UHGV-2134365

Genome information

Genome length 36,373 bps

CDS count 44

Completeness 99.90% (high-quality)

geNomad score 0.9445

Prediction confidence Confident

Genome information
Genome ID	UHGV-2134365
vOTU ID	vOTU-014367
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029696\|Ga0245263_100009\|provirus_346464_388847
BioSample	SAMEA3449314
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	6
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9445
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	22.54
Jumbo phage	No

Genome content
Genome length	36,373 bps
GC content	53.09%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	44
CDS density	92.51%
Average CDS length	766.84 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2134365_1	KOfam	K14059	int; integrase	NA
UHGV-2134365_1	PHROG	phrog_1	integrase	integration and excision
UHGV-2134365_1	UniRef90	UniRef90_A0A2N8HIT9	Tyr recombinase domain-containing protein	NA
UHGV-2134365_1	eggNOG-mapper	794903.OPIT5_01350	Belongs to the 'phage' integrase family	NA
UHGV-2134365_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2134365_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2134365_1	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-2134365_2	UniRef90	UniRef90_R6JC01	TPR repeat-containing protein	NA
UHGV-2134365_2	Pfam	PF08238	Sel1 repeat	Sel1
UHGV-2134365_2	COG	COG0741	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	NA
UHGV-2134365_3	KOfam	K07126	NA	NA
UHGV-2134365_3	PHROG	phrog_8741	NA	unknown function
UHGV-2134365_3	UniRef90	UniRef90_UPI000C9D050E	sel1 repeat family protein	NA
UHGV-2134365_3	eggNOG-mapper	272624.lpg2639	Sel1-like repeats.	NA
UHGV-2134365_3	Pfam	PF08238	Sel1 repeat	Sel1
UHGV-2134365_3	COG	COG0790	TPR repeat	NA
UHGV-2134365_4	UniRef90	UniRef90_A0A7V1C233	Three-Cys-motif partner protein TcmP	NA
UHGV-2134365_4	eggNOG-mapper	153721.MYP_342	NA	NA
UHGV-2134365_4	NCBIFam	TIGR04474.1	three-Cys-motif partner protein TcmP	NA
UHGV-2134365_5	PHROG	phrog_2045	NA	unknown function
UHGV-2134365_5	UniRef90	UniRef90_UPI00138E6AF0	phage Gp37/Gp68 family protein	NA
UHGV-2134365_5	eggNOG-mapper	502025.Hoch_6140	Pfam:Gp37_Gp68	NA
UHGV-2134365_5	Pfam	PF07505	NA	DUF5131
UHGV-2134365_5	COG	COG4422	NA	NA
UHGV-2134365_5	Structural annotation	PF07505, MF_00660, TIGR04470, COG4422	NA	NA
UHGV-2134365_6	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-2134365_6	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-2134365_6	UniRef90	UniRef90_A0A4Q5ITN5	Peptidase_S24 domain-containing protein	NA
UHGV-2134365_6	eggNOG-mapper	349741.Amuc_1794	Peptidase S24-like	NA
UHGV-2134365_6	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-2134365_6	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-2134365_6	Structural annotation	PF00717, PF01381, MF_00015, NF007621, NF041951, COG2932	NA	NA
UHGV-2134365_11	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2134365_11	UniRef90	UniRef90_A0A410S908	ATP-binding protein	NA
UHGV-2134365_11	eggNOG-mapper	497964.CfE428DRAFT_1294	AAA domain	NA
UHGV-2134365_11	Pfam	PF13479	AAA domain	AAA_24
UHGV-2134365_11	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-2134365_12	UniRef90	UniRef90_A0A410S925	NA	NA
UHGV-2134365_12	eggNOG-mapper	1403819.BATR01000122_gene4275	NA	NA
UHGV-2134365_12	Pfam	PF10926	NA	DUF2800
UHGV-2134365_14	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-2134365_14	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2134365_14	UniRef90	UniRef90_A0A4Q5ITS8	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-2134365_14	eggNOG-mapper	608534.GCWU000341_02308	endodeoxyribonuclease RusA	NA
UHGV-2134365_14	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-2134365_14	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-2134365_14	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-2134365_16	PHROG	phrog_1008	DNA methyltransferase	other
UHGV-2134365_16	UniRef90	UniRef90_A0A6J5S323	S-adenosyl-L-methionine-dependent methyltransferase	NA
UHGV-2134365_16	eggNOG-mapper	693746.OBV_01910	NA	NA
UHGV-2134365_18	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-2134365_18	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-2134365_18	UniRef90	UniRef90_A0A410S8Z8	DNA helicase	NA
UHGV-2134365_18	eggNOG-mapper	349741.Amuc_1377	DnaB-like helicase C terminal domain	NA
UHGV-2134365_18	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-2134365_18	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-2134365_18	COG	COG0305	Replicative DNA helicase	NA
UHGV-2134365_18	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-2134365_20	KOfam	K11044	spyA; C3 family ADP-ribosyltransferase [EC:2.4.2.-]	NA
UHGV-2134365_20	PHROG	phrog_16625	NA	unknown function
UHGV-2134365_20	UniRef90	UniRef90_A0A4Q5IVQ1	ADPrib_exo_Tox domain-containing protein	NA
UHGV-2134365_20	eggNOG-mapper	563192.HMPREF0179_00384	Phage Mu protein F like protein	NA
UHGV-2134365_20	Pfam	PF03496	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
UHGV-2134365_20	COG	COG2369	NA	NA
UHGV-2134365_22	PHROG	phrog_1482	terminase small subunit	head and packaging
UHGV-2134365_22	UniRef90	UniRef90_UPI0009AEAD69	ubiquitin carboxyl-hydrolase	NA
UHGV-2134365_22	eggNOG-mapper	521000.PROVRETT_06006	NA	NA
UHGV-2134365_22	Pfam	PF20901	Bacteriophage Sf6, terminase small subunit-like	Sf6_terminase
UHGV-2134365_23	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-2134365_23	UniRef90	UniRef90_A0A1C7PDG0	p-loop containing nucleoside triphosphate hydrolase	NA
UHGV-2134365_23	eggNOG-mapper	411459.RUMOBE_01049	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD	NA
UHGV-2134365_23	COG	COG0507	ATPase/5'-3' helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-2134365_23	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG4373	NA	NA
UHGV-2134365_24	Structural annotation	PF05587, PF03388, COG3506	NA	NA
UHGV-2134365_29	PHROG	phrog_315	endolysin	lysis
UHGV-2134365_29	UniRef90	UniRef90_A0A410SED1	PG_binding_3 domain-containing protein	NA
UHGV-2134365_29	eggNOG-mapper	349741.Amuc_1360	Glycosyl hydrolase 108	NA
UHGV-2134365_29	Pfam	PF09374	Predicted Peptidoglycan domain	PG_binding_3
UHGV-2134365_29	COG	COG3926	Lysozyme family protein	NA
UHGV-2134365_29	Structural annotation	PF09374, NF040573, COG3926	NA	NA
UHGV-2134365_30	PHROG	phrog_113	portal protein	head and packaging
UHGV-2134365_30	UniRef90	UniRef90_A0A4Q5IVR1	NA	NA
UHGV-2134365_30	eggNOG-mapper	794903.OPIT5_08305	NA	NA
UHGV-2134365_30	Pfam	PF06074	NA	DUF935
UHGV-2134365_30	COG	COG4383	NA	NA
UHGV-2134365_33	KOfam	K06079	cutF, nlpE; copper homeostasis protein (lipoprotein)	NA
UHGV-2134365_33	UniRef90	UniRef90_A0A641W1J7	Copper resistance protein NlpE	NA
UHGV-2134365_33	eggNOG-mapper	349741.Amuc_1432	regulation of cell-substrate adhesion	NA
UHGV-2134365_33	Pfam	PF04170	NlpE N-terminal domain	NlpE
UHGV-2134365_33	COG	COG3015	NA	NA
UHGV-2134365_34	PHROG	phrog_328	head maturation protease	head and packaging
UHGV-2134365_34	UniRef90	UniRef90_UPI001C023827	phage protease	NA
UHGV-2134365_34	eggNOG-mapper	794903.OPIT5_08310	P22 coat protein - gene protein 5	NA
UHGV-2134365_34	Pfam	PF10123	Mu-like prophage I protein	Mu-like_Pro
UHGV-2134365_35	eggNOG-mapper	521674.Plim_2126	NA	NA
UHGV-2134365_35	Pfam	PF20911	Major capsid protein GP7	GP7
UHGV-2134365_35	Structural annotation	PF20911, MF_04133, NF041162, COG4397	NA	NA
UHGV-2134365_36	Structural annotation	PF21190, TIGR03511, COG4935	NA	NA
UHGV-2134365_42	Structural annotation	PF14594, TIGR01646, COG4379	NA	NA
UHGV-2134365_44	Structural annotation	PF18654, TIGR00606, COG0268	NA	NA