsid protein	Minor_capsid_1
UHGV-2132131_20	COG	COG5652	VanZ-like family protein (function unknown)	NA
UHGV-2132131_20	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-2132131_21	PHROG	phrog_541	head-tail adaptor	connector
UHGV-2132131_21	UniRef90	UniRef90_R5RS10	Protein gp8	NA
UHGV-2132131_21	eggNOG-mapper	1231057.AMGD01000018_gene3617	NA	NA
UHGV-2132131_22	PHROG	phrog_212	major head protein	head and packaging
UHGV-2132131_22	UniRef90	UniRef90_A0A2T3EZI1	Phage capsid protein	NA
UHGV-2132131_22	eggNOG-mapper	1151292.QEW_2433	NA	NA
UHGV-2132131_22	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-2132131_23	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-2132131_23	eggNOG-mapper	1280692.AUJL01000027_gene2161	NA	NA
UHGV-2132131_25	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2132131_25	UniRef90	UniRef90_UPI001D2C4106	phage minor capsid protein	NA
UHGV-2132131_25	eggNOG-mapper	428125.CLOLEP_01802	NA	NA
UHGV-2132131_25	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2132131_25	COG	COG2369	NA	NA
UHGV-2132131_25	Structural annotation	PF06152	NA	NA
UHGV-2132131_26	PHROG	phrog_533	portal protein	head and packaging
UHGV-2132131_26	UniRef90	UniRef90_UPI001D71E5F8	phage portal protein	NA
UHGV-2132131_26	eggNOG-mapper	1120998.AUFC01000030_gene2232	NA	NA
UHGV-2132131_26	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2132131_26	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-2132131_27	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2132131_27	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-2132131_27	UniRef90	UniRef90_A0A2T3EZG6	PBSX family phage terminase large subunit	NA
UHGV-2132131_27	eggNOG-mapper	592031.GCWU000322_00074	Phage terminase large subunit	NA
UHGV-2132131_27	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-2132131_27	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2132131_27	COG	COG1783	Phage terminase large subunit	NA
UHGV-2132131_27	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-2132131_28	PHROG	phrog_2412	NA	unknown function
UHGV-2132131_28	UniRef90	UniRef90_A0A4V1EFZ3	NA	NA
UHGV-2132131_28	eggNOG-mapper	742723.HMPREF9477_00912	NA	NA
UHGV-2132131_29	PHROG	phrog_30856	NA	unknown function
UHGV-2132131_29	eggNOG-mapper	37659.JNLN01000001_gene2378	NA	NA
UHGV-2132131_30	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2132131_30	UniRef90	UniRef90_A0A174EB71	FliA/WhiG subfamily RNA polymerase sigma-28 subunit	NA
UHGV-2132131_30	eggNOG-mapper	1123075.AUDP01000020_gene1515	sigma factor activity	NA
UHGV-2132131_30	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-2132131_30	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-2132131_35	PHROG	phrog_757	DNA methyltransferase	other
UHGV-2132131_35	UniRef90	UniRef90_UPI00189D46F4	DNA cytosine methyltransferase	NA
UHGV-2132131_35	eggNOG-mapper	1291050.JAGE01000001_gene2906	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-2132131_35	COG	COG0270	DNA-cytosine methylase	NA
UHGV-2132131_35	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-2132131_36	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-2132131_36	UniRef90	UniRef90_C0CTA2	Phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-2132131_36	eggNOG-mapper	33035.JPJF01000123_gene2435	NA	NA
UHGV-2132131_36	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-2132131_36	Structural annotation	PF01507, MF_00064, TIGR00434, COG0175	NA	NA
UHGV-2132131_37	PHROG	phrog_11941	NA	unknown function
UHGV-2132131_39	KOfam	K18959	uvsW; ATP-dependent DNA helicase UvsW [EC:5.6.2.4]	NA
UHGV-2132131_39	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2132131_39	UniRef90	UniRef90_UPI00164D6191	DEAD/DEAH box helicase	NA
UHGV-2132131_39	eggNOG-mapper	1232453.BAIF02000010_gene3343	Type III restriction protein res subunit	NA
UHGV-2132131_39	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-2132131_39	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-2132131_39	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-2132131_39	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-2132131_39	Structural annotation	PF04851, PF16203, MF_01489, TIGR00603, COG1061	NA	NA
UHGV-2132131_40	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2132131_40	UniRef90	UniRef90_UPI001D05EFAF	Holliday junction resolvase RecU	NA
UHGV-2132131_40	eggNOG-mapper	1232453.BAIF02000010_gene3342	Recombination protein U	NA
UHGV-2132131_40	Structural annotation	PF03838, MF_00130, NF002584, COG1591	NA	NA
UHGV-2132131_41	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-2132131_41	UniRef90	UniRef90_A0A174R7L7	Superfamily II helicase	NA
UHGV-2132131_41	eggNOG-mapper	1232453.BAIF02000010_gene3340	NA	NA
UHGV-2132131_41	Pfam	PF06048	NA	DUF927
UHGV-2132131_41	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-2132131_41	COG	COG5519	NA	NA
UHGV-2132131_41	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-2132131_42	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-2132131_42	PHROG	phrog_11992	NA	unknown function
UHGV-2132131_42	UniRef90	UniRef90_A0A1I0KAC9	CHC2 zinc finger	NA
UHGV-2132131_42	eggNOG-mapper	1232453.BAIF02000010_gene3339	DNA primase activity	NA
UHGV-2132131_42	PADLOC	drt-UG29	DRT	DRT
UHGV-2132131_42	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-2132131_42	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-2132131_42	Structural annotation	PF01807	NA	NA
UHGV-2132131_43	PHROG	phrog_18107	NA	unknown function
UHGV-2132131_43	eggNOG-mapper	1232453.BAIF02000010_gene3338	NA	NA
UHGV-2132131_43	Structural annotation	PF05037	NA	NA
UHGV-2132131_44	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2132131_44	UniRef90	UniRef90_UPI001D05DFA5	ATP-binding protein	NA
UHGV-2132131_44	eggNOG-mapper	1232453.BAIF02000010_gene3337	AAA domain	NA
UHGV-2132131_44	Pfam	PF13479	AAA domain	AAA_24
UHGV-2132131_44	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-2132131_45	eggNOG-mapper	1449050.JNLE01000005_gene3947	NA	NA
UHGV-2132131_47	UniRef90	UniRef90_UPI0015937D0E	phosphatase	NA
UHGV-2132131_47	Structural annotation	PF11302, MF_00085, NF003076, COG0231	NA	NA
UHGV-2132131_49	PHROG	phrog_34638	NA	unknown function
UHGV-2132131_49	Structural annotation	COG1965	NA	NA
UHGV-2132131_53	UniRef90	UniRef90_UPI0006C79179	helix-turn-helix domain-containing protein	NA
UHGV-2132131_53	eggNOG-mapper	478749.BRYFOR_07577	Helix-turn-helix domain	NA
UHGV-2132131_53	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-2132131_53	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-2132131_54	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2132131_54	UniRef90	UniRef90_A0A1Y4RW26	Transcriptional regulator	NA
UHGV-2132131_54	eggNOG-mapper	1304866.K413DRAFT_0833	Cro/C1-type HTH DNA-binding domain	NA
UHGV-2132131_54	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2132131_54	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-2132131_55	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-2132131_55	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2132131_55	UniRef90	UniRef90_UPI001C3E45C8	helix-turn-helix transcriptional regulator	NA
UHGV-2132131_55	eggNOG-mapper	411459.RUMOBE_00961	Bacteriophage CI repressor helix-turn-helix domain	NA
UHGV-2132131_55	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-2132131_55	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-2132131_55	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-2132131_56	PHROG	phrog_87	metallo-protease	other
UHGV-2132131_56	UniRef90	UniRef90_UPI001F2CA0C0	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-2132131_56	eggNOG-mapper	318464.IO99_00420	IrrE N-terminal-like domain	NA
UHGV-2132131_56	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-2132131_56	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-2132131_56	Structural annotation	PF06114, COG2856	NA	NA
UHGV-2132131_58	KOfam	K14059	int; integrase	NA
UHGV-2132131_58	PHROG	phrog_1	integrase	integration and excision
UHGV-2132131_58	UniRef90	UniRef90_A0A3E2V558	Site-specific integrase	NA
UHGV-2132131_58	eggNOG-mapper	411902.CLOBOL_02558	Belongs to the 'phage' integrase family	NA
UHGV-2132131_58	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-2132131_58	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2132131_58	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2132131_58	Structural annotation	PF00589, PF14659, PF14657, MF_01808, TIGR02224, COG4974	NA	NA