UHGV-2132509

Genome information

Genome length 40,108 bps

CDS count 70

Completeness 99.90% (high-quality)

geNomad score 0.9722

Prediction confidence Confident

Genome information
Genome ID	UHGV-2132509
vOTU ID	vOTU-065009
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029711\|Ga0245193_100114\|provirus_78864_118971
BioSample	SAMEA3449245
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9722
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	21.54
Jumbo phage	No

Genome content
Genome length	40,108 bps
GC content	27.42%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	70
CDS density	88.68%
Average CDS length	510.60 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2132509_2	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2132509_2	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2132509_2	UniRef90	UniRef90_R7FEZ4	Toxin-antitoxin system	NA
UHGV-2132509_2	eggNOG-mapper	1120998.AUFC01000009_gene2087	Helix-turn-helix XRE-family like proteins	NA
UHGV-2132509_2	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-2132509_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2132509_2	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2132509_2	Structural annotation	PF01381, MF_00535, NF007257, COG1396	NA	NA
UHGV-2132509_4	Pfam	PF09388	Spo0E like sporulation regulatory protein	SpoOE-like
UHGV-2132509_4	Structural annotation	PF09388	NA	NA
UHGV-2132509_7	PHROG	phrog_18955	NA	unknown function
UHGV-2132509_7	UniRef90	UniRef90_R7FGU9	Peptidoglycan-binding domain 1 protein	NA
UHGV-2132509_7	eggNOG-mapper	717606.PaecuDRAFT_1762	Papain-like cysteine protease AvrRpt2	NA
UHGV-2132509_7	Pfam	PF13529	Peptidase_C39 like family	Peptidase_C39_2
UHGV-2132509_7	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-2132509_7	COG	COG0768	Cell division protein FtsI, peptidoglycan transpeptidase (Penicillin-binding protein 2)	NA
UHGV-2132509_7	Structural annotation	PF03412, PF08239, PF18341, NF040678, NF033920, COG4991, COG4990	NA	NA
UHGV-2132509_8	PHROG	phrog_937	hemolysin	other
UHGV-2132509_8	eggNOG-mapper	1235793.C809_03303	NA	NA
UHGV-2132509_9	PHROG	phrog_2310	NA	unknown function
UHGV-2132509_9	eggNOG-mapper	632245.CLP_2682	NA	NA
UHGV-2132509_10	eggNOG-mapper	536233.CLO_1580	NA	NA
UHGV-2132509_10	Structural annotation	TIGR03711	NA	NA
UHGV-2132509_12	PHROG	phrog_5555	tail protein	tail
UHGV-2132509_12	UniRef90	UniRef90_R6HDY9	Staphylococcus haemolyticus JCSC1435 DNA complete genome	NA
UHGV-2132509_12	eggNOG-mapper	562743.JH976440_gene347	Phage minor structural protein	NA
UHGV-2132509_12	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-2132509_12	COG	COG0497	DNA repair ATPase RecN	NA
UHGV-2132509_13	PHROG	phrog_5668	tail fiber protein	tail
UHGV-2132509_13	UniRef90	UniRef90_A0A7V8A6H9	PblB	NA
UHGV-2132509_13	eggNOG-mapper	469596.HMPREF9488_01330	NA	NA
UHGV-2132509_13	Structural annotation	PF16466, TIGR03361, COG3500	NA	NA
UHGV-2132509_14	PHROG	phrog_1194	NA	unknown function
UHGV-2132509_14	Structural annotation	PF20458, TIGR01633, COG4718	NA	NA
UHGV-2132509_15	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-2132509_15	eggNOG-mapper	1391647.AVSV01000003_gene1817	phage tail tape measure protein	NA
UHGV-2132509_15	COG	COG1511	NA	NA
UHGV-2132509_15	Structural annotation	PF09486, TIGR02559	NA	NA
UHGV-2132509_16	PHROG	phrog_706	NA	unknown function
UHGV-2132509_16	UniRef90	UniRef90_UPI00067E77F7	Gp15 family bacteriophage protein	NA
UHGV-2132509_16	eggNOG-mapper	469596.HMPREF9488_01327	Bacteriophage Gp15 protein	NA
UHGV-2132509_16	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-2132509_16	Structural annotation	PF06854	NA	NA
UHGV-2132509_18	PHROG	phrog_6148	beta-lactamase-inhibitor protein BLIP	moron, auxiliary metabolic gene and host takeover
UHGV-2132509_18	UniRef90	UniRef90_A0A415L489	NA	NA
UHGV-2132509_18	eggNOG-mapper	1449050.JNLE01000005_gene4075	NA	NA
UHGV-2132509_18	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-2132509_18	Pfam	PF12978	NA	DUF3862
UHGV-2132509_18	Structural annotation	PF12978, PF10571, MF_00925, NF008423, COG2913	NA	NA
UHGV-2132509_19	PHROG	phrog_3099	NA	unknown function
UHGV-2132509_19	eggNOG-mapper	645991.Sgly_0346	NA	NA
UHGV-2132509_19	Structural annotation	PF09393, TIGR02126, COG5437	NA	NA
UHGV-2132509_20	PHROG	phrog_3266	tail completion	connector
UHGV-2132509_20	UniRef90	UniRef90_UPI000DCF807F	chloramphenicol resistance protein	NA
UHGV-2132509_20	eggNOG-mapper	573061.Clocel_3537	NA	NA
UHGV-2132509_20	Structural annotation	PF12691	NA	NA
UHGV-2132509_21	PHROG	phrog_556	minor head protein	head and packaging
UHGV-2132509_21	UniRef90	UniRef90_A0A174E6U4	Minor capsid	NA
UHGV-2132509_21	eggNOG-mapper	1304866.K413DRAFT_3041	NA	NA
UHGV-2132509_21	Structural annotation	PF11114	NA	NA
UHGV-2132509_22	PHROG	phrog_3366	NA	unknown function
UHGV-2132509_22	Pfam	PF20536	NA	DUF6751
UHGV-2132509_22	Structural annotation	PF20536, COG5614	NA	NA
UHGV-2132509_23	PHROG	phrog_541	head-tail adaptor	connector
UHGV-2132509_23	eggNOG-mapper	411470.RUMGNA_02220	NA	NA
UHGV-2132509_24	PHROG	phrog_544	major head protein	head and packaging
UHGV-2132509_24	UniRef90	UniRef90_UPI000E5CD0B7	N4-gp56 family major capsid protein	NA
UHGV-2132509_24	eggNOG-mapper	411471.SUBVAR_06940	NA	NA
UHGV-2132509_24	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-2132509_24	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-2132509_25	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-2132509_25	UniRef90	UniRef90_R6XV28	Phage minor structural protein GP20	NA
UHGV-2132509_25	eggNOG-mapper	608534.GCWU000341_02294	Phage minor structural protein GP20	NA
UHGV-2132509_25	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-2132509_25	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-2132509_26	Structural annotation	PF09871, TIGR00739, COG1862	NA	NA
UHGV-2132509_28	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2132509_28	UniRef90	UniRef90_R6YG84	CdiA_C domain-containing protein	NA
UHGV-2132509_28	eggNOG-mapper	1395513.P343_12675	Phage minor capsid protein 2	NA
UHGV-2132509_28	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2132509_28	COG	COG2369	NA	NA
UHGV-2132509_28	Structural annotation	PF06152, PF21814	NA	NA
UHGV-2132509_29	PHROG	phrog_533	portal protein	head and packaging
UHGV-2132509_29	UniRef90	UniRef90_R6Y8H1	Minor capsid protein	NA
UHGV-2132509_29	eggNOG-mapper	545697.HMPREF0216_02845	NA	NA
UHGV-2132509_29	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2132509_29	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-2132509_30	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2132509_30	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-2132509_30	UniRef90	UniRef90_R6DVT6	Phage terminase large subunit PBSX family	NA
UHGV-2132509_30	eggNOG-mapper	1120998.AUFC01000030_gene2231	Phage terminase, large subunit, PBSX family	NA
UHGV-2132509_30	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-2132509_30	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2132509_30	COG	COG1783	Phage terminase large subunit	NA
UHGV-2132509_30	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-2132509_32	PHROG	phrog_1233	NA	unknown function
UHGV-2132509_32	UniRef90	UniRef90_R7IWF8	Peptidase_M78 domain-containing protein	NA
UHGV-2132509_32	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-2132509_32	Structural annotation	PF13058	NA	NA
UHGV-2132509_37	PHROG	phrog_918	NA	unknown function
UHGV-2132509_37	UniRef90	UniRef90_UPI000F4ECE86	NA	NA
UHGV-2132509_37	eggNOG-mapper	1504823.CCMM01000008_gene1021	NA	NA
UHGV-2132509_37	Pfam	PF19791	NA	DUF6275
UHGV-2132509_37	Structural annotation	PF19791	NA	NA
UHGV-2132509_38	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-2132509_38	Structural annotation	PF04545, MF_00962, TIGR02984, COG1191	NA	NA
UHGV-2132509_40	PHROG	phrog_6716	NA	unknown function
UHGV-2132509_43	PHROG	phrog_1238	phosphoheptose isomerase	moron, auxiliary metabolic gene and host takeover
UHGV-2132509_43	UniRef90	UniRef90_A0A7Z0EIA5	Rhodanese-related sulfurtransferase	NA
UHGV-2132509_43	eggNOG-mapper	33898.JRHJ01000076_gene397	NA	NA
UHGV-2132509_43	Structural annotation	TIGR01689	NA	NA
UHGV-2132509_45	Structural annotation	PF20027	NA	NA
UHGV-2132509_47	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2132509_47	UniRef90	UniRef90_A0A650EVM4	HNH homing endonuclease	NA
UHGV-2132509_47	eggNOG-mapper	213769.Q09WT2_9CAUD	HNH endonuclease	NA
UHGV-2132509_47	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-2132509_47	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-2132509_48	Structural annotation	PF09871, TIGR00739	NA	NA
UHGV-2132509_49	KOfam	K05925	METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348]	NA
