UHGV-2133841

Genome information

Genome length 32,266 bps

CDS count 44

Completeness 88.04% (medium-quality)

geNomad score 0.9800

Prediction confidence Confident

Genome information
Genome ID	UHGV-2133841
vOTU ID	vOTU-016039
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029617\|Ga0245125_100443\|provirus_3_32268
BioSample	SAMEA3449177
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	88.04% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9800
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	71.72
Jumbo phage	No

Genome content
Genome length	32,266 bps
GC content	45.87%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	44
CDS density	94.14%
Average CDS length	693.34 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2133841_1	PHROG	phrog_25468	NA	unknown function
UHGV-2133841_1	UniRef90	UniRef90_R6SRS7	Hep/Hag repeat protein	NA
UHGV-2133841_1	eggNOG-mapper	397290.C810_01268	NA	NA
UHGV-2133841_1	Pfam	PF12789	Phage tail repeat like	PTR
UHGV-2133841_1	Structural annotation	PF14879, PF09931, NF033848, NF033147, COG3500	NA	NA
UHGV-2133841_2	PHROG	phrog_1194	NA	unknown function
UHGV-2133841_2	eggNOG-mapper	1499683.CCFF01000017_gene2921	NA	NA
UHGV-2133841_2	Pfam	PF20458	NA	DUF6711
UHGV-2133841_3	PHROG	phrog_3981	tail length tape measure protein	tail
UHGV-2133841_3	eggNOG-mapper	1215915.BN193_09055	phage tail tape measure protein	NA
UHGV-2133841_3	COG	COG5185	Chromosome segregation protein NDC80, interacts with SMC proteins	NA
UHGV-2133841_5	UniRef90	UniRef90_UPI0016860472	NA	NA
UHGV-2133841_5	eggNOG-mapper	1121947.AUHK01000002_gene942	NA	NA
UHGV-2133841_5	Pfam	PF19591	NA	DUF6096
UHGV-2133841_5	Structural annotation	PF19591	NA	NA
UHGV-2133841_7	PHROG	phrog_158	major tail protein	tail
UHGV-2133841_7	UniRef90	UniRef90_A0A174ZXR0	Phage tail protein	NA
UHGV-2133841_7	eggNOG-mapper	1158607.UAU_01767	Phage tail tube protein, TTP	NA
UHGV-2133841_7	Pfam	PF08813	Phage tail tube protein, TTP	Phage_tail_3
UHGV-2133841_7	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-2133841_8	PHROG	phrog_30343	NA	unknown function
UHGV-2133841_8	eggNOG-mapper	411473.RUMCAL_00285	NA	NA
UHGV-2133841_8	Structural annotation	PF11039, MF_02210, TIGR03585, COG1670	NA	NA
UHGV-2133841_9	PHROG	phrog_78	tail terminator	connector
UHGV-2133841_9	Structural annotation	PF05657	NA	NA
UHGV-2133841_10	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2133841_10	UniRef90	UniRef90_A0A174ZQK8	Mu-like prophage protein gpG	NA
UHGV-2133841_10	eggNOG-mapper	1280692.AUJL01000025_gene2076	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-2133841_10	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-2133841_10	Structural annotation	PF05069, TIGR01725, COG5005	NA	NA
UHGV-2133841_11	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-2133841_12	PHROG	phrog_132	head-tail adaptor	connector
UHGV-2133841_12	UniRef90	UniRef90_A0A175A0L9	Phage gp6-like head-tail connector protein	NA
UHGV-2133841_12	eggNOG-mapper	764562.D7RWJ1_9CAUD	Phage gp6-like head-tail connector protein	NA
UHGV-2133841_12	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-2133841_12	Structural annotation	TIGR01560	NA	NA
UHGV-2133841_13	PHROG	phrog_422	major head protein	head and packaging
UHGV-2133841_13	UniRef90	UniRef90_R6RKD0	Gp7	NA
UHGV-2133841_13	eggNOG-mapper	1352230.S6AVV3_9CAUD	NA	NA
UHGV-2133841_13	Structural annotation	PF19821, MF_04119, TIGR04387, COG1659	NA	NA
UHGV-2133841_14	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-2133841_14	UniRef90	UniRef90_A0A371P084	NA	NA
UHGV-2133841_14	eggNOG-mapper	1235800.C819_00486	NA	NA
UHGV-2133841_14	Pfam	PF14265	NA	DUF4355
UHGV-2133841_14	Structural annotation	PF14265	NA	NA
UHGV-2133841_15	Structural annotation	PF02699, MF_00369, TIGR00739, COG1862	NA	NA
UHGV-2133841_16	PHROG	phrog_2841	minor head protein	head and packaging
UHGV-2133841_16	UniRef90	UniRef90_B0MPW0	Phage protein F-like protein	NA
