UHGV-2133544

Genome information

vOTU vOTU-042049

Genome length 34,144 bps

CDS count 39

Completeness 74.60% (medium-quality)

geNomad score 0.9644

Prediction confidence Confident

Genome information
Genome ID	UHGV-2133544
vOTU ID	vOTU-042049
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029716\|Ga0245260_1000676\|provirus_18669_52812
BioSample	SAMEA3449311
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	74.60% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	3
Recoded stop codon	No

Viral signal
geNomad score	0.9644
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	56.88
Jumbo phage	No

Genome content
Genome length	34,144 bps
GC content	55.71%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	39
CDS density	97.03%
Average CDS length	854.46 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2133544_1	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-2133544_1	PHROG	phrog_2713	NA	unknown function
UHGV-2133544_1	UniRef90	UniRef90_V2Y244	Site-specific DNA-methyltransferase (adenine-specific)	NA
UHGV-2133544_1	eggNOG-mapper	1226322.HMPREF1545_00238	HsdM N-terminal domain	NA
UHGV-2133544_1	PADLOC	MTase_I_00002	Type I methyltransferase	RM
UHGV-2133544_1	Pfam	PF12161	HsdM N-terminal domain	HsdM_N
UHGV-2133544_1	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-2133544_1	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-2133544_1	Structural annotation	PF12161	NA	NA
UHGV-2133544_2	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-2133544_2	PHROG	phrog_95	integrase	integration and excision
UHGV-2133544_2	UniRef90	UniRef90_A0A174BX51	Transposon Tn3 resolvase	NA
UHGV-2133544_2	eggNOG-mapper	457415.HMPREF1006_00488	Recombinase	NA
UHGV-2133544_2	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-2133544_2	Pfam	PF07508	Recombinase	Recombinase
UHGV-2133544_2	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-2133544_2	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-2133544_2	Structural annotation	PF00239, PF07508, PF18822, NF041201, COG1961	NA	NA
UHGV-2133544_3	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-2133544_3	PHROG	phrog_95	integrase	integration and excision
UHGV-2133544_3	UniRef90	UniRef90_A0A1Q6PU52	Recombinase family protein	NA
UHGV-2133544_3	eggNOG-mapper	1203606.HMPREF1526_00579	Resolvase, N terminal domain	NA
UHGV-2133544_3	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-2133544_3	Pfam	PF07508	Recombinase	Recombinase
UHGV-2133544_3	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-2133544_3	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-2133544_3	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-2133544_4	PHROG	phrog_2996	NA	unknown function
UHGV-2133544_4	eggNOG-mapper	1203606.HMPREF1526_00580	NA	NA
UHGV-2133544_4	Pfam	PF20612	SHOCT domain	SHOCT_2
UHGV-2133544_4	Structural annotation	PF20612	NA	NA
UHGV-2133544_5	PHROG	phrog_2308	NA	unknown function
UHGV-2133544_5	UniRef90	UniRef90_G4Q420	Sigma70_r4_2 domain-containing protein	NA
UHGV-2133544_5	eggNOG-mapper	1042156.CXIVA_07140	COG1961 Site-specific recombinases, DNA invertase Pin homologs	NA
UHGV-2133544_5	Pfam	PF06056	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
UHGV-2133544_5	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-2133544_5	Structural annotation	PF06056, COG2771	NA	NA
UHGV-2133544_7	KOfam	K22519	PTAC5; protein disulfide-isomerase [EC:5.3.4.1]	NA
UHGV-2133544_7	PHROG	phrog_2649	endolysin	lysis
UHGV-2133544_7	UniRef90	UniRef90_A0A1Q6PTR5	PG_binding_1 domain-containing protein	NA
UHGV-2133544_7	eggNOG-mapper	871963.Desdi_1346	NLP P60 protein	NA
UHGV-2133544_7	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-2133544_7	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-2133544_7	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-2133544_7	Structural annotation	PF01471, PF19087, NF041850, TIGR02219, COG3409, COG3103, COG0791	NA	NA
UHGV-2133544_8	PHROG	phrog_199	holin	lysis
UHGV-2133544_8	UniRef90	UniRef90_A0A1Q6PTT3	Holin	NA
UHGV-2133544_8	eggNOG-mapper	1203606.HMPREF1526_00583	toxin secretion phage lysis holin	NA
UHGV-2133544_8	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-2133544_8	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-2133544_8	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-2133544_8	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-2133544_9	eggNOG-mapper	35754.JNYJ01000005_gene5353	Chitin-binding protein	NA
UHGV-2133544_9	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-2133544_9	COG	COG3397	Predicted carbohydrate-binding protein, contains CBM5 and CBM33 domains	NA
UHGV-2133544_10	Structural annotation	PF09792, NF033679	NA	NA
UHGV-2133544_11	PHROG	phrog_372	tail protein	tail
UHGV-2133544_11	UniRef90	UniRef90_UPI001F1AF627	NA	NA
UHGV-2133544_11	eggNOG-mapper	658655.HMPREF0988_00525	the current gene model (or a revised gene model) may contain a frame shift	NA
UHGV-2133544_11	Pfam	PF05895	NA	DUF859
UHGV-2133544_11	COG	COG4675	Phage tail collar domain	NA
UHGV-2133544_11	Structural annotation	PF05895, MF_04116, NF010681, NF012201, COG3291	NA	NA
UHGV-2133544_12	PHROG	phrog_18110	NA	unknown function
UHGV-2133544_12	eggNOG-mapper	883114.HMPREF9709_01182	Phage minor structural protein	NA
UHGV-2133544_12	COG	COG4926	Phage-related protein	NA
UHGV-2133544_13	KOfam	K11062	entD; probable enterotoxin D	NA
UHGV-2133544_13	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-2133544_13	UniRef90	UniRef90_A0A3D2JIN2	SH3b domain-containing protein (Fragment)	NA
UHGV-2133544_13	eggNOG-mapper	386415.NT01CX_2159	Phage minor structural protein	NA
UHGV-2133544_13	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-2133544_13	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-2133544_13	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-2133544_13	COG	COG4926	Phage-related protein	NA
UHGV-2133544_13	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-2133544_14	KOfam	K03789	rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]	NA
UHGV-2133544_14	PHROG	phrog_1249	acetyltransferase	other
UHGV-2133544_14	UniRef90	UniRef90_A0A416RIU9	GNAT family N-acetyltransferase	NA
UHGV-2133544_14	eggNOG-mapper	1449050.JNLE01000005_gene4615	Acetyltransferase (GNAT) domain	NA
UHGV-2133544_14	Pfam	PF00583	Acetyltransferase (GNAT) family	Acetyltransf_1
UHGV-2133544_14	COG	COG0454	N-acetyltransferase, GNAT superfamily (includes histone acetyltransferase HPA2)	NA
UHGV-2133544_15	UniRef90	UniRef90_A0A3B9DTM8	TIGR04076 family protein	NA
UHGV-2133544_15	eggNOG-mapper	411902.CLOBOL_04634	NA	NA
UHGV-2133544_15	NCBIFam	TIGR04076.1	TIGR04076 family protein	NA
UHGV-2133544_16	UniRef90	UniRef90_A0A351MWX6	GNAT family N-acetyltransferase	NA
UHGV-2133544_16	eggNOG-mapper	457412.RSAG_04508	Acetyltransferase (GNAT) domain	NA
UHGV-2133544_16	Pfam	PF13508	Acetyltransferase (GNAT) domain	Acetyltransf_7
UHGV-2133544_16	COG	COG0454	N-acetyltransferase, GNAT superfamily (includes histone acetyltransferase HPA2)	NA
UHGV-2133544_16	Structural annotation	PF12568, MF_02210, NF007025, COG0456	NA	NA
UHGV-2133544_17	KOfam	K22441	paiA; diamine N-acetyltransferase [EC:2.3.1.57]	NA
UHGV-2133544_17	UniRef90	UniRef90_A0A810Q2R3	N-acetyltransferase	NA
UHGV-2133544_17	eggNOG-mapper	518637.EUBIFOR_00601	Acetyltransferase (GNAT) domain	NA
UHGV-2133544_17	Pfam	PF13508	Acetyltransferase (GNAT) domain	Acetyltransf_7
UHGV-2133544_17	COG	COG0454	N-acetyltransferase, GNAT superfamily (includes histone acetyltransferase HPA2)	NA
UHGV-2133544_18	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-2133544_18	UniRef90	UniRef90_A0A7C6FS63	Phage tail protein	NA
UHGV-2133544_18	eggNOG-mapper	272562.CA_C0062	tail component	NA
UHGV-2133544_18	COG	COG4722	Phage-related protein YomH	NA
UHGV-2133544_18	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-2133544_19	KOfam	K10421	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	NA
UHGV-2133544_19	PHROG	phrog_13339	tail length tape measure protein	tail
UHGV-2133544_19	UniRef90	UniRef90_A0A1Q6PTR6	Phage tail tape measure protein	NA
UHGV-2133544_19	eggNOG-mapper	1476973.JMMB01000007_gene1771	Phage-related minor tail protein	NA
UHGV-2133544_19	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-2133544_19	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-2133544_19	COG	COG5283	Phage-related tail protein	NA
UHGV-2133544_19	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-2133544_23	eggNOG-mapper	1111135.HMPREF1248_0663	cell adhesion	NA
UHGV-2133544_23	COG	COG2369	NA	NA
UHGV-2133544_24	PHROG	phrog_8680	NA	unknown function
UHGV-2133544_24	UniRef90	UniRef90_A0A417QFZ0	NA	NA
UHGV-2133544_24	eggNOG-mapper	411470.RUMGNA_02208	NA	NA
UHGV-2133544_24	Pfam	PF14386	NA	DUF4417
UHGV-2133544_24	Structural annotation	PF14386	NA	NA
UHGV-2133544_25	PHROG	phrog_88	major tail protein	tail
UHGV-2133544_25	UniRef90	UniRef90_A0A7C6BMC6	Phage tail protein	NA
UHGV-2133544_25	eggNOG-mapper	1382315.JPOI01000001_gene276	Phage major tail protein phi13	NA
UHGV-2133544_25	Pfam	PF04630	Phage tail tube protein	Phage_TTP_1
UHGV-2133544_25	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-2133544_25	COG	COG5276	NA	NA
UHGV-2133544_25	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-2133544_26	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2133544_26	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-2133544_26	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-2133544_26	Structural annotation	PF04883, TIGR01725	NA	NA
UHGV-2133544_27	Structural annotation	PF05657	NA	NA
UHGV-2133544_28	PHROG	phrog_25	head closure Hc1	connector
UHGV-2133544_28	UniRef90	UniRef90_A0A7X7FI16	Phage head closure protein	NA
UHGV-2133544_28	eggNOG-mapper	1209989.TepiRe1_2601	Phage head-tail joining protein	NA
UHGV-2133544_28	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-2133544_28	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-2133544_28	COG	COG5614	Phage head-tail adaptor	NA
UHGV-2133544_28	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-2133544_29	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-2133544_29	UniRef90	UniRef90_A0A7X7FKE4	Phage gp6-like head-tail connector protein	NA
UHGV-2133544_29	eggNOG-mapper	1121116.KB894776_gene1858	Phage gp6-like head-tail connector protein	NA
UHGV-2133544_29	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-2133544_29	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-2133544_29	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-2133544_30	PHROG	phrog_12102	NA	unknown function
UHGV-2133544_30	UniRef90	UniRef90_A0A7X7FI45	Head fiber protein	NA
UHGV-2133544_30	eggNOG-mapper	665956.HMPREF1032_02264	NA	NA
UHGV-2133544_30	Pfam	PF11133	Head fiber protein	Phage_head_fibr
UHGV-2133544_31	PHROG	phrog_10	major head protein	head and packaging
UHGV-2133544_31	UniRef90	UniRef90_A0A1Q6PTS2	Capsid protein	NA
UHGV-2133544_31	eggNOG-mapper	696281.Desru_3549	TIGRFAM phage major capsid protein, HK97 family	NA
UHGV-2133544_31	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2133544_31	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2133544_31	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2133544_31	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2133544_32	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-2133544_32	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-2133544_32	UniRef90	UniRef90_A0A1Q6PTQ8	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-2133544_32	eggNOG-mapper	1216932.CM240_0674	Belongs to the peptidase S14 family	NA
UHGV-2133544_32	Pfam	PF00574	Clp protease	CLP_protease
UHGV-2133544_32	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-2133544_32	Structural annotation	PF00574, MF_00444, NF011089, COG0740	NA	NA
UHGV-2133544_33	PHROG	phrog_12	portal protein	head and packaging
UHGV-2133544_33	UniRef90	UniRef90_A0A1Q6PTQ2	Phage portal protein	NA
UHGV-2133544_33	eggNOG-mapper	1121289.JHVL01000007_gene2755	Phage portal protein, HK97 family	NA
UHGV-2133544_33	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2133544_33	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-2133544_33	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2133544_33	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-2133544_34	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-2133544_34	PHROG	phrog_2323	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2133544_34	UniRef90	UniRef90_E7GJY4	Phage endonuclease	NA
UHGV-2133544_34	eggNOG-mapper	742740.HMPREF9474_01229	HNH endonuclease	NA
UHGV-2133544_34	AcrCatalog	cluster_19695	NA	NA
UHGV-2133544_34	Pfam	PF01844	HNH endonuclease	HNH
UHGV-2133544_34	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2133544_34	Structural annotation	PF01844, COG1403	NA	NA
UHGV-2133544_35	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2133544_35	UniRef90	UniRef90_A0A1Q6PTP4	Terminase	NA
UHGV-2133544_35	eggNOG-mapper	1408324.JNJK01000006_gene1378	Phage Terminase	NA
UHGV-2133544_35	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-2133544_35	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2133544_35	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2133544_35	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-2133544_36	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-2133544_36	UniRef90	UniRef90_A0A1Q6PU38	Terminase	NA
UHGV-2133544_36	eggNOG-mapper	1209989.TepiRe1_2607	Phage terminase, small subunit	NA
UHGV-2133544_36	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-2133544_36	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-2133544_36	COG	COG3747	Phage terminase, small subunit	NA
UHGV-2133544_36	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-2133544_37	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-2133544_37	PHROG	phrog_498	DNA methyltransferase	other
UHGV-2133544_37	UniRef90	UniRef90_A0A1Q6PTS8	Methyltransferase	NA
UHGV-2133544_37	eggNOG-mapper	1121289.JHVL01000007_gene2766	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-2133544_37	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-2133544_37	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-2133544_37	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-2133544_37	COG	COG0863	DNA modification methylase	NA
UHGV-2133544_37	Structural annotation	PF01555, PF02195, MF_02015, MF_01872, NF010253, TIGR04285, COG0863, COG1475	NA	NA
UHGV-2133544_38	KOfam	K04095	fic; cell filamentation protein	NA
UHGV-2133544_38	PHROG	phrog_5978	NA	unknown function
UHGV-2133544_38	UniRef90	UniRef90_A0A1Q6PTN9	Cell filamentation protein Fic	NA
UHGV-2133544_38	eggNOG-mapper	471875.RUMLAC_00783	Fic/DOC family	NA
UHGV-2133544_38	Pfam	PF02661	Fic/DOC family	Fic
UHGV-2133544_38	COG	COG3177	Fic family protein	NA
UHGV-2133544_38	Structural annotation	PF02661, PF07106, TIGR02613, NF000244, COG3177	NA	NA