UHGV-2132509_49	PHROG	phrog_359	DNA methyltransferase	other
UHGV-2132509_49	UniRef90	UniRef90_UPI0011C79F10	MT-A70 family methyltransferase	NA
UHGV-2132509_49	eggNOG-mapper	1125699.HMPREF9194_02002	Belongs to the MT-A70-like family	NA
UHGV-2132509_49	PADLOC	MTase_II_00048	Type II methyltransferase	RM
UHGV-2132509_49	Pfam	PF05063	MT-A70	MT-A70
UHGV-2132509_49	COG	COG4725	N6-adenosine-specific RNA methylase IME4	NA
UHGV-2132509_49	Structural annotation	PF05063, MF_01872, NF010253, COG4725	NA	NA
UHGV-2132509_50	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2132509_50	UniRef90	UniRef90_A0A7C9LJY9	NA	NA
UHGV-2132509_50	eggNOG-mapper	879308.HMPREF9130_0415	NA	NA
UHGV-2132509_50	Pfam	PF06356	NA	DUF1064
UHGV-2132509_50	Structural annotation	PF06356	NA	NA
UHGV-2132509_52	eggNOG-mapper	1304866.K413DRAFT_4602	NA	NA
UHGV-2132509_53	PHROG	phrog_1123	NA	unknown function
UHGV-2132509_53	eggNOG-mapper	1560313.A0A0D3MSU0_9CAUD	NA	NA
UHGV-2132509_53	Structural annotation	PF02002, TIGR03433, COG1695	NA	NA
UHGV-2132509_54	Structural annotation	PF11417	NA	NA
UHGV-2132509_55	PHROG	phrog_8489	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-2132509_55	UniRef90	UniRef90_UPI001D0B3316	replisome organizer	NA
UHGV-2132509_55	eggNOG-mapper	1139219.I569_00860	DnaD domain protein	NA
UHGV-2132509_55	COG	COG3935	DNA replication protein DnaD	NA
UHGV-2132509_55	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-2132509_56	PHROG	phrog_7566	NA	unknown function
UHGV-2132509_56	eggNOG-mapper	97139.C824_05985	NA	NA
UHGV-2132509_57	UniRef90	UniRef90_UPI001F3F3E5C	recombination protein NinB	NA
UHGV-2132509_57	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-2132509_57	Structural annotation	PF05772, NF007281	NA	NA
UHGV-2132509_58	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2132509_58	UniRef90	UniRef90_A0A7X7HFU7	AAA family ATPase	NA
UHGV-2132509_58	eggNOG-mapper	1329516.JPST01000033_gene2854	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage	NA
UHGV-2132509_58	Pfam	PF13479	AAA domain	AAA_24
UHGV-2132509_58	COG	COG0468	RecA/RadA recombinase	NA
UHGV-2132509_58	Structural annotation	PF13479, MF_00348, TIGR01618, COG0468	NA	NA
UHGV-2132509_59	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-2132509_59	UniRef90	UniRef90_A0A1C5VJZ4	Siphovirus Gp157	NA
UHGV-2132509_59	eggNOG-mapper	686340.Metal_4000	PFAM Siphovirus Gp157	NA
UHGV-2132509_59	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-2132509_59	Structural annotation	PF05565, NF002139	NA	NA
UHGV-2132509_64	UniRef90	UniRef90_A0A3D1PJT4	HTH cro/C1-type domain-containing protein	NA
UHGV-2132509_64	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2132509_64	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2132509_65	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2132509_65	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2132509_65	UniRef90	UniRef90_A0A3D1PLJ6	HTH cro/C1-type domain-containing protein	NA
UHGV-2132509_65	eggNOG-mapper	1280689.AUJC01000011_gene1494	Helix-turn-helix XRE-family like proteins	NA
UHGV-2132509_65	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2132509_65	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-2132509_65	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-2132509_66	Structural annotation	PF06114	NA	NA
UHGV-2132509_67	KOfam	K14059	int; integrase	NA
UHGV-2132509_67	PHROG	phrog_1	integrase	integration and excision
UHGV-2132509_67	UniRef90	UniRef90_A0A3D1PL33	Recombinase XerC	NA
UHGV-2132509_67	eggNOG-mapper	935948.KE386495_gene1213	Phage integrase family	NA
UHGV-2132509_67	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-2132509_67	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2132509_67	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2132509_67	Structural annotation	PF00589, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-2132509_69	KOfam	K00945	cmk; CMP/dCMP kinase [EC:2.7.4.25]	NA
UHGV-2132509_69	UniRef90	UniRef90_R7FJK4	Cytidylate kinase	NA
UHGV-2132509_69	eggNOG-mapper	526218.Sterm_2690	Belongs to the cytidylate kinase family. Type 1 subfamily	NA
UHGV-2132509_69	Pfam	PF02224	Cytidylate kinase	Cytidylate_kin
UHGV-2132509_69	NCBIFam	TIGR00017.1	(d)CMP kinase	NA
UHGV-2132509_69	COG	COG0283	Cytidylate kinase	NA
UHGV-2132509_69	HAMAP	MF_00238	Cytidylate kinase [cmk]	NA