UHGV-2133841_16	eggNOG-mapper	1235800.C819_00488	Phage Mu protein F like protein	NA
UHGV-2133841_16	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-2133841_16	Pfam	PF21814	NA	DUF6883
UHGV-2133841_16	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-2133841_16	COG	COG2369	NA	NA
UHGV-2133841_16	Structural annotation	PF06152	NA	NA
UHGV-2133841_17	PHROG	phrog_64	portal protein	head and packaging
UHGV-2133841_17	UniRef90	UniRef90_A0A174ZZR5	Phage portal protein, SPP1 family	NA
UHGV-2133841_17	eggNOG-mapper	1504823.CCMM01000008_gene1047	Phage portal protein, SPP1 family	NA
UHGV-2133841_17	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2133841_17	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-2133841_17	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-2133841_18	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2133841_18	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-2133841_18	UniRef90	UniRef90_A0A174ZXT9	Phage terminase, large subunit, PBSX family	NA
UHGV-2133841_18	eggNOG-mapper	246194.CHY_1680	Terminase RNAseH like domain	NA
UHGV-2133841_18	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-2133841_18	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-2133841_18	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2133841_18	COG	COG1783	Phage terminase large subunit	NA
UHGV-2133841_18	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-2133841_19	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-2133841_19	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-2133841_19	UniRef90	UniRef90_A0A174ZU67	Terminase small subunit	NA
UHGV-2133841_19	eggNOG-mapper	1160721.RBI_II00483	DNA packaging	NA
UHGV-2133841_19	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-2133841_19	COG	COG3728	Phage terminase, small subunit	NA
UHGV-2133841_19	Structural annotation	PF03592, COG3728	NA	NA
UHGV-2133841_20	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2133841_20	UniRef90	UniRef90_A0A7C6P5S1	RNA polymerase subunit sigma-24	NA
UHGV-2133841_20	eggNOG-mapper	1304880.JAGB01000002_gene2225	NA	NA
UHGV-2133841_20	Structural annotation	PF04545	NA	NA
UHGV-2133841_21	UniRef90	UniRef90_B0MKX7	NA	NA
UHGV-2133841_21	Pfam	PF04448	NA	DUF551
UHGV-2133841_24	KOfam	K06919	K06919; putative DNA primase/helicase	NA
UHGV-2133841_24	PHROG	phrog_1829	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-2133841_24	UniRef90	UniRef90_A0A6N4ALN1	SF3 helicase domain-containing protein	NA
UHGV-2133841_24	eggNOG-mapper	1410670.JHXF01000015_gene2274	Phage plasmid primase, P4 family	NA
UHGV-2133841_24	Pfam	PF08706	D5 N terminal like	D5_N
UHGV-2133841_24	Pfam	PF19263	NA	DUF5906
UHGV-2133841_24	Pfam	PF03288	Poxvirus D5 protein-like	Pox_D5
UHGV-2133841_24	NCBIFam	TIGR01613.1	phage/plasmid primase, P4 family	NA
UHGV-2133841_24	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-2133841_24	Structural annotation	PF08706, PF05272, PF02257, MF_04000, NF011296, COG3378, COG4983	NA	NA
UHGV-2133841_25	PHROG	phrog_378	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2133841_25	UniRef90	UniRef90_UPI0019172865	NA	NA
UHGV-2133841_25	eggNOG-mapper	1002809.SSIL_1401	NA	NA
UHGV-2133841_25	Pfam	PF05037	NA	DUF669
UHGV-2133841_25	Structural annotation	PF05037, NF004948	NA	NA
UHGV-2133841_26	PHROG	phrog_5702	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2133841_26	UniRef90	UniRef90_A0A6N4AKU7	VRR-NUC domain-containing protein	NA
UHGV-2133841_26	eggNOG-mapper	1410670.JHXF01000015_gene2271	VRR_NUC	NA
UHGV-2133841_26	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-2133841_26	Structural annotation	PF01870, MF_00130, NF002581, COG1591	NA	NA
UHGV-2133841_27	KOfam	K19789	radD; DNA repair protein RadD	NA
UHGV-2133841_27	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2133841_27	UniRef90	UniRef90_R6RJE0	DNA or RNA helicases of superfamily II	NA
