UHGV-2132380

Genome information

vOTU vOTU-020816

Genome length 59,059 bps

CDS count 58

Completeness 57.50% (medium-quality)

geNomad score 0.9816

Prediction confidence Confident

Genome information
Genome ID	UHGV-2132380
vOTU ID	vOTU-020816
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029607\|Ga0244907_100257\|provirus_15483_77427
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	57.50% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	13
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9816
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	48.26
Jumbo phage	No

Genome content
Genome length	59,059 bps
GC content	41.75%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	94.76%
Average CDS length	968.33 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2132380_1	PHROG	phrog_1086	NA	unknown function
UHGV-2132380_1	UniRef90	UniRef90_A0A5C6JE40	NA	NA
UHGV-2132380_1	eggNOG-mapper	742726.HMPREF9448_02001	WYL_2, Sm-like SH3 beta-barrel fold	NA
UHGV-2132380_1	Pfam	PF10902	WYL_2, Sm-like SH3 beta-barrel fold	WYL_2
UHGV-2132380_1	Structural annotation	PF10902	NA	NA
UHGV-2132380_2	PHROG	phrog_129	transcriptional regulator	transcription regulation
UHGV-2132380_2	UniRef90	UniRef90_UPI00195A6FD7	phage antirepressor KilAC domain-containing protein	NA
UHGV-2132380_2	eggNOG-mapper	1268240.ATFI01000020_gene144	KilA-N domain	NA
UHGV-2132380_2	Pfam	PF04383	KilA-N domain	KilA-N
UHGV-2132380_2	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-2132380_2	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-2132380_2	Structural annotation	PF03374, PF04383, COG3645, COG3943	NA	NA
UHGV-2132380_4	PHROG	phrog_940	nuclease	DNA, RNA and nucleotide metabolism
UHGV-2132380_4	UniRef90	UniRef90_G5SML1	ParB domain-containing protein	NA
UHGV-2132380_4	eggNOG-mapper	762968.HMPREF9441_00586	NA	NA
UHGV-2132380_4	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-2132380_4	Pfam	PF14386	NA	DUF4417
UHGV-2132380_4	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-2132380_4	Structural annotation	PF14386, PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-2132380_6	PHROG	phrog_36422	NA	unknown function
UHGV-2132380_6	UniRef90	UniRef90_F3QSL1	Conserved domain protein	NA
UHGV-2132380_6	eggNOG-mapper	762982.HMPREF9442_01171	NA	NA
UHGV-2132380_6	Structural annotation	PF18451	NA	NA
UHGV-2132380_7	PHROG	phrog_15125	NA	unknown function
UHGV-2132380_7	UniRef90	UniRef90_F3QSL2	Conserved domain protein	NA
UHGV-2132380_7	eggNOG-mapper	762982.HMPREF9442_01172	NA	NA
UHGV-2132380_8	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2132380_8	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-2132380_8	UniRef90	UniRef90_A0A6N3EM42	Phage terminase large subunit	NA
UHGV-2132380_8	eggNOG-mapper	357276.EL88_11340	Phage terminase, large subunit, PBSX family	NA
UHGV-2132380_8	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-2132380_8	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-2132380_8	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2132380_8	COG	COG1783	Phage terminase large subunit	NA
UHGV-2132380_8	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-2132380_9	PHROG	phrog_64	portal protein	head and packaging
UHGV-2132380_9	UniRef90	UniRef90_G5SMK5	Phage portal protein, SPP1 family	NA
UHGV-2132380_9	eggNOG-mapper	762968.HMPREF9441_00580	Phage portal protein, SPP1 Gp6-like	NA
UHGV-2132380_9	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2132380_9	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-2132380_10	PHROG	phrog_5824	NA	unknown function
UHGV-2132380_10	eggNOG-mapper	762968.HMPREF9441_00579	NA	NA
UHGV-2132380_10	AcrCatalog	cluster_223919	NA	NA
UHGV-2132380_11	PHROG	phrog_9196	NA	unknown function
UHGV-2132380_11	UniRef90	UniRef90_UPI00195783BD	head fiber protein	NA
UHGV-2132380_11	eggNOG-mapper	762968.HMPREF9441_00578	Head fiber protein	NA
UHGV-2132380_11	Pfam	PF11133	Head fiber protein	Phage_head_fibr
UHGV-2132380_11	Structural annotation	PF21430, NF009633	NA	NA
UHGV-2132380_12	PHROG	phrog_29	major head protein	head and packaging
UHGV-2132380_12	UniRef90	UniRef90_UPI0008D9EBC9	major capsid protein	NA
UHGV-2132380_12	eggNOG-mapper	762968.HMPREF9441_00577	NA	NA
UHGV-2132380_12	Structural annotation	PF03864, MF_04133	NA	NA
UHGV-2132380_13	PHROG	phrog_7935	NA	unknown function
UHGV-2132380_13	eggNOG-mapper	762968.HMPREF9441_00576	NA	NA
UHGV-2132380_13	Pfam	PF20449	NA	DUF6706
UHGV-2132380_13	Structural annotation	PF20449	NA	NA
UHGV-2132380_14	PHROG	phrog_16482	NA	unknown function
UHGV-2132380_14	eggNOG-mapper	762968.HMPREF9441_00575	NA	NA
UHGV-2132380_14	Structural annotation	PF20536, TIGR01563, COG5614	NA	NA
UHGV-2132380_15	PHROG	phrog_5597	NA	unknown function
UHGV-2132380_15	eggNOG-mapper	1347393.HG726021_gene475	NA	NA
UHGV-2132380_15	Structural annotation	PF12691, TIGR01633	NA	NA
UHGV-2132380_16	PHROG	phrog_14600	NA	unknown function
UHGV-2132380_16	UniRef90	UniRef90_R6ZP18	Conserved domain protein	NA
UHGV-2132380_16	eggNOG-mapper	762968.HMPREF9441_00573	NA	NA
UHGV-2132380_16	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-2132380_17	PHROG	phrog_13669	NA	unknown function
UHGV-2132380_17	eggNOG-mapper	762968.HMPREF9441_00571	NA	NA
UHGV-2132380_17	Structural annotation	PF20336	NA	NA
UHGV-2132380_18	PHROG	phrog_14740	NA	unknown function
UHGV-2132380_18	eggNOG-mapper	762968.HMPREF9441_00570	NA	NA
UHGV-2132380_19	PHROG	phrog_5377	NA	unknown function
UHGV-2132380_19	eggNOG-mapper	762968.HMPREF9441_00569	NA	NA
UHGV-2132380_20	KOfam	K20283	GOLGA4; golgin subfamily A member 4	NA
UHGV-2132380_20	PHROG	phrog_14295	NA	unknown function
UHGV-2132380_20	UniRef90	UniRef90_F3QSM9	Conserved domain protein	NA
UHGV-2132380_20	eggNOG-mapper	762968.HMPREF9441_00568	NA	NA
UHGV-2132380_20	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-2132380_21	PHROG	phrog_6305	tail protein	tail
UHGV-2132380_21	UniRef90	UniRef90_F3QSN0	Conserved domain protein	NA
UHGV-2132380_21	eggNOG-mapper	762968.HMPREF9441_00567	NA	NA
UHGV-2132380_21	Structural annotation	PF11514, TIGR01633, COG4722	NA	NA
UHGV-2132380_22	KOfam	K06237	COL4A; collagen type IV alpha	NA
UHGV-2132380_22	PHROG	phrog_38044	NA	unknown function
UHGV-2132380_22	UniRef90	UniRef90_A0A6N3ESA8	Chromosome partition protein Smc	NA
UHGV-2132380_22	eggNOG-mapper	762968.HMPREF9441_00566	cellulase activity	NA
UHGV-2132380_22	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-2132380_22	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-2132380_23	PHROG	phrog_29137	NA	unknown function
UHGV-2132380_23	UniRef90	UniRef90_F3QSN2	Conserved domain protein	NA
UHGV-2132380_24	PHROG	phrog_20732	NA	unknown function
UHGV-2132380_24	UniRef90	UniRef90_UPI0019142871	phage holin family protein	NA
UHGV-2132380_24	eggNOG-mapper	762968.HMPREF9441_00564	NA	NA
UHGV-2132380_24	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-2132380_25	PHROG	phrog_28004	NA	unknown function
UHGV-2132380_25	UniRef90	UniRef90_F3QSN4	Conserved domain protein	NA
UHGV-2132380_25	eggNOG-mapper	762968.HMPREF9441_00563	NA	NA
UHGV-2132380_25	Structural annotation	PF01105, NF038393	NA	NA
UHGV-2132380_26	PHROG	phrog_36764	NA	unknown function
UHGV-2132380_26	UniRef90	UniRef90_F3QSN5	Conserved domain protein	NA
UHGV-2132380_30	eggNOG-mapper	762211.BSTEL_0610	NA	NA
UHGV-2132380_31	UniRef90	UniRef90_A0A7M1RYM4	Peptidase S74 domain-containing protein	NA
UHGV-2132380_33	UniRef90	UniRef90_A0A8F0WBS0	Phage lysis regulatory protein	NA
UHGV-2132380_33	Structural annotation	PF20186	NA	NA
UHGV-2132380_34	UniRef90	UniRef90_A0A7M1RZY7	Lysis regulatory protein/holin	NA
UHGV-2132380_35	PHROG	phrog_1501	NA	unknown function
UHGV-2132380_35	UniRef90	UniRef90_A0A7M1RZZ0	L,D-carboxypeptidase/transpeptidase	NA
UHGV-2132380_35	eggNOG-mapper	679935.Alfi_0537	NA	NA
UHGV-2132380_35	Pfam	PF18925	NA	DUF5675
UHGV-2132380_35	Structural annotation	PF18925	NA	NA
UHGV-2132380_37	PHROG	phrog_5302	tail protein	tail
UHGV-2132380_37	eggNOG-mapper	470145.BACCOP_01125	NA	NA
UHGV-2132380_39	UniRef90	UniRef90_A0A8F1B604	Excisionase, terminase small subunit	NA
UHGV-2132380_39	Structural annotation	PF05930, NF033787, COG3311	NA	NA
UHGV-2132380_40	PHROG	phrog_1365	NA	unknown function
UHGV-2132380_40	eggNOG-mapper	1392488.JHZY01000004_gene1737	NA	NA
UHGV-2132380_44	PHROG	phrog_11589	major head protein	head and packaging
UHGV-2132380_44	UniRef90	UniRef90_A0A8F0WBK4	Major capsid protein	NA
UHGV-2132380_45	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2132380_45	UniRef90	UniRef90_A0A1V5RXA7	NUMOD4 motif protein	NA
UHGV-2132380_45	eggNOG-mapper	749413.E5DV63_9VIRU	HNH endonuclease	NA
UHGV-2132380_45	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-2132380_45	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-2132380_45	Structural annotation	PF07463, PF02796, PF13392, MF_00620, NF003055	NA	NA
UHGV-2132380_46	UniRef90	UniRef90_A0A7M1RZ56	Major capsid protein	NA
UHGV-2132380_47	UniRef90	UniRef90_A0A7M1RZZ8	Double-stranded DNA binding domain protein	NA
UHGV-2132380_48	UniRef90	UniRef90_S0A421	Structural protein	NA
UHGV-2132380_48	Structural annotation	PF20387	NA	NA
UHGV-2132380_49	UniRef90	UniRef90_S0A421	Structural protein	NA
UHGV-2132380_49	Structural annotation	PF20387	NA	NA
UHGV-2132380_51	UniRef90	UniRef90_A0A8F0WBZ6	Tetratricopeptide repeat protein	NA
UHGV-2132380_51	Structural annotation	PF19271, NF011813	NA	NA
UHGV-2132380_53	PHROG	phrog_9863	virion structural protein	head and packaging
UHGV-2132380_53	Structural annotation	PF20387	NA	NA
UHGV-2132380_54	PHROG	phrog_12177	NA	unknown function
UHGV-2132380_54	UniRef90	UniRef90_A0A7M1RYP6	HU/IHF-like protein	NA
UHGV-2132380_54	Structural annotation	PF00216, MF_00380, TIGR00987, COG0776	NA	NA
UHGV-2132380_55	UniRef90	UniRef90_A0A8F1B5V2	Tail tubular protein	NA
UHGV-2132380_55	Structural annotation	PF20387	NA	NA
UHGV-2132380_56	PHROG	phrog_28748	virion structural protein	head and packaging
UHGV-2132380_56	UniRef90	UniRef90_A0A8F0WD16	Phage stabilization protein	NA
UHGV-2132380_56	Structural annotation	PF11134	NA	NA
UHGV-2132380_57	PHROG	phrog_9570	tail length tape measure protein	tail
UHGV-2132380_57	UniRef90	UniRef90_A0A8F1B536	Phage_lysozyme2 domain-containing protein	NA
UHGV-2132380_57	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2