UHGV-2133841_27	eggNOG-mapper	1410670.JHXF01000015_gene2270	helicase	NA
UHGV-2133841_27	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-2133841_27	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-2133841_27	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-2133841_27	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-2133841_27	Structural annotation	PF04851, PF00271, MF_01489, TIGR04095, COG1061	NA	NA
UHGV-2133841_28	PHROG	phrog_1366	NA	unknown function
UHGV-2133841_28	UniRef90	UniRef90_R6S946	AAA domain-containing protein	NA
UHGV-2133841_28	eggNOG-mapper	1410670.JHXF01000015_gene2269	AAA domain	NA
UHGV-2133841_28	Pfam	PF13479	AAA domain	AAA_24
UHGV-2133841_28	COG	COG0468	RecA/RadA recombinase	NA
UHGV-2133841_28	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-2133841_29	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-2133841_29	UniRef90	UniRef90_R6R2R3	Siphovirus Gp157	NA
UHGV-2133841_29	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-2133841_29	Structural annotation	PF05565	NA	NA
UHGV-2133841_30	PHROG	phrog_15609	NA	unknown function
UHGV-2133841_30	UniRef90	UniRef90_A0A373VML2	NA	NA
UHGV-2133841_30	eggNOG-mapper	641112.ACOK01000073_gene2872	NA	NA
UHGV-2133841_30	Structural annotation	PF11300, NF033725	NA	NA
UHGV-2133841_31	PHROG	phrog_8470	NA	unknown function
UHGV-2133841_31	UniRef90	UniRef90_UPI0019175B9C	PcfJ domain-containing protein	NA
UHGV-2133841_31	eggNOG-mapper	641112.ACOK01000073_gene2870	PcfJ-like protein	NA
UHGV-2133841_31	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-2133841_31	Structural annotation	PF14284	NA	NA
UHGV-2133841_32	PHROG	phrog_38338	NA	unknown function
UHGV-2133841_32	UniRef90	UniRef90_UPI00137B3A8C	Cas9 inhibitor AcrIIA9 family protein	NA
UHGV-2133841_32	eggNOG-mapper	693746.OBV_24020	NA	NA
UHGV-2133841_33	Structural annotation	MF_01549, TIGR02228	NA	NA
UHGV-2133841_39	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2133841_39	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2133841_39	UniRef90	UniRef90_A0A6N4AL49	HTH cro/C1-type domain-containing protein	NA
UHGV-2133841_39	eggNOG-mapper	1230342.CTM_14383	Helix-turn-helix domain	NA
UHGV-2133841_39	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-2133841_39	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2133841_39	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-2133841_39	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-2133841_40	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-2133841_40	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-2133841_40	UniRef90	UniRef90_A0A6N4ALL5	HTH cro/C1-type domain-containing protein	NA
UHGV-2133841_40	eggNOG-mapper	641112.ACOK01000073_gene2861	Peptidase S24-like	NA
UHGV-2133841_40	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-2133841_40	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2133841_40	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-2133841_40	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-2133841_40	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, NF041951, COG1396, COG1974	NA	NA
UHGV-2133841_43	UniRef90	UniRef90_A0A6N4ALK1	RHH_1 domain-containing protein	NA
UHGV-2133841_43	Pfam	PF01402	Ribbon-helix-helix protein, copG family	RHH_1
UHGV-2133841_43	Structural annotation	PF01402, NF040976, COG4710	NA	NA
UHGV-2133841_44	KOfam	K14059	int; integrase	NA
UHGV-2133841_44	PHROG	phrog_1	integrase	integration and excision
UHGV-2133841_44	UniRef90	UniRef90_UPI00164D34B0	site-specific integrase	NA
UHGV-2133841_44	eggNOG-mapper	290402.Cbei_2306	Belongs to the 'phage' integrase family	NA
UHGV-2133841_44	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-2133841_44	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2133841_44	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2133841_44